ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd13m23 |
|---|---|
| Clone Library Name | barley_pub |
>RS4_MAIZE (O22424) 40S ribosomal protein S4| Length = 265 Score = 55.8 bits (133), Expect = 3e-08 Identities = 25/27 (92%), Positives = 26/27 (96%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKRD 164 KG KPWVSLPKGKGIKL+IIEEQRKRD Sbjct: 230 KGNKPWVSLPKGKGIKLSIIEEQRKRD 256
>RS4_ARATH (P49204) 40S ribosomal protein S4| Length = 262 Score = 54.7 bits (130), Expect = 6e-08 Identities = 25/26 (96%), Positives = 25/26 (96%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KGTKPWVSLPKGKGIKLTIIEE RKR Sbjct: 230 KGTKPWVSLPKGKGIKLTIIEEARKR 255
>RS4_SOLTU (P46300) 40S ribosomal protein S4| Length = 264 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/26 (92%), Positives = 25/26 (96%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KGTKPWVSLPKGKGIKLTIIE+ RKR Sbjct: 230 KGTKPWVSLPKGKGIKLTIIEDARKR 255
>RS4_PRUAR (O81363) 40S ribosomal protein S4| Length = 261 Score = 52.8 bits (125), Expect = 2e-07 Identities = 23/26 (88%), Positives = 25/26 (96%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KGTKPWVSLPKGKGIKLTI+EE +KR Sbjct: 226 KGTKPWVSLPKGKGIKLTILEEAKKR 251
>RS4_GOSHI (P46299) 40S ribosomal protein S4| Length = 262 Score = 50.1 bits (118), Expect = 2e-06 Identities = 23/26 (88%), Positives = 24/26 (92%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KGTKPWVSLPK KGIKL+IIEE RKR Sbjct: 230 KGTKPWVSLPKRKGIKLSIIEEARKR 255
>RS4_XENTR (Q6PBC4) 40S ribosomal protein S4| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4_XENLA (P49401) 40S ribosomal protein S4| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4_CRIGR (P47961) 40S ribosomal protein S4| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4_CHICK (P47836) 40S ribosomal protein S4| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single copy abundant| mRNA protein) (SCR10) Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPW+SLP+GKGI+LTI EE+ KR Sbjct: 229 KGNKPWISLPRGKGIRLTIAEERDKR 254
>RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform| Length = 262 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KPWVSLP+GKG++LTI EE+ KR Sbjct: 229 KGNKPWVSLPRGKGVRLTIAEERDKR 254
>RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2| Length = 262 Score = 44.3 bits (103), Expect = 8e-05 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 230 GNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2| Length = 262 Score = 44.3 bits (103), Expect = 8e-05 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 230 GNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 44.3 bits (103), Expect = 8e-05 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 230 GNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 44.3 bits (103), Expect = 8e-05 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LTI EE+ KR Sbjct: 230 GNKPWISLPRGKGIRLTIAEERDKR 254
>RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 43.9 bits (102), Expect = 1e-04 Identities = 17/25 (68%), Positives = 22/25 (88%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LT+ EE+ KR Sbjct: 230 GNKPWISLPRGKGIRLTVAEERDKR 254
>RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 43.9 bits (102), Expect = 1e-04 Identities = 17/25 (68%), Positives = 22/25 (88%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LT+ EE+ KR Sbjct: 230 GNKPWISLPRGKGIRLTVAEERDKR 254
>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)| Length = 268 Score = 43.9 bits (102), Expect = 1e-04 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIE 182 KG KPWVSLPKGKGIKL+IIE Sbjct: 233 KGNKPWVSLPKGKGIKLSIIE 253
>RS4_DROME (P41042) 40S ribosomal protein S4| Length = 261 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/26 (69%), Positives = 23/26 (88%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG KP++SLPKGKG+KL+I EE+ KR Sbjct: 230 KGNKPYISLPKGKGVKLSIAEERDKR 255
>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4| Length = 262 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG K WVS+P+GKGI+LTI EE+ KR Sbjct: 229 KGNKAWVSIPRGKGIRLTIAEERDKR 254
>RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)| Length = 262 Score = 41.6 bits (96), Expect = 5e-04 Identities = 18/23 (78%), Positives = 21/23 (91%) Frame = -3 Query: 235 KPWVSLPKGKGIKLTIIEEQRKR 167 KPWVSLPKGKGIKL+I EE+ +R Sbjct: 234 KPWVSLPKGKGIKLSISEERDRR 256
>RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 41.6 bits (96), Expect = 5e-04 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LT+ E+ KR Sbjct: 230 GNKPWISLPRGKGIRLTVAAERDKR 254
>RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1| Length = 262 Score = 41.6 bits (96), Expect = 5e-04 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -3 Query: 241 GTKPWVSLPKGKGIKLTIIEEQRKR 167 G KPW+SLP+GKGI+LT+ E+ KR Sbjct: 230 GNKPWISLPRGKGIRLTVAAERDKR 254
>RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)| Length = 260 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/23 (69%), Positives = 21/23 (91%) Frame = -3 Query: 235 KPWVSLPKGKGIKLTIIEEQRKR 167 KP++SLPKGKGIKL+I EE+ +R Sbjct: 232 KPYISLPKGKGIKLSIAEERDRR 254
>RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C| Length = 262 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -3 Query: 235 KPWVSLPKGKGIKLTIIEEQRKR 167 K W+SLPKGKG+KL+I EE+ +R Sbjct: 233 KSWISLPKGKGVKLSITEERDRR 255
>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B| Length = 262 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -3 Query: 235 KPWVSLPKGKGIKLTIIEEQRKR 167 K W+SLPKGKG+KL+I EE+ +R Sbjct: 233 KSWISLPKGKGVKLSITEERDRR 255
>RS4A_SCHPO (P87158) 40S ribosomal protein S4-A| Length = 262 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -3 Query: 235 KPWVSLPKGKGIKLTIIEEQRKR 167 K W+SLPKGKG+KL+I EE+ +R Sbjct: 233 KSWISLPKGKGVKLSITEERDRR 255
>RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)| Length = 260 Score = 35.0 bits (79), Expect = 0.051 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 +G K +SLPKGKGIKL+I EE+ R Sbjct: 230 EGNKSLISLPKGKGIKLSIAEERDAR 255
>RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4| Length = 259 Score = 33.5 bits (75), Expect = 0.15 Identities = 16/26 (61%), Positives = 19/26 (73%) Frame = -3 Query: 244 KGTKPWVSLPKGKGIKLTIIEEQRKR 167 KG K VSLP G GI+L+I EE+ KR Sbjct: 229 KGNKALVSLPTGAGIRLSIAEERDKR 254
>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 709 Score = 27.7 bits (60), Expect = 8.2 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = +1 Query: 211 PWGGSPKAWCPC 246 PWG +P AWCPC Sbjct: 449 PWGAAP-AWCPC 459 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,207,761 Number of Sequences: 219361 Number of extensions: 494743 Number of successful extensions: 963 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 963 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
