ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 462 e-127
2ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 119 5e-24
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 5e-24
4dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 5e-24
5emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 92 1e-15
6ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
7dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
8dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
9dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
10gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 46 0.059
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
12dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
13dbj|AP005654.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
14gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 3.7
15gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 3.7
16gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 3.7
17emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 3.7
18emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 3.7
19emb|BX571688.3| Zebrafish DNA sequence from clone DKEY-200H23, c... 40 3.7
20dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor... 40 3.7
21gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 3.7
22gb|AC005901.1|AC005901 Homo sapiens chromosome 17, clone hRPK.15... 40 3.7
23dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full ... 40 3.7
24emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chro... 40 3.7 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  462 bits (233), Expect = e-127
 Identities = 233/233 (100%)
 Strand = Plus / Minus

                                                                       
Query: 40  tagtaattaattaaggatatttactgatttgcgggtagtgatatttgtatccattacata 99
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tagtaattaattaaggatatttactgatttgcgggtagtgatatttgtatccattacata 516

                                                                       
Query: 100 tgtcctgacggttataatccgcactattatacacatcgtttggtgcatagcttggtttgc 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgtcctgacggttataatccgcactattatacacatcgtttggtgcatagcttggtttgc 456

                                                                       
Query: 160 tgcacataggcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccag 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgcacataggcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccag 396

                                                                
Query: 220 cagaattccagcaagagtcactgcccagagaaacagccccgtctttcctccaa 272
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagaattccagcaagagtcactgcccagagaaacagccccgtctttcctccaa 343
to top
>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  119 bits (60), Expect = 5e-24
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                       
Query: 176 gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaaga 235
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                               
Query: 236 gtcactgcccagagaaacagccccgtctttcctcca 271
           || ||||||||||| |||| ||| ||||||||||||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctcca 306
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 5e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                           
Query: 169     gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 228
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 229     agcaagagtcactgcccagagaaacagccccgtctttcct 268
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 195     tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 251
               |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572
to top
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 5e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                         
Query: 169   gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 228
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 229   agcaagagtcactgcccagagaaacagccccgtctttcct 268
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 195   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 251
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552
to top
>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 227 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaa 272
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaa 332
to top
>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 195 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 251
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 404
to top
>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 195   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 251
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319
to top
>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 195 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 251
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 404
to top
>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 195 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 251
           |||||||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaa 405
to top
>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 194 ctgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccaga 248
           ||||| |||||||||||||| ||   ||||| |||||||||||| | ||||||||
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccaga 420
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 33       agaacattagtaattaattaa 53
                |||||||||||||||||||||
Sbjct: 14999901 agaacattagtaattaattaa 14999881
to top
>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0533E11
          Length = 150678

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 33   agaacattagtaattaattaa 53
            |||||||||||||||||||||
Sbjct: 5682 agaacattagtaattaattaa 5662
to top
>dbj|AP005654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0080M22
          Length = 140743

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     agaacattagtaattaattaa 53
              |||||||||||||||||||||
Sbjct: 113759 agaacattagtaattaattaa 113739
to top
>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  agtactgtagacaagaagag 209
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550
to top
>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   ccagcagaattccagcaaga 235
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
to top
>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  ccagcagaattccagcaaga 235
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
to top
>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    ttggtttgctgcacataggc 170
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
to top
>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  ttggtttgctgcacataggc 170
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
to top
>emb|BX571688.3| Zebrafish DNA sequence from clone DKEY-200H23, complete sequence
          Length = 181466

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    aacattagtaattaattaag 54
             ||||||||||||||||||||
Sbjct: 53151 aacattagtaattaattaag 53170
to top
>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 catcgtttggtgcatagctt 152
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
to top
>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    agtactgtagacaagaagag 209
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412
to top
>gb|AC005901.1|AC005901 Homo sapiens chromosome 17, clone hRPK.15_K_2, complete sequence
          Length = 156763

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    attagtaattaattaaggatattt 61
             ||||||||||||| ||||||||||
Sbjct: 21714 attagtaattaataaaggatattt 21737
to top
>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 catcgtttggtgcatagctt 152
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
to top
>emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chromosome X, complete
             sequence
          Length = 204050

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    ttaaggatatttactgattt 69
             ||||||||||||||||||||
Sbjct: 34299 ttaaggatatttactgattt 34280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,510,804
Number of Sequences: 3902068
Number of extensions: 2510804
Number of successful extensions: 48537
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48458
Number of HSP's gapped (non-prelim): 79
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top