Clone Name | rbasd14b14 |
---|---|
Clone Library Name | barley_pub |
>gb|AE017245.1| Mycoplasma synoviae 53, complete genome Length = 799476 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 ggtgatcctgttttcggtgcac 218 |||||||||||||||||||||| Sbjct: 154018 ggtgatcctgttttcggtgcac 153997
>emb|CT025155.9| Mouse DNA sequence from clone RP23-228F18 on chromosome 16, complete sequence Length = 203093 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ggttcaccacactgaaatcatc 359 |||||||||||||||||||||| Sbjct: 165658 ggttcaccacactgaaatcatc 165679
>dbj|AK113987.1| Ciona intestinalis cDNA, clone:cicl020j05, full insert sequence Length = 2187 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 469 atgctgcatttgtagcttctgc 490 |||||||||||||||||||||| Sbjct: 739 atgctgcatttgtagcttctgc 718
>ref|XM_525855.1| PREDICTED: Pan troglodytes similar to FLJ00204 protein (LOC470474), mRNA Length = 4731 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 ccaagctgtcccaaaccagca 435 ||||||||||||||||||||| Sbjct: 2459 ccaagctgtcccaaaccagca 2439
>gb|AC136710.8| Mus musculus chromosome 19, clone RP23-35B13, complete sequence Length = 206056 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 463 tctgcaatgctgcatttgtag 483 ||||||||||||||||||||| Sbjct: 109774 tctgcaatgctgcatttgtag 109754
>gb|AE013082.1| Thermoanaerobacter tengcongensis MB4, section 109 of 244 of the complete genome Length = 14022 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 aacagcaagtgataatggtgc 107 ||||||||||||||||||||| Sbjct: 13692 aacagcaagtgataatggtgc 13672
>gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosome 19, complete sequence Length = 197365 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 tctgcaatgctgcatttgtag 483 ||||||||||||||||||||| Sbjct: 146723 tctgcaatgctgcatttgtag 146743
>gb|AC109344.4| Homo sapiens BAC clone RP13-891P8 from 2, complete sequence Length = 87097 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 ccaagctgtcccaaaccagca 435 ||||||||||||||||||||| Sbjct: 77543 ccaagctgtcccaaaccagca 77523
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cggtgatcctgttttcggtg 215 |||||||||||||||||||| Sbjct: 4037976 cggtgatcctgttttcggtg 4037995
>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence Length = 181038 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 gcttgcttccatctctctcc 196 |||||||||||||||||||| Sbjct: 28969 gcttgcttccatctctctcc 28988
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggcaaagagctgggaataga 250 |||||||||||||||||||| Sbjct: 879025 ggcaaagagctgggaataga 879006
>ref|XM_676530.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8353.2), mRNA Length = 429 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 gcttgcttccatctctctccggtg 200 |||||| ||||||||||||||||| Sbjct: 375 gcttgcctccatctctctccggtg 352
>gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, complete sequence Length = 250903 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cctttgcctctgtttacaga 274 |||||||||||||||||||| Sbjct: 26254 cctttgcctctgtttacaga 26235
>gb|AC159641.2| Mus musculus BAC clone RP23-465F1 from chromosome 12, complete sequence Length = 176949 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 aagagctgggaatagatatg 254 |||||||||||||||||||| Sbjct: 100223 aagagctgggaatagatatg 100242
>ref|XM_570859.1| Cryptococcus neoformans var. neoformans JEC21 NBP35 (CNE03090) partial mRNA Length = 1011 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggcaaagagctgggaataga 250 |||||||||||||||||||| Sbjct: 844 ggcaaagagctgggaataga 863
>gb|AC108420.8| Mus musculus chromosome 7, clone RP23-38E14, complete sequence Length = 134825 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cctttgcctctgtttacaga 274 |||||||||||||||||||| Sbjct: 8538 cctttgcctctgtttacaga 8557
>emb|Z84572.1|HS49J10 Human DNA sequence from clone RP1-49J10 on chromosome 13 Contains the 3' end of the gene for androgen-induced prostate proliferative shutoff associated protein (AS3) (CG008, FLJ23236, KIAA0979), complete sequence Length = 137246 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ctgggaatagatatgccttt 259 |||||||||||||||||||| Sbjct: 130547 ctgggaatagatatgccttt 130566
>emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chromosome 13 Contains the 3' end of the KIAA0979 gene and part of a novel gene, complete sequence Length = 168487 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ctgggaatagatatgccttt 259 |||||||||||||||||||| Sbjct: 130038 ctgggaatagatatgccttt 130057
>emb|AL023775.1|HS497J21 Human DNA sequence from clone RP3-497J21 on chromosome 6q26-27 Contains part of a variant of the RPS6KA2 gene for ribosomal protein S6 kinase, 90kD, polypeptide 2 (RSK3) and a IGF-II mRNA-binding protein 3 (KOC1) pseudogene, complete sequence Length = 129432 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 676 ggcagctcaatgaagctgaa 695 |||||||||||||||||||| Sbjct: 17597 ggcagctcaatgaagctgaa 17578
>emb|CR861477.1| Human DNA sequence from clone XX-NCIH2171_4G20, complete sequence Length = 121004 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tgcccagatgtctgcaatgctgca 476 |||||||||||||||||| ||||| Sbjct: 35587 tgcccagatgtctgcaatcctgca 35564
>emb|CR856000.1| Human DNA sequence from clone XX-NCIH2171_4H19, complete sequence Length = 121005 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tgcccagatgtctgcaatgctgca 476 |||||||||||||||||| ||||| Sbjct: 35587 tgcccagatgtctgcaatcctgca 35564
>emb|CR812473.1| Human DNA sequence from clone XX-NCIH2171_18L10, complete sequence Length = 128736 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tgcccagatgtctgcaatgctgca 476 |||||||||||||||||| ||||| Sbjct: 39458 tgcccagatgtctgcaatcctgca 39435
>gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, complete sequence Length = 205925 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cctttgcctctgtttacaga 274 |||||||||||||||||||| Sbjct: 10838 cctttgcctctgtttacaga 10857
>emb|CR626938.1| Human DNA sequence from clone XX-NCIH2171_5AA20, complete sequence Length = 111651 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 tgcccagatgtctgcaatgctgca 476 |||||||||||||||||| ||||| Sbjct: 64187 tgcccagatgtctgcaatcctgca 64210
>gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, complete sequence Length = 157672 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tgcccagatgtctgcaatgctgca 476 |||||||||||||||||| ||||| Sbjct: 34258 tgcccagatgtctgcaatcctgca 34235
>ref|XM_397003.2| PREDICTED: Apis mellifera similar to ENSANGP00000005626 (LOC413562), mRNA Length = 5088 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gtggacctatgcaacagcaa 94 |||||||||||||||||||| Sbjct: 328 gtggacctatgcaacagcaa 309
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 aggcgaggaacttgatggag 591 |||||||||||||||||||| Sbjct: 4632725 aggcgaggaacttgatggag 4632744
>gb|AF019664.1|AF019664 Homo sapiens cosmids 52b3, 189g5, ICRFc109N244QD2, P1 255h6, and PAC pDJ84g15 from chromosome 6q27 encompassing markers D6S193 and D6S297, complete sequence Length = 68940 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 676 ggcagctcaatgaagctgaa 695 |||||||||||||||||||| Sbjct: 2155 ggcagctcaatgaagctgaa 2174
>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence Length = 166392 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 gcttgcttccatctctctcc 196 |||||||||||||||||||| Sbjct: 99675 gcttgcttccatctctctcc 99694 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,478,817 Number of Sequences: 3902068 Number of extensions: 5478817 Number of successful extensions: 93736 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93639 Number of HSP's gapped (non-prelim): 97 length of query: 711 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 688 effective length of database: 17,143,297,704 effective search space: 11794588820352 effective search space used: 11794588820352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)