ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13m15 |
|---|---|
| Clone Library Name | barley_pub |
>PRP18_RAT (Q9JKB8) Pre-mRNA-splicing factor 18 (PRP18 homolog) (Potassium| channel regulatory factor) Length = 342 Score = 168 bits (425), Expect = 2e-41 Identities = 79/150 (52%), Positives = 110/150 (73%) Frame = -2 Query: 679 KRLLNEWNQELDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLF 500 K LL W +EL+ + KR+ +GK AT KQ YL PLF RK+ LP DI++++ Sbjct: 193 KFLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITD 252 Query: 499 IVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTR 320 I+ ++R+Y++A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET R Sbjct: 253 IIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQR 312 Query: 319 KYLQSIKRLMTLCQRRYPALPSKSVEFNSL 230 KY+Q +KRLMT+CQ+ +P PSK VE+N+L Sbjct: 313 KYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>PRP18_MOUSE (Q8BM39) Pre-mRNA-splicing factor 18 (PRP18 homolog)| Length = 342 Score = 167 bits (423), Expect = 3e-41 Identities = 79/150 (52%), Positives = 110/150 (73%) Frame = -2 Query: 679 KRLLNEWNQELDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLF 500 K LL W +EL+ + KR+ +GK AT KQ YL PLF RK+ LP DI++++ Sbjct: 193 KFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITD 252 Query: 499 IVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTR 320 I+ ++R+Y++A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET R Sbjct: 253 IIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQR 312 Query: 319 KYLQSIKRLMTLCQRRYPALPSKSVEFNSL 230 KY+Q +KRLMT+CQ+ +P PSK VE+N+L Sbjct: 313 KYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>PRP18_HUMAN (Q99633) Pre-mRNA-splicing factor 18 (PRP18 homolog) (hPRP18)| Length = 342 Score = 167 bits (423), Expect = 3e-41 Identities = 79/150 (52%), Positives = 110/150 (73%) Frame = -2 Query: 679 KRLLNEWNQELDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLF 500 K LL W +EL+ + KR+ +GK AT KQ YL PLF RK+ LP DI++++ Sbjct: 193 KFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITD 252 Query: 499 IVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTR 320 I+ ++R+Y++A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET R Sbjct: 253 IIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQR 312 Query: 319 KYLQSIKRLMTLCQRRYPALPSKSVEFNSL 230 KY+Q +KRLMT+CQ+ +P PSK VE+N+L Sbjct: 313 KYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>PRP18_SCHPO (O94406) Pre-mRNA-splicing factor 18| Length = 343 Score = 104 bits (259), Expect = 3e-22 Identities = 52/135 (38%), Positives = 80/135 (59%) Frame = -2 Query: 661 WNQELDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCM 482 W+ L + +++ + F+Q + L L + + L DDI K++ I C Sbjct: 205 WDNFLSSKSINSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDIFKSIAEICYRCQ 264 Query: 481 KRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSI 302 K ++++A D Y++L IGNAPWPIGVTMVGIHERSA +++ N ++I+ DE RK LQ++ Sbjct: 265 KHEFVKANDMYLRLTIGNAPWPIGVTMVGIHERSAHQRLQANPSSNILKDEKKRKCLQAL 324 Query: 301 KRLMTLCQRRYPALP 257 KR +T +R LP Sbjct: 325 KRFITFQERESSNLP 339
>PRP18_YEAST (P33411) Pre-mRNA-splicing factor 18| Length = 251 Score = 69.7 bits (169), Expect = 8e-12 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Frame = -2 Query: 559 LFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERS 380 L + R ++ PD + + ++ A+ Y+KL+IGN WPIGVT VGIH RS Sbjct: 147 LLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARS 206 Query: 379 AREKIY-TNSVAHIMNDETTRKYLQSIKRLMT 287 A KI + A+IM DE TR ++ SIKRL+T Sbjct: 207 AHSKIQGGRNAANIMIDERTRLWITSIKRLIT 238
>PHYB1_LYCES (Q9ZS62) Phytochrome B1| Length = 1131 Score = 37.0 bits (84), Expect = 0.056 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 14/127 (11%) Frame = -2 Query: 670 LNEWNQELDDMTELEKRTAKGKSMF--ATFKQCARYLSPLF------------EFCRKKV 533 +N WN+++ ++T L AKGKS+ +K+ L E + Sbjct: 646 INGWNEKVVELTGLSAEEAKGKSLVHDLLYKESQESAEKLLYNALRGVEGKNVEIKLRTF 705 Query: 532 LPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNS 353 + + KA+ +V+ C RDY ++ +GV+ VG + EKI + Sbjct: 706 GAEQVEKAVFLVVNACSSRDYTNSI--------------VGVSFVG--QDVTGEKIVMDK 749 Query: 352 VAHIMND 332 HI D Sbjct: 750 FIHIQGD 756
>MIAA_BURPS (Q63R58) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 324 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/76 (31%), Positives = 38/76 (50%) Frame = -2 Query: 649 LDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDY 470 LD T+ RT + K +FAT + C R L+ L + +P+ I +VDCC Sbjct: 262 LDGCTDY--RTMRDKGIFATRQLCKRQLTWL------RAMPERI------VVDCCAPDAT 307 Query: 469 LQAMDQYIKLAIGNAP 422 ++A+D ++ G AP Sbjct: 308 VRAVDALERVLDGRAP 323
>MIAA_BURMA (Q62HE6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 324 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/76 (31%), Positives = 38/76 (50%) Frame = -2 Query: 649 LDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDY 470 LD T+ RT + K +FAT + C R L+ L + +P+ I +VDCC Sbjct: 262 LDGCTDY--RTMRDKGIFATRQLCKRQLTWL------RAMPERI------VVDCCAPDAT 307 Query: 469 LQAMDQYIKLAIGNAP 422 ++A+D ++ G AP Sbjct: 308 VRAVDALERVLDGRAP 323
>BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO| domain-containing protein 1) Length = 1076 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = -2 Query: 400 VGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFNSLANG 221 +G+HE+++ +Y+ A I E+ R L + + +L Y LPS ++ +LA G Sbjct: 382 LGVHEKAS---LYSEEKAKIARAESERHDLATGEMQASL---DYLGLPSSLQKYRALAQG 435 Query: 220 SDLQALLSEEKDPTKGPSEER 158 S A+L DP GP R Sbjct: 436 SGSNAMLDSLADP--GPEVMR 454
>PHYB_TOBAC (P29130) Phytochrome B| Length = 1132 Score = 32.3 bits (72), Expect = 1.4 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%) Frame = -2 Query: 670 LNEWNQELDDMTELEKRTAKGKSMF--ATFKQCARYLSPLF------------EFCRKKV 533 +N WN ++ ++T+L A GKS+ K+ L E + Sbjct: 647 INGWNAKVAELTDLSVEEAMGKSLVHDLVHKESQETAEKLLFNALRGEEDKNVEIKLRTF 706 Query: 532 LPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNS 353 P+ ++KA+ +V+ C +DY + +GV VG + +K+ + Sbjct: 707 GPEQLKKAVFVVVNACSSKDYTNNI--------------VGVCFVG--QDVTGQKVVMDK 750 Query: 352 VAHIMND 332 HI D Sbjct: 751 FIHIQGD 757
>MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5)| Length = 505 Score = 31.6 bits (70), Expect = 2.4 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 372 SRAERSWIPTIVTPIGHGAFPMASLMYWSIACK 470 S +E SW P+I+T + H A P+ S++ C+ Sbjct: 48 SNSETSWFPSILTAVLHMAGPLCSILVGRFGCR 80
>MSI3_ARATH (O22469) WD-40 repeat protein MSI3| Length = 424 Score = 31.6 bits (70), Expect = 2.4 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +3 Query: 75 ITQRPQTSICDPSLWLKHHSFDA-GISRSLSSEGPFVGSFSSDRRAC 212 ++ +PQTS CDP L L H + G++ S EG ++ S S D+R C Sbjct: 150 LSGKPQTSECDPDLRLMGHEQEGYGLAWSSFKEG-YLLSGSQDQRIC 195
>PHYB_SORBI (P93527) Phytochrome B| Length = 1178 Score = 30.0 bits (66), Expect = 6.9 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Frame = -2 Query: 670 LNEWNQELDDMTELEKRTAKGKSMF--ATFKQCARYLSPLF------------EFCRKKV 533 +N WN ++ ++T L A GKS+ FK+ + L E K Sbjct: 692 INGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIVEKLLSRALRGEEDKNVEIKLKTF 751 Query: 532 LPDDIRKALLFIVDCCMKRDYLQ 464 + A+ IV+ C RDY Q Sbjct: 752 GSEQSNGAIFVIVNACSSRDYTQ 774
>XPP2_HUMAN (O43895) Xaa-Pro aminopeptidase 2 precursor (EC 3.4.11.9) (X-Pro| aminopeptidase 2) (Membrane-bound aminopeptidase P) (Membrane-bound APP) (Membrane-bound AmP) (mAmP) (Aminoacylproline aminopeptidase) Length = 674 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = -2 Query: 490 CCMKRDYLQAMDQYIKLAIGNAPWPIGV--TMVGIHERSAREKIYTNSVAHIM 338 C DY Q D ++G+ IG TM GI+E +EK+ T++ + +M Sbjct: 299 CVQIEDYSQVRDSIQAYSLGDVRIWIGTSYTMYGIYEMIPKEKLVTDTYSPVM 351
>PHYB_ARATH (P14713) Phytochrome B| Length = 1172 Score = 30.0 bits (66), Expect = 6.9 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 14/82 (17%) Frame = -2 Query: 670 LNEWNQELDDMTELEKRTAKGKSMFA--TFKQCARYLSPLF------------EFCRKKV 533 +N WN ++ ++T L A GKS+ + +K+ ++ L E K Sbjct: 676 INGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTF 735 Query: 532 LPDDIRKALLFIVDCCMKRDYL 467 P+ KA+ +V+ C +DYL Sbjct: 736 SPELQGKAVFVVVNACSSKDYL 757
>PHYB_ORYSA (P25764) Phytochrome B| Length = 1171 Score = 29.6 bits (65), Expect = 9.0 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Frame = -2 Query: 670 LNEWNQELDDMTELEKRTAKGKSMF--ATFKQCARYLSPLF------------EFCRKKV 533 +N WN ++ ++T L A GKS+ FK+ ++ L E K Sbjct: 685 INGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRALRGDEDKNVEIKLKTF 744 Query: 532 LPDDIRKALLFIVDCCMKRDY 470 P+ + + IV+ C RDY Sbjct: 745 GPEQSKGPIFVIVNACSTRDY 765
>ASE1_YEAST (P50275) Anaphase spindle elongation protein| Length = 885 Score = 29.6 bits (65), Expect = 9.0 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = -2 Query: 469 LQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLM 290 L + Y+ L I N IG++M I + R+ I S +N+E+ + + IK Sbjct: 265 LSTLTAYL-LQIENGKGDIGLSMKFIIDN--RKDILKGSAFKTINEESVKHMNEVIKIYE 321 Query: 289 TLCQRRYPALPSKSVEFNSLAN--GSDLQALLSEE 191 +RR+ ++ +K V +S+ G+ L L+ E+ Sbjct: 322 EEYERRFKSVLTKKVSISSICEQLGTPLATLIGED 356 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,207,274 Number of Sequences: 219361 Number of extensions: 2253229 Number of successful extensions: 6189 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6186 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
