>Y830_METTH (O26918) Hypothetical protein MTH830|
          Length = 329

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 650 SDYPDGLCAEEFRS--VACVRGSIKFLAFNKFVQREPDEKFGLTVWTLHPDHSGWGRSYK 477
           + + +G   EE+RS  +   R ++K +          DEKF  TV ++ P HSG G   +
Sbjct: 55  TSHAEGKLREEYRSKIMEAARRTLKHIG--------SDEKFHFTVRSMFPAHSGLGSGTQ 106

Query: 476 CSIADIWANANY 441
            S+A     A Y
Sbjct: 107 LSLATARLVAEY 118

>ZSWM6_MOUSE (Q80TB7) Zinc finger SWIM domain-containing protein 6 (Fragment)|
          Length = 1017

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 162 NCTNRACFHLSPVILFSVHTELTGKELGIDMPLPLFTDLDINILQVNTKQILGFEHWL-T 338
           +C N+  F+ + V+  S++     +++ + +P+         + Q+N  Q+  F  +L T
Sbjct: 65  SCGNKDIFYCAHVVALSLYRIRKPEQVKLHLPI------SETLFQMNRDQLQKFVQYLIT 118

Query: 339 VHHTEII 359
           VHHTE++
Sbjct: 119 VHHTEVL 125

>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1390

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 186 HLSPVILFSVHTELTGKELGIDMPLPLFTDLDINILQVNTKQIL 317
           HL P++  + + +  G ++ + +PL +   L+   L ++T  IL
Sbjct: 448 HLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEARALMMSTNNIL 491


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,319,456
Number of Sequences: 219361
Number of extensions: 2294491
Number of successful extensions: 5457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5455
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)