>PRP18_RAT (Q9JKB8) Pre-mRNA-splicing factor 18 (PRP18 homolog) (Potassium|
           channel regulatory factor)
          Length = 342

 Score =  152 bits (383), Expect = 9e-37
 Identities = 69/122 (56%), Positives = 95/122 (77%)
 Frame = -3

Query: 579 ATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWP 400
           AT KQ   YL PLF   RK+ LP DI++++  I+   ++R+Y++A D Y+++AIGNAPWP
Sbjct: 221 ATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWP 280

Query: 399 IGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFN 220
           IGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT+CQ+ +P  PSK VE+N
Sbjct: 281 IGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYN 340

Query: 219 SL 214
           +L
Sbjct: 341 AL 342

>PRP18_MOUSE (Q8BM39) Pre-mRNA-splicing factor 18 (PRP18 homolog)|
          Length = 342

 Score =  152 bits (383), Expect = 9e-37
 Identities = 69/122 (56%), Positives = 95/122 (77%)
 Frame = -3

Query: 579 ATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWP 400
           AT KQ   YL PLF   RK+ LP DI++++  I+   ++R+Y++A D Y+++AIGNAPWP
Sbjct: 221 ATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWP 280

Query: 399 IGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFN 220
           IGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT+CQ+ +P  PSK VE+N
Sbjct: 281 IGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYN 340

Query: 219 SL 214
           +L
Sbjct: 341 AL 342

>PRP18_HUMAN (Q99633) Pre-mRNA-splicing factor 18 (PRP18 homolog) (hPRP18)|
          Length = 342

 Score =  152 bits (383), Expect = 9e-37
 Identities = 69/122 (56%), Positives = 95/122 (77%)
 Frame = -3

Query: 579 ATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWP 400
           AT KQ   YL PLF   RK+ LP DI++++  I+   ++R+Y++A D Y+++AIGNAPWP
Sbjct: 221 ATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWP 280

Query: 399 IGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFN 220
           IGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT+CQ+ +P  PSK VE+N
Sbjct: 281 IGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYN 340

Query: 219 SL 214
           +L
Sbjct: 341 AL 342

>PRP18_SCHPO (O94406) Pre-mRNA-splicing factor 18|
          Length = 343

 Score =  102 bits (254), Expect = 8e-22
 Identities = 50/111 (45%), Positives = 72/111 (64%)
 Frame = -3

Query: 573 FKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIG 394
           F+Q  + L  L +    + L DDI K++  I   C K ++++A D Y++L IGNAPWPIG
Sbjct: 229 FRQAKQDLDVLIQLIVDEALNDDIFKSIAEICYRCQKHEFVKANDMYLRLTIGNAPWPIG 288

Query: 393 VTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALP 241
           VTMVGIHERSA +++  N  ++I+ DE  RK LQ++KR +T  +R    LP
Sbjct: 289 VTMVGIHERSAHQRLQANPSSNILKDEKKRKCLQALKRFITFQERESSNLP 339

>PRP18_YEAST (P33411) Pre-mRNA-splicing factor 18|
          Length = 251

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
 Frame = -3

Query: 543 LFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERS 364
           L +  R ++ PD +      +      ++   A+  Y+KL+IGN  WPIGVT VGIH RS
Sbjct: 147 LLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARS 206

Query: 363 AREKIY-TNSVAHIMNDETTRKYLQSIKRLMT 271
           A  KI    + A+IM DE TR ++ SIKRL+T
Sbjct: 207 AHSKIQGGRNAANIMIDERTRLWITSIKRLIT 238

>BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 1076

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 25/81 (30%), Positives = 40/81 (49%)
 Frame = -3

Query: 384 VGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFNSLANG 205
           +G+HE+++   +Y+   A I   E+ R  L + +   +L    Y  LPS   ++ +LA G
Sbjct: 382 LGVHEKAS---LYSEEKAKIARAESERHDLATGEMQASL---DYLGLPSSLQKYRALAQG 435

Query: 204 SDLQALLSEEKDPTKGPSEER 142
           S   A+L    DP  GP   R
Sbjct: 436 SGSNAMLDSLADP--GPEVMR 454

>MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5)|
          Length = 505

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 356 SRAERSWIPTIVTPIGHGAFPMASLMYWSIACK 454
           S +E SW P+I+T + H A P+ S++     C+
Sbjct: 48  SNSETSWFPSILTAVLHMAGPLCSILVGRFGCR 80

>MSI3_ARATH (O22469) WD-40 repeat protein MSI3|
          Length = 424

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 59  ITQRPQTSICDPSLWLKHHSFDA-GISRSLSSEGPFVGSFSSDRRAC 196
           ++ +PQTS CDP L L  H  +  G++ S   EG ++ S S D+R C
Sbjct: 150 LSGKPQTSECDPDLRLMGHEQEGYGLAWSSFKEG-YLLSGSQDQRIC 195

>XPP2_HUMAN (O43895) Xaa-Pro aminopeptidase 2 precursor (EC 3.4.11.9) (X-Pro|
           aminopeptidase 2) (Membrane-bound aminopeptidase P)
           (Membrane-bound APP) (Membrane-bound AmP) (mAmP)
           (Aminoacylproline aminopeptidase)
          Length = 674

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 474 CCMKRDYLQAMDQYIKLAIGNAPWPIGV--TMVGIHERSAREKIYTNSVAHIM 322
           C    DY Q  D     ++G+    IG   TM GI+E   +EK+ T++ + +M
Sbjct: 299 CVQIEDYSQVRDSIQAYSLGDVRIWIGTSYTMYGIYEMIPKEKLVTDTYSPVM 351

>ASE1_YEAST (P50275) Anaphase spindle elongation protein|
          Length = 885

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = -3

Query: 453 LQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLM 274
           L  +  Y+ L I N    IG++M  I +   R+ I   S    +N+E+ +   + IK   
Sbjct: 265 LSTLTAYL-LQIENGKGDIGLSMKFIIDN--RKDILKGSAFKTINEESVKHMNEVIKIYE 321

Query: 273 TLCQRRYPALPSKSVEFNSLAN--GSDLQALLSEE 175
              +RR+ ++ +K V  +S+    G+ L  L+ E+
Sbjct: 322 EEYERRFKSVLTKKVSISSICEQLGTPLATLIGED 356

>DDBX_BOVIN (P52898) Dihydrodiol dehydrogenase 3 (EC 1.-.-.-) (Prostaglandin F|
           synthase)
          Length = 323

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 175 LLR*KGLQVTPICQAVELH*FGGQSRIAPLAKGH 276
           +L   GL+  P+C  VE H +  QS++    K H
Sbjct: 176 ILNKPGLKYKPVCNQVECHPYFNQSKLLDFCKSH 209

>SC23B_MOUSE (Q9D662) Protein transport protein Sec23B (SEC23-related protein B)|
          Length = 767

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
 Frame = -3

Query: 489 LFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIGV------TMVGIHERSAR--EKIYTNSV 334
           L++VD C++ D LQA+ + +++++   P    V       MV +HE S     K Y    
Sbjct: 132 LYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRG 191

Query: 333 AHIMNDETTRKYLQSIKRLMTLCQRRYPALPSK 235
              +  +  ++ L   K  M + Q R PA P +
Sbjct: 192 TKDLTAKQIQEMLGLTKSAMPVQQAR-PAQPQE 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,087,251
Number of Sequences: 219361
Number of extensions: 1878662
Number of successful extensions: 5104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5103
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)