>YPGQ_BACSU (P54168) Hypothetical protein ypgQ|
          Length = 205

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 57/165 (34%), Positives = 86/165 (52%)
 Frame = -2

Query: 666 AALLHDIGDYKYTKDNAEDMSIVKRFLGEVGLEEGQKEEIVAIITGMGFKNEVSKKLNAE 487
           AAL+HD+ D K        +S V   L   G+ +   + ++ IIT M F++   K     
Sbjct: 54  AALVHDLIDVKLPDTVRLSVSEVYDQLVFFGVGKENADRVIHIITRMSFRDR-GKLAKEP 112

Query: 486 TTLEFAIVQDADRLDAIGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKEKYMSKEEKQT 307
            ++E   VQDADRLDAIGA+G+AR F + G+K   L+                   ++Q+
Sbjct: 113 LSIEGKAVQDADRLDAIGAVGIARAFMFAGAKGHGLYG------------------DEQS 154

Query: 306 SINHFHEKLFKLKDMMKTEAGKKRAEKRHKFMETFVAEFYEEWSG 172
           +  HF  KL +LKDMM T+  ++ AE+RH FM  FV +  ++  G
Sbjct: 155 AYAHFFHKLLRLKDMMNTDTARELAEERHNFMLQFVRQLEKDIPG 199

>YEDJ_ECOLI (P46144) Hypothetical protein yedJ|
          Length = 231

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
 Frame = -2

Query: 666 AALLHDIGDYKYTKDNAEDMSIV-----KRFLGEVGLEEGQKEEIVAI---ITGMGFKNE 511
           A   HDI          +  SI+     +R L E   E+   E+I A+   I    F  +
Sbjct: 54  ACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREE-FEQFPAEKIEAVCHAIAAHSFSAQ 112

Query: 510 VSKKLNAETTLEFAIVQDADRLDAIGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKEKY 331
           +     A  T E  IVQDADRL+A+GAIG+AR F   G+   AL D      D  ++ + 
Sbjct: 113 I-----APLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFD----GEDPFAQHRP 163

Query: 330 MSKEEKQTSINHFHEKLFKLKDMMKTEAGKKRAEKRHKFMETFVAEFYEEWSG 172
           +  ++K+ +++HF  KL KL   M+T  GK+ A+    F+  F+A+   E +G
Sbjct: 164 L--DDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAG 214

>YL803_MIMIV (Q5UR59) Hypothetical protein L803|
          Length = 243

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
 Frame = -2

Query: 666 AALLHDIGDYKYTKDNAEDMSIVKRFLGEVGLEEGQKEEIVAIITGMGFKNE-------V 508
           AA+LHD+ D K    + +  +   +++ +    +   E I++  T   FK         V
Sbjct: 60  AAMLHDVDDPKIFSQSIDYQNA--KYILDTIFTKMSFENIISDCTYDVFKQGIVTLISLV 117

Query: 507 SKKLNAETTLE---FAIVQDADRLDAIGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKE 337
           S   N +  +E    AI +DADRL+AIG IG+ RC  Y        +  +  PR   S+E
Sbjct: 118 SCSKNGDDGVEESWMAIPRDADRLEAIGKIGIQRCTDYANHIKLPYYLDST-PRAKTSEE 176

Query: 336 -----------KYMSKEEKQTSINHFHEKLFKL 271
                      +Y +  +  + I+H+++KL  +
Sbjct: 177 ALSFANRDRFDRYKNGHKSVSMIDHYYDKLLHI 209

>PGK_HAEDU (Q7VMV0) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 391

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 26/86 (30%), Positives = 40/86 (46%)
 Frame = -2

Query: 657 LHDIGDYKYTKDNAEDMSIVKRFLGEVGLEEGQKEEIVAIITGMGFKNEVSKKLNAETTL 478
           L  + DY    D    + +V+ +L   G+E  Q E +V     +   N+  KK +AE   
Sbjct: 74  LQPVVDYLNASDLGVPVRLVRDYLD--GVEVNQNEIVVLENVRI---NKGEKKNDAELAK 128

Query: 477 EFAIVQDADRLDAIGAIGVARCFTYG 400
           ++A + D   +DA G    A C TYG
Sbjct: 129 KYAALCDIFVMDAFGTAHRAECSTYG 154

>HRP_PLABE (Q08168) 58 kDa phosphoprotein (Heat shock-related protein) (HRP)|
          Length = 423

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 378 HDPNVLPRDNLSKEKYMSKEEKQT-SINHFHEK--LFKLKDMMKTEAGKKRAEKRHK 217
           +D N+     L +EKY    EK+   IN   EK  L + K++ K  A KK+AEK +K
Sbjct: 212 YDENLWDMQKLIQEKYKKIYEKRRYKINKEEEKQRLKREKELKKKLAAKKKAEKMYK 268

>RP1_CANFA (Q8MJ04) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2141

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
 Frame = -2

Query: 642  DYKYTKDNAEDMSIVKRFL------GEVGLEEGQKEEIVAIITGMGFKNEVSKKLNAETT 481
            D++Y K+N ED ++   F        +    +GQ E     + G+  KN VSK  N+  T
Sbjct: 805  DFRYCKNNFEDQNLFPMFNFLEQRPSDFCGPQGQAEIASWYLGGITKKNLVSKVNNSHIT 864

Query: 480  LEFAIVQDADRLDAIGAIGVARCFTYGGSKNS 385
            L+    Q  D+L +   +   +  T   S  S
Sbjct: 865  LKTQKKQKGDKLKSSTTVSKQQVTTRANSLGS 896

>DNAK2_SYNPX (Q7U3C4) Chaperone protein dnaK2 (Heat shock protein 70-2) (Heat|
           shock 70 kDa protein 2) (HSP70-2)
          Length = 637

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 354 DNLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTEAGKKRAEKRHKFMETFVAEFYE 184
           D   +EK   K + +T +    +++ +L D ++ +A  K  EKR K  E   AE Y+
Sbjct: 520 DKEKREKIDLKNQAETLVYQAEKQMGELGDKVEADAKAKVDEKRTKLQEAINAEDYD 576

>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 13)
           (Ubiquitin-specific-processing protease 13)
           (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3)
          Length = 863

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 585 GEVGLEEGQKEEIVAIITGMGF-KNEVSKKLNA 490
           G  GL+    EEIVAIIT MGF +N+  + L A
Sbjct: 720 GASGLDNQPPEEIVAIITSMGFQRNQAIQALRA 752

>EX1_HAEIN (P45188) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonuclease I) (DNA|
           deoxyribophosphodiesterase) (dRPase)
          Length = 473

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +1

Query: 352 IPRKYVRIMQCTVLAPSICKTSCNANRTNCIQTICILHDCKLKSGLCIKLL*NLIFESHP 531
           +P K V I +C +LAP+       ANR    + +C+ +  KL++   I+     IF    
Sbjct: 294 VPLKLVHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIF---- 349

Query: 532 CNNGHYFXXXXXXETHLSKKPFDDA 606
            N    F      ET L    F +A
Sbjct: 350 -NEERQFASNDNVETELYNGFFSNA 373

>FRAP_HUMAN (P42345) FKBP12-rapamycin complex-associated protein (FK506-binding|
            protein 12-rapamycin complex-associated protein 1)
            (Rapamycin target protein) (RAPT1) (Mammalian target of
            rapamycin) (MTOR)
          Length = 2549

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 392  LLPPYVKHLATPIAPIASRRSASCTIANSRVVSALSF--FETSFLNPI 529
            LLPP VK    P AP+ SR++A  T+   R+  +L F  + +  ++PI
Sbjct: 1114 LLPPIVKLFDAPEAPLPSRKAALETV--DRLTESLDFTDYASRIIHPI 1159

>ATP8_PELSU (O79674) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 55

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 497 SFFETSFLNPIPVIMATISSFCPSSRPTSPRNLLT 601
           S F TS+L  I +++  I S  P++ PT+ +N+LT
Sbjct: 11  SIFITSWLILIIILLPKIKSHIPNNSPTNKKNMLT 45

>CDC15_SCHPO (Q09822) Cell division control protein 15|
          Length = 927

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 431 APIASRRSASCTIANSRVVSALSFFETSFLNPIPVIMATISSFCPSSRPTSPRNL 595
           +P+ SRRS++   +  R  S+LS  ++  ++P P   A   S     RP+S  +L
Sbjct: 702 SPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMSL 756


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,241,213
Number of Sequences: 219361
Number of extensions: 2065349
Number of successful extensions: 6222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6213
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)