ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_STRPU (P15547) Cytochrome b 31 2.1
2PEBP2_MOUSE (Q8VIN1) Phosphatidylethanolamine-binding protein 2 ... 31 2.1
3POLG_BOVEV (P12915) Genome polyprotein [Contains: Coat protein V... 30 6.2

>CYB_STRPU (P15547) Cytochrome b|
          Length = 380

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 209 SIITTW-WGAFSFGNSTACXLCKTYLGFMGVKAANVPSCHFFPFDXVYYFISAQILVINI 33
           +II  W WG FS  N+T                       FFPF  ++ FI A + VI++
Sbjct: 159 TIIVQWLWGGFSVDNATLT--------------------RFFPFHFLFPFIIAALAVIHL 198

Query: 32  XFSH 21
            F H
Sbjct: 199 VFLH 202



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>PEBP2_MOUSE (Q8VIN1) Phosphatidylethanolamine-binding protein 2 (PEBP-2)|
          Length = 187

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 268 RKTIYRKWHYYLVIN*KINKYAS 336
           +K +YR+WH++LV+N K N  +S
Sbjct: 77  KKPVYREWHHFLVVNMKGNDISS 99



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>POLG_BOVEV (P12915) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2174

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 333 CIFIDLSIYYQIIMPLPVNRLSKLAQVRSILSTSGEE 223
           CI  D     +I +P  VN L ++AQV SIL  +  E
Sbjct: 339 CILPDFQPTLEIFIPGKVNNLLEIAQVESILEANNRE 375


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,149,626
Number of Sequences: 219361
Number of extensions: 1349294
Number of successful extensions: 3427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3424
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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