ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14b12 |
|---|---|
| Clone Library Name | barley_pub |
>PTPM1_DROME (Q86BN8) Protein-tyrosine phosphatase mitochondrial 1-like protein,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) (PTEN-like protein) Length = 200 Score = 45.1 bits (105), Expect = 2e-04 Identities = 19/44 (43%), Positives = 27/44 (61%) Frame = -3 Query: 740 CYLVQYKQMTPAGAFEHVRSCRPRVLLASAQWKAVQEFYQLRVK 609 CYL+ TP A +H+R CRP +LL + QW A++ FY V+ Sbjct: 154 CYLMMKNGWTPDQAVDHMRKCRPHILLHTKQWDALRLFYTNNVE 197
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 32.0 bits (71), Expect = 2.1 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 13/93 (13%) Frame = +2 Query: 200 HRGSPKFTD*PRHLEVDS----GDRSQAAPPQESSSHYPRSRQVPPCPSGRGT------- 346 HR +P+ + PRH + D D S A +S H P P C R Sbjct: 1067 HRDAPRASSPPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLPAPVCIGYRDAPRASSPP 1126 Query: 347 --ATTGMKTLQMLPGWQTEHGILSLFPTNHCPH 439 A Q LP TE + S+ + CPH Sbjct: 1127 RQAPEPSLLFQDLPRASTESLVPSMDSLHECPH 1159
>GAL7_STRLI (P13212) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)| (Gal-1-P uridylyltransferase) (UDP-glucose--hexose-1-phosphate uridylyltransferase) Length = 354 Score = 31.6 bits (70), Expect = 2.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 254 GDRSQAAPPQESSSHYPRSRQVPPCPSGRGTA 349 GD + + + +++P + Q P CPSGRGTA Sbjct: 49 GDSAPSRLAPQGRTYHPPADQCPLCPSGRGTA 80
>DUS23_MOUSE (Q6NT99) Dual specificity protein phosphatase 23 (EC 3.1.3.48) (EC| 3.1.3.16) (Low molecular mass dual specificity phosphatase 3) (LDP-3) Length = 150 Score = 31.2 bits (69), Expect = 3.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 740 CYLVQYKQMTPAGAFEHVRSCRPRVLLASAQWKAVQEFYQ 621 CYLV+ + + A +R RP + Q KAV +FYQ Sbjct: 108 CYLVKERALAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQ 147
>APBA2_MOUSE (P98084) Amyloid beta A4 precursor protein-binding family A member| 2 (Neuron-specific X11L protein) (Neuronal Munc18-1-interacting protein 2) (Mint-2) (Adapter protein X11beta) Length = 750 Score = 30.8 bits (68), Expect = 4.6 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Frame = +2 Query: 230 PRHL-EVDSGDRSQAAPPQES------SSHYPRSRQVPPCPSGRGTATTGMKTLQMLP 382 P H+ E+D GD ++A PP ++ P+S +PP G G+KT P Sbjct: 251 PEHMPELDPGDSTEACPPSDTGHGPGRQEARPKSLNLPPEVKHPGDLQRGLKTKTRTP 308
>DUS23_HUMAN (Q9BVJ7) Dual specificity protein phosphatase 23 (EC 3.1.3.48) (EC| 3.1.3.16) (Low molecular mass dual specificity phosphatase 3) (LDP-3) (VH1-like phosphatase Z) Length = 150 Score = 30.8 bits (68), Expect = 4.6 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 740 CYLVQYKQMTPAGAFEHVRSCRPRVLLASAQWKAVQEFYQ 621 CYLV+ + + A +R RP + Q KAV +FYQ Sbjct: 108 CYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQ 147
>RNA14_YEAST (P25298) mRNA 3'-end processing protein RNA14| Length = 677 Score = 30.8 bits (68), Expect = 4.6 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +1 Query: 403 YTKLISHKPLPTLTAKPSALYPSRSDSETITNVF 504 YT L+++ P+LT K S Y +DSE+++N F Sbjct: 339 YTALLANPDSPSLTFKLSECYELDNDSESVSNCF 372
>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)| Length = 1201 Score = 30.4 bits (67), Expect = 6.0 Identities = 25/86 (29%), Positives = 32/86 (37%) Frame = +2 Query: 251 SGDRSQAAPPQESSSHYPRSRQVPPCPSGRGTATTGMKTLQMLPGWQTEHGILSLFPTNH 430 +G S +PP+E+ SH P S T + MK H S T Sbjct: 969 TGALSTGSPPRENPSH--------PTASALSTGSPPMKN--------PSHPTASALSTGS 1012 Query: 431 CPH*LPSHPHYTLQGLTQRPSRMSSH 508 P PSHP + + PSR SH Sbjct: 1013 PPMKNPSHPTASTLSMGLPPSRTPSH 1038
>Y1145_VIBPA (Q87QK4) UPF0225 protein VP1145| Length = 167 Score = 30.0 bits (66), Expect = 7.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -3 Query: 344 CRAQKDKEALAESVGSESCSLEAEQPANGHH 252 C A++ +E +A+S+ S+ C LE + G H Sbjct: 57 CNAEEQREGIAQSIDSDWCKLEVVKAEAGSH 87
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 30.0 bits (66), Expect = 7.9 Identities = 24/69 (34%), Positives = 29/69 (42%) Frame = +2 Query: 230 PRHLEVDSGDRSQAAPPQESSSHYPRSRQVPPCPSGRGTATTGMKTLQMLPGWQTEHGIL 409 PRHL R Q+ P S P S PS T ++ +Q LPG T G+ Sbjct: 821 PRHLR-----RLQSLAPSAPSPASPASS-----PSQPDTPSSASLHVQPLPGCSTPAGLG 870 Query: 410 SLFPTNHCP 436 SL PT P Sbjct: 871 SLLPTAGSP 879
>BCD_DROME (P09081) Homeotic protein bicoid (PRD-4)| Length = 494 Score = 30.0 bits (66), Expect = 7.9 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +2 Query: 611 SL*AGRIPGQLSIVPTPITPLACMTEH 691 SL G P L+ PTP TP A MTEH Sbjct: 187 SLGGGATPNALTPSPTPSTPTAHMTEH 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,605,921 Number of Sequences: 219361 Number of extensions: 2418889 Number of successful extensions: 6520 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6225 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6515 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7762912789 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
