ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479469.1| Oryza sativa (japonica cultivar-group), mRNA 196 6e-47
2dbj|AK067432.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
4dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
5gb|BT019198.1| Zea mays clone Contig871.F mRNA sequence 94 6e-16
6gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete se... 56 1e-04
7gb|AY112404.1| Zea mays CL69005_1 mRNA sequence 56 1e-04
8gb|AY106770.1| Zea mays PCO089904 mRNA sequence 56 1e-04
9dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
10gb|AY109177.1| Zea mays PCO089905 mRNA sequence 54 5e-04
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.032
12gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.032
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
14dbj|AK063910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.032
15ref|NM_116481.2| Arabidopsis thaliana ATP binding / ATPase/ nucl... 46 0.13
16gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete s... 46 0.13
17gb|AY090948.1| Arabidopsis thaliana unknown protein (At4g02480) ... 46 0.13
18emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c... 46 0.13
19gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8 46 0.13
20gb|AC146592.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
21emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 42 2.0
22dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 42 2.0
23gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 42 2.0
24gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 42 2.0
25gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 42 2.0
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
27dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 42 2.0
28dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 42 2.0
29emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 42 2.0
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
31gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 42 2.0
32emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 42 2.0
33gb|K00981.1|NEUQA2MUD N.crassa qa-2 gene mutant 158-106, 5' flank 42 2.0
34dbj|AB029459.1| Salix gilgiana SgPG3 mRNA for polygalacturonase,... 42 2.0
35gb|BT016450.1| Zea mays clone Contig283 mRNA sequence 40 7.7
36gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
37gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence 40 7.7
38gb|AC134303.2| Homo sapiens chromosome 19 clone LLNLR-265H6, com... 40 7.7
39gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, com... 40 7.7
40emb|X14603.1|NCQA Neurospora crassa qa gene cluster 40 7.7
41emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chr... 40 7.7
42gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, comple... 40 7.7
43gb|AC108101.2| Homo sapiens chromosome 5 clone RP11-125H10, comp... 40 7.7
44gb|AC092280.2| Homo sapiens chromosome 5 clone CTD-2028M21, comp... 40 7.7
45gb|AC011466.6| Homo sapiens chromosome 19 clone CTC-453G23, comp... 40 7.7
46dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
47gb|DQ002945.1| Dyacopterus spadiceus isolate DS10 12S ribosomal ... 40 7.7
48gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone ... 40 7.7
49dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 7.7
50emb|BX648568.1|HSM808716 Homo sapiens mRNA; cDNA DKFZp779L0366 (... 40 7.7
51gb|AC006229.17|AC006229 Homo sapiens chromosome 4 clone C0011D19... 40 7.7
52gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence 40 7.7
53gb|AY104413.1| Zea mays PCO098503 mRNA sequence 40 7.7
54gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 40 7.7
55gb|AC127589.4| Mus musculus BAC clone RP23-134K6 from 5, complet... 40 7.7
56gb|K00977.1|NEUQA2WT N.crassa wild type qa-2 gene, 5' flank 40 7.7
57gb|K00982.1|NEUQA2MUE N.crassa qa-2 gene mutant 158-33, 5' flank 40 7.7
58gb|K00980.1|NEUQA2MUC N.crassa qa-2 gene mutants 162-4 and 162-5... 40 7.7
59gb|K00979.1|NEUQA2MUB N.crassa qa-2 gene mutant 158-6, 5' flank 40 7.7
60gb|K00978.1|NEUQA2MUA N.crassa qa-2 gene mutant 158-99, 5' flank 40 7.7 
>ref|XM_479469.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3673

 Score =  196 bits (99), Expect = 6e-47
 Identities = 232/277 (83%)
 Strand = Plus / Minus

                                                                        
Query: 292  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
            ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 3408 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 3349

                                                                        
Query: 352  ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctgctc 411
            |||||||| ||||||  ||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 3348 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacctgctc 3289

                                                                        
Query: 412  gtgtgcctgtttgagatcactcatatttagaggacggacatcactgctagaatacttagg 471
             ||||| ||||||| |||  ||||  |||| | ||| |||||||||||||||      ||
Sbjct: 3288 atgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctagaacgaggggg 3229

                                                                        
Query: 472  aggcaatggtttgttttctgcttctgctaagagtctctccttcttctctttgtcaaggat 531
            ||| |||||||| ||||||||||||||| |   |||||||||||||||| | ||||||||
Sbjct: 3228 aggtaatggtttattttctgcttctgctgatgctctctccttcttctctctttcaaggat 3169

                                                 
Query: 532  ttcccttatgggacgatgtgcagcggtaatacacaga 568
             ||||||||||| | ||||||||| || | |||||||
Sbjct: 3168 ctcccttatggggcaatgtgcagcagttacacacaga 3132
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>dbj|AK067432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100B13, full
            insert sequence
          Length = 3673

 Score =  196 bits (99), Expect = 6e-47
 Identities = 232/277 (83%)
 Strand = Plus / Minus

                                                                        
Query: 292  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
            ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 3408 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 3349

                                                                        
Query: 352  ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctgctc 411
            |||||||| ||||||  ||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 3348 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacctgctc 3289

                                                                        
Query: 412  gtgtgcctgtttgagatcactcatatttagaggacggacatcactgctagaatacttagg 471
             ||||| ||||||| |||  ||||  |||| | ||| |||||||||||||||      ||
Sbjct: 3288 atgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctagaacgaggggg 3229

                                                                        
Query: 472  aggcaatggtttgttttctgcttctgctaagagtctctccttcttctctttgtcaaggat 531
            ||| |||||||| ||||||||||||||| |   |||||||||||||||| | ||||||||
Sbjct: 3228 aggtaatggtttattttctgcttctgctgatgctctctccttcttctctctttcaaggat 3169

                                                 
Query: 532  ttcccttatgggacgatgtgcagcggtaatacacaga 568
             ||||||||||| | ||||||||| || | |||||||
Sbjct: 3168 ctcccttatggggcaatgtgcagcagttacacacaga 3132
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  115 bits (58), Expect = 2e-22
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                            
Query: 292      ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
                ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 28381445 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 28381386

                                                                        
Query: 352      ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacct 407
                |||||||| ||||||  ||||||||  ||||||||||| |||||||||||||||||
Sbjct: 28381385 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacct 28381330



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                           
Query: 510      ccttcttctctttgtcaaggatttcccttatgggacgatgtgcagcggtaatacacaga 568
                ||||||||||| | |||||||| ||||||||||| | ||||||||| || | |||||||
Sbjct: 28380645 ccttcttctctctttcaaggatctcccttatggggcaatgtgcagcagttacacacaga 28380587



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                            
Query: 403      tacctgctcgtgtgcctgtttgagatcactcatatttagaggacggacatcactgctaga 462
                ||||||||| ||||| ||||||| |||  ||||  |||| | ||| ||||||||||||||
Sbjct: 28381033 tacctgctcatgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctaga 28380974

                                                     
Query: 463      atacttaggaggcaatggtttgttttctgcttctgct 499
                |      ||||| |||||||| |||||||||||||||
Sbjct: 28380973 acgagggggaggtaatggtttattttctgcttctgct 28380937
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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score =  115 bits (58), Expect = 2e-22
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                          
Query: 292    ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
              ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 107008 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 106949

                                                                      
Query: 352    ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacct 407
              |||||||| ||||||  ||||||||  ||||||||||| |||||||||||||||||
Sbjct: 106948 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacct 106893



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                         
Query: 510    ccttcttctctttgtcaaggatttcccttatgggacgatgtgcagcggtaatacacaga 568
              ||||||||||| | |||||||| ||||||||||| | ||||||||| || | |||||||
Sbjct: 106208 ccttcttctctctttcaaggatctcccttatggggcaatgtgcagcagttacacacaga 106150



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                          
Query: 403    tacctgctcgtgtgcctgtttgagatcactcatatttagaggacggacatcactgctaga 462
              ||||||||| ||||| ||||||| |||  ||||  |||| | ||| ||||||||||||||
Sbjct: 106596 tacctgctcatgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctaga 106537

                                                   
Query: 463    atacttaggaggcaatggtttgttttctgcttctgct 499
              |      ||||| |||||||| |||||||||||||||
Sbjct: 106536 acgagggggaggtaatggtttattttctgcttctgct 106500
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>gb|BT019198.1| Zea mays clone Contig871.F mRNA sequence
          Length = 1247

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 485 ttttctgcttctgctaagagtctctccttcttctctttgtcaaggatttcccttatggga 544
           ||||||||||| ||||||  |||||||||||||||| | ||||| |||||||||||||||
Sbjct: 864 ttttctgcttcagctaaggttctctccttcttctctctttcaagaatttcccttatggga 805

                                  
Query: 545 cgatgtgcagcggtaatacacag 567
           |||||||| || || ||||||||
Sbjct: 804 cgatgtgctgcagttatacacag 782



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 114/141 (80%)
 Strand = Plus / Minus

                                                                        
Query: 292  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
            |||||| |||||||| |  |||||||| |  || || |||||||| ||||| || |||||
Sbjct: 1057 ctacataaagtagctcaacggtgtcttgtgcctcgacccgccttctccgtagaggtcgtt 998

                                                                        
Query: 352  ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctgctc 411
            ||| || || |||||  ||||||||   ||||| ||||||||||| ||||| ||||||||
Sbjct: 997  ccattggacgagctcattcatattttttgaatccgatgatatactcgcacaaacctgctc 938

                                 
Query: 412  gtgtgcctgtttgagatcact 432
             ||||| || |||| ||||||
Sbjct: 937  atgtgcgtgcttgaaatcact 917
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>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence
          Length = 130355

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 95/118 (80%)
 Strand = Plus / Minus

                                                                         
Query: 292   ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
             ||||||||||||||||| || | || | ||||| ||||||||||| || || || || ||
Sbjct: 21918 ctacatgaagtagcttaaagatttcatttttctcgatccgccttctccatagagatcatt 21859

                                                                       
Query: 352   ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctgc 409
             ||| ||    |||||| ||||||||| ||| || ||||| | ||||||||| ||||||
Sbjct: 21858 ccattgttgtagctcgttcatatttgtcgactctgatgacacacttgcacacacctgc 21801
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>gb|AY112404.1| Zea mays CL69005_1 mRNA sequence
          Length = 631

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 112/141 (79%)
 Strand = Plus / Plus

                                                                       
Query: 292 ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
           |||||| |||||||| |  |||||||| |  || || |||||||| ||||| || |||||
Sbjct: 261 ctacataaagtagctcaacggtgtcttgtgcctcgacccgccttctccgtagaggtcgtt 320

                                                                       
Query: 352 ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctgctc 411
           ||| || || |||||  |||||    | ||||| ||||||||||| ||||| ||||||||
Sbjct: 321 ccattggacgagctcattcatannnnnngaatccgatgatatactcgcacaaacctgctc 380

                                
Query: 412 gtgtgcctgtttgagatcact 432
            ||||| || |||| ||||||
Sbjct: 381 atgtgcgtgcttgaaatcact 401



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 530 atttcccttatgggacgatgtgcagcggtaatacacag 567
           ||||||||||||||||||||||| || || ||||||||
Sbjct: 499 atttcccttatgggacgatgtgctgcagttatacacag 536
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>gb|AY106770.1| Zea mays PCO089904 mRNA sequence
          Length = 616

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 294 acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 353
           ||||||||||||| || | | ||||||| || || |||||||||||||| || |||||||
Sbjct: 188 acatgaagtagctcagcgctttcttcttccttgacccgccttcaccgtacaggtcgttcc 129

                              
Query: 354 actgaacaagctcgntcat 372
           | ||||  |||||| ||||
Sbjct: 128 attgaaggagctcgttcat 110
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>dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093A20, full
            insert sequence
          Length = 2902

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 112/141 (79%)
 Strand = Plus / Minus

                                                                        
Query: 292  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
            ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 2331 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 2272

                                                                        
Query: 352  ccactgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctgctc 411
            ||| |||| ||| ||  |||| || |  ||||| || || | ||||||||| ||||| ||
Sbjct: 2271 ccattgaataagttcattcatgttagttgaatccgaagacacacttgcacagacctgttc 2212

                                 
Query: 412  gtgtgcctgtttgagatcact 432
             || || ||||||| ||||||
Sbjct: 2211 atgagcatgtttgaaatcact 2191
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>gb|AY109177.1| Zea mays PCO089905 mRNA sequence
          Length = 1098

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                       
Query: 294 acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 353
           ||||||||||||| || | | || |||| || || |||||||||||||| || |||||||
Sbjct: 445 acatgaagtagctcagcgctttcctcttcctcgacccgccttcaccgtacaggtcgttcc 386

                                                
Query: 354 actgaacaagctcgntcatatttgncgaatcagatga 390
           | || | ||||||| |||| |||| ||| || |||||
Sbjct: 385 attggagaagctcgttcatgtttgccgagtcggatga 349
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 292      ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
                ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 12811218 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 12811277

                        
Query: 352      ccactgaa 359
                ||| ||||
Sbjct: 12811278 ccattgaa 12811285
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 292   ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
             ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 49434 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 49493

                     
Query: 352   ccactgaa 359
             ||| ||||
Sbjct: 49494 ccattgaa 49501
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 292      ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
                ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 12807981 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 12808040

                        
Query: 352      ccactgaa 359
                ||| ||||
Sbjct: 12808041 ccattgaa 12808048
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>dbj|AK063910.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A05, full
           insert sequence
          Length = 1227

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 94/118 (79%)
 Strand = Plus / Minus

                                                                       
Query: 294 acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 353
           ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 726 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 667

                                                                     
Query: 354 actgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctgctc 411
           | |||| ||| ||  |||| ||||  ||||||||||| |  |||||||| ||||||||
Sbjct: 666 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctgctc 609
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>ref|NM_116481.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT4G02480 mRNA, complete cds
          Length = 4287

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 292  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
            ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 3964 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 3905

               
Query: 352  cca 354
            |||
Sbjct: 3904 cca 3902
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>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
          Length = 135659

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 332   ccttcaccgtaaagctcgttccactgaacaagctcgntcatatttgncgaatcagatgat 391
             |||||||| || || || |||||||| ||||||||  ||||||||   || ||||| || 
Sbjct: 87934 ccttcaccatagagttcattccactgtacaagctctgtcatatttactgattcagaggaa 87993

                              
Query: 392   atacttgcacatacctg 408
             | |||||||||||||||
Sbjct: 87994 acacttgcacatacctg 88010
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>gb|AY090948.1| Arabidopsis thaliana unknown protein (At4g02480) mRNA, complete cds
          Length = 4184

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 292  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
            ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 3926 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 3867

               
Query: 352  cca 354
            |||
Sbjct: 3866 cca 3864
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>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                          
Query: 292    ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
              ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 117732 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 117791

                 
Query: 352    cca 354
              |||
Sbjct: 117792 cca 117794
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>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8
          Length = 94536

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 292   ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 351
             ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 28882 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 28823

                
Query: 352   cca 354
             |||
Sbjct: 28822 cca 28820
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>gb|AC146592.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0010P23 PCR product, complete sequence
          Length = 19234

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 91/115 (79%)
 Strand = Plus / Plus

                                                                         
Query: 294   acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 353
             ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 15428 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 15487

                                                                    
Query: 354   actgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctg 408
             | |||| ||| ||  |||| ||||  ||||||||||| |  |||||||| |||||
Sbjct: 15488 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctg 15542
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1247677 atcaattaagtgaactgtatt 1247697
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1295599 atcaattaagtgaactgtatt 1295619
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1258663 atcaattaagtgaactgtatt 1258683
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1154897 atcaattaagtgaactgtatt 1154917
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1234843 atcaattaagtgaactgtatt 1234863
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 91/115 (79%)
 Strand = Plus / Plus

                                                                            
Query: 294      acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 353
                ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 25685218 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 25685277

                                                                       
Query: 354      actgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctg 408
                | |||| ||| ||  |||| ||||  ||||||||||| |  |||||||| |||||
Sbjct: 25685278 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctg 25685332
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1219068 atcaattaagtgaactgtatt 1219088
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1219270 atcaattaagtgaactgtatt 1219290
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1261109 atcaattaagtgaactgtatt 1261129
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 91/115 (79%)
 Strand = Plus / Plus

                                                                            
Query: 294      acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 353
                ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 26003888 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 26003947

                                                                       
Query: 354      actgaacaagctcgntcatatttgncgaatcagatgatatacttgcacatacctg 408
                | |||| ||| ||  |||| ||||  ||||||||||| |  |||||||| |||||
Sbjct: 26003948 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctg 26004002
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 521    ttgtcaaggatttcccttatg 541
              |||||||||||||||||||||
Sbjct: 851754 ttgtcaaggatttcccttatg 851734
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 60      atcaattaagtgaactgtatt 80
               |||||||||||||||||||||
Sbjct: 1186628 atcaattaagtgaactgtatt 1186648
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>gb|K00981.1|NEUQA2MUD N.crassa qa-2 gene mutant 158-106, 5' flank
          Length = 505

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 478 tggtttgttttctgcttctgc 498
           |||||||||||||||||||||
Sbjct: 228 tggtttgttttctgcttctgc 208
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>dbj|AB029459.1| Salix gilgiana SgPG3 mRNA for polygalacturonase, complete cds
          Length = 1397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 195  gcctatgaatgaagaaaccaa 215
            |||||||||||||||||||||
Sbjct: 1305 gcctatgaatgaagaaaccaa 1285
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>gb|BT016450.1| Zea mays clone Contig283 mRNA sequence
          Length = 1470

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 agctcgttccactgaacaag 363
           ||||||||||||||||||||
Sbjct: 736 agctcgttccactgaacaag 755
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>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12,
             complete sequence
          Length = 187523

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   aatggtttgttttctgcttc 495
             ||||||||||||||||||||
Sbjct: 17583 aatggtttgttttctgcttc 17564
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>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence
          Length = 187659

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    tctctccttcttctctttgt 524
              ||||||||||||||||||||
Sbjct: 108601 tctctccttcttctctttgt 108620
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>gb|AC134303.2| Homo sapiens chromosome 19 clone LLNLR-265H6, complete sequence
          Length = 42236

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   gaactggcattacagaacaa 179
             ||||||||||||||||||||
Sbjct: 30228 gaactggcattacagaacaa 30209
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>gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, complete sequence
          Length = 216320

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ctatgaatgaagaaaccaac 216
             ||||||||||||||||||||
Sbjct: 58408 ctatgaatgaagaaaccaac 58389
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>emb|X14603.1|NCQA Neurospora crassa qa gene cluster
          Length = 18120

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  ggtttgttttctgcttctgc 498
            ||||||||||||||||||||
Sbjct: 2576 ggtttgttttctgcttctgc 2557
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>emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chromosome 4, complete
             sequence
          Length = 137493

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   cagatgatatacttgcacat 403
             ||||||||||||||||||||
Sbjct: 91528 cagatgatatacttgcacat 91547
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>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence
          Length = 199776

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   gaactggcattacagaacaa 179
             ||||||||||||||||||||
Sbjct: 15431 gaactggcattacagaacaa 15412
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>gb|AC108101.2| Homo sapiens chromosome 5 clone RP11-125H10, complete sequence
          Length = 144841

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   gtttgttttctgcttctgct 499
             ||||||||||||||||||||
Sbjct: 92432 gtttgttttctgcttctgct 92451
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>gb|AC092280.2| Homo sapiens chromosome 5 clone CTD-2028M21, complete sequence
          Length = 101502

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   gtttgttttctgcttctgct 499
             ||||||||||||||||||||
Sbjct: 86956 gtttgttttctgcttctgct 86975
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>gb|AC011466.6| Homo sapiens chromosome 19 clone CTC-453G23, complete sequence
          Length = 167272

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    tctctccttcttctctttgt 524
              ||||||||||||||||||||
Sbjct: 150478 tctctccttcttctctttgt 150497
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 476     aatggtttgttttctgcttc 495
               ||||||||||||||||||||
Sbjct: 4922998 aatggtttgttttctgcttc 4922979
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>gb|DQ002945.1| Dyacopterus spadiceus isolate DS10 12S ribosomal RNA, partial
           sequence; tRNA-Val gene, complete sequence; and 16S
           ribosomal RNA, partial sequence; mitochondrial
          Length = 1296

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 515 ttctctttgtcaaggatttc 534
           ||||||||||||||||||||
Sbjct: 773 ttctctttgtcaaggatttc 754
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>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete
             sequence
          Length = 245536

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   ctatgaatgaagaaaccaac 216
             ||||||||||||||||||||
Sbjct: 72587 ctatgaatgaagaaaccaac 72606
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 62      caattaagtgaactgtattc 81
               ||||||||||||||||||||
Sbjct: 2063040 caattaagtgaactgtattc 2063021
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>emb|BX648568.1|HSM808716 Homo sapiens mRNA; cDNA DKFZp779L0366 (from clone DKFZp779L0366)
          Length = 4765

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 505  tctctccttcttctctttgt 524
            ||||||||||||||||||||
Sbjct: 2103 tctctccttcttctctttgt 2084
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>gb|AC006229.17|AC006229 Homo sapiens chromosome 4 clone C0011D19, complete sequence
          Length = 186373

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    tctctccttcttctctttgt 524
              ||||||||||||||||||||
Sbjct: 158223 tctctccttcttctctttgt 158204
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>gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence
          Length = 181627

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    tctctccttcttctctttgt 524
              ||||||||||||||||||||
Sbjct: 179686 tctctccttcttctctttgt 179705



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    tctctccttcttctctttgt 524
              ||||||||||||||||||||
Sbjct: 151495 tctctccttcttctctttgt 151476
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>gb|AY104413.1| Zea mays PCO098503 mRNA sequence
          Length = 1571

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 agctcgttccactgaacaag 363
           ||||||||||||||||||||
Sbjct: 884 agctcgttccactgaacaag 903
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>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    tctctccttcttctctttgt 524
              ||||||||||||||||||||
Sbjct: 196605 tctctccttcttctctttgt 196586
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>gb|AC127589.4| Mus musculus BAC clone RP23-134K6 from 5, complete sequence
          Length = 209121

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   tctctttgtcaaggatttcc 535
             ||||||||||||||||||||
Sbjct: 38837 tctctttgtcaaggatttcc 38818
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>gb|K00977.1|NEUQA2WT N.crassa wild type qa-2 gene, 5' flank
          Length = 559

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 ggtttgttttctgcttctgc 498
           ||||||||||||||||||||
Sbjct: 270 ggtttgttttctgcttctgc 251
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>gb|K00982.1|NEUQA2MUE N.crassa qa-2 gene mutant 158-33, 5' flank
          Length = 505

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 ggtttgttttctgcttctgc 498
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208
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>gb|K00980.1|NEUQA2MUC N.crassa qa-2 gene mutants 162-4 and 162-5, 5' flank
          Length = 503

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 ggtttgttttctgcttctgc 498
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208
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>gb|K00979.1|NEUQA2MUB N.crassa qa-2 gene mutant 158-6, 5' flank
          Length = 573

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 ggtttgttttctgcttctgc 498
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208
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>gb|K00978.1|NEUQA2MUA N.crassa qa-2 gene mutant 158-99, 5' flank
          Length = 589

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 ggtttgttttctgcttctgc 498
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,527,757
Number of Sequences: 3902068
Number of extensions: 4527757
Number of successful extensions: 82433
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 82033
Number of HSP's gapped (non-prelim): 398
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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