Clone Name | rbasd14c01 |
---|---|
Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = -2 Query: 270 GGKTGLFLWAVT 235 GGKTGLFLWAVT Sbjct: 107 GGKTGLFLWAVT 118
>ENDD1_MOUSE (Q8C522) Endonuclease domain-containing 1 protein precursor (EC| 3.1.30.-) Length = 501 Score = 30.0 bits (66), Expect = 1.6 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = +2 Query: 74 VVIFVSITYVLTVIIRTIIHIVWCIA 151 + +F I Y++T ++R I+H++W +A Sbjct: 341 IKLFQLIYYLVTAVLRNIVHLLWLVA 366
>YR640_MIMIV (Q5UR92) Hypothetical protein R640| Length = 530 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = -1 Query: 130 YNSADYNRQDICNG--YKYHYPQISKYP*LITNVLSNMLQA 14 Y S ++ R+ I +G Y Y+YP +S+ P + + + +QA Sbjct: 4 YQSINFRREAILSGRPYPYYYPYVSQIPCISNSCEDHRIQA 44
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +3 Query: 117 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPS 263 S++L F LG + + R P+ YCR P + ES+ E AP+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPN 247
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +3 Query: 117 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPS 263 S++L F LG + + R P+ YCR P + ES+ E AP+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESVCDEFAPN 247
>GCF_HUMAN (P16383) GC-rich sequence DNA-binding factor (GCF) (Transcription| factor 9) (TCF-9) Length = 784 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 212 PPSRIPARVTAQRNSPVFPPNIK 280 PP R+PAR AQ P+ P +K Sbjct: 118 PPKRLPARTKAQNPEPLMCPQMK 140
>CARB_PYRAE (Q8ZY48) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1024 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = -1 Query: 184 LGFLKPMCSKPSYAPNDVYNSADYNRQDICNGYKYHYPQISKYP*LITNVLSNMLQA 14 LGF P+ +PSY Y + YN++++ N +YP +I+ + ++A Sbjct: 689 LGF--PVLLRPSYVLGGTYMAVAYNKEELINFLSKAAKVSGEYPVVISKFMPRGIEA 743
>NIP21_ARATH (Q8W037) Aquaporin NIP2.1 (NOD26-like intrinsic protein 2.1)| (Nodulin-26-like major intrinsic protein 4) (AtNLM4) (NLM4 protein) (NodLikeMip4) Length = 288 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +2 Query: 74 VVIFVSITYVLTVIIRTIIHIVWCIAWFAAHRLQEAKALVL*TRRAPPSRIPARVTAQ 247 VV V I V ++I + V+C+ +AH + ++R P +++PA +T Q Sbjct: 77 VVTLVGIAVVWGIVIMVL---VYCLGHLSAHFNPAVTLALASSQRFPLNQVPAYITVQ 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,196,578 Number of Sequences: 219361 Number of extensions: 648824 Number of successful extensions: 1869 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1815 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1865 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)