ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (... 29 3.9
2Y1322_FUSNN (P58819) Hypothetical zinc metalloprotease FN1322 (E... 28 6.7
3HIS7_METTH (Q50504) Imidazoleglycerol-phosphate dehydratase (EC ... 28 8.8
4KDSA_CHLCV (Q824W7) 2-dehydro-3-deoxyphosphooctonate aldolase (E... 28 8.8

>Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (EC 3.4.24.-)|
          Length = 335

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 422 AIGSFSAVFXRHEAAHFLVAYLXGLPISGCSLDIG 318
           A+ +FSA+   HE  HF+VA L G+ +   ++ +G
Sbjct: 6   ALLAFSALILVHELGHFIVAKLNGIYVEEFAIGMG 40



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>Y1322_FUSNN (P58819) Hypothetical zinc metalloprotease FN1322 (EC 3.4.24.-)|
          Length = 339

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 422 AIGSFSAVFXRHEAAHFLVAYLXGLPISGCSLDIGKQ 312
           A+     +   HE  HFL A L  +P+S  S+ +G Q
Sbjct: 6   AVVMLGLIIFVHELGHFLTAKLFKMPVSEFSIGMGPQ 42



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>HIS7_METTH (Q50504) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 194

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 22  DGLVVGDLKSEEDG*LANDLVV---LQTHSSLSGHGDH 126
           D  V+GD+KS+  G     L V   +  H+S+ G  DH
Sbjct: 125 DDAVIGDVKSQNIGHFIESLAVSAAMNIHASVRGRNDH 162



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>KDSA_CHLCV (Q824W7) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS)
          Length = 269

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 122 SPWPDRLLWVWSTTRSLANQPSSSLFRSPTTN 27
           +P+ DR+ W++ ++   AN+ S + +R P  N
Sbjct: 33  TPYADRIHWIFKSSYDKANRSSINSYRGPGLN 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,093,317
Number of Sequences: 219361
Number of extensions: 1188211
Number of successful extensions: 2947
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2947
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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