>VE1_FPVL (P06455) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1) (Fragment)
          Length = 152

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 167 NFISPSHFFWRNPITSCKAFTMPGVILPFYPYPCTY 60
           +F +    FW  P+T CKA  +  V LP + Y  T+
Sbjct: 72  SFANSKSHFWLQPLTECKAALIDDVTLPCWDYVDTF 107

>XYLB_HUMAN (O75191) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 527

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
 Frame = +3

Query: 234 HDNTMTVNILSSWRNANMYAGSRNRVHYHVASE-----------KETCISSGCAPHIQEN 380
           + +T  ++++SS+  A+++ GS + + Y   S             + C+ + CAPH++E 
Sbjct: 190 YSHTERISLVSSFA-ASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGA-CAPHLEEK 247

Query: 381 LVPRFPEC 404
           L P  P C
Sbjct: 248 LSPPVPSC 255

>XYLB_PONPY (Q5R830) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 580

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
 Frame = +3

Query: 234 HDNTMTVNILSSWRNANMYAGSRNRVHYHVASE-----------KETCISSGCAPHIQEN 380
           + +T  ++++SS+  A+++ GS + + Y   S             + C+ + CAPH++E 
Sbjct: 187 YSHTERISLVSSFA-ASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGA-CAPHLEEK 244

Query: 381 LVPRFPEC 404
           L P  P C
Sbjct: 245 LGPPVPSC 252

>SYI_STRCO (Q9S2X5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1047

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 363 ERTHWICMFPSLTQHGNVHDFLNQHTYWHFSKRR 262
           E+T+W   FP   +HG   D+LN +  W  S+ R
Sbjct: 428 EKTNW---FPDAVKHGRYGDWLNNNIDWALSRNR 458

>SYI_STRAW (Q82AC9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1047

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 363 ERTHWICMFPSLTQHGNVHDFLNQHTYWHFSKRR 262
           E+T+W   FP   +HG   D+LN +  W  S+ R
Sbjct: 428 EKTNW---FPESVKHGRFGDWLNNNVDWALSRSR 458

>RNR_CHLTR (O84402) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 694

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 227 IKFSHHGTHKI*SYVWLV*SNFISPSHFFWRNPITSCKAFTMPGVILPFYPYPCT-YFCS 51
           + + H G + +  ++  V S++++P+    R     C +   PG ++P  P   +   CS
Sbjct: 229 LTYDHEGNYILGVHIADV-SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCS 287

Query: 50  IVEDVTRLTDXRFV 9
           +  +V RL    F+
Sbjct: 288 LKPNVDRLAVSVFM 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,760,434
Number of Sequences: 219361
Number of extensions: 1854625
Number of successful extensions: 3930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3930
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)