ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14b12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197752.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0089A17.7), mRNA Length = 1485 Score = 161 bits (81), Expect = 4e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 1122 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 1063 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct: 1062 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 1003 Query: 471 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 530 ||||| || | || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct: 1002 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 943 Query: 531 agcaaggaa 539 |||||||| Sbjct: 942 ggcaaggaa 934 Score = 113 bits (57), Expect = 8e-22 Identities = 117/137 (85%) Strand = Plus / Minus Query: 606 tttcttcactctaagctggtagaattcctggacagctttccattgtgccgacgccaataa 665 ||||||||| |||||||||||||||| || ||||| | || ||||| || || |||| Sbjct: 885 tttcttcaccctaagctggtagaattgctcaacagcctgccgctgtgcagaagctaatag 826 Query: 666 cacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgtttgta 725 |||||||||||||| | |||||||||||| ||||| |||| || |||||||||||||| Sbjct: 825 cacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgtttgta 766 Query: 726 ttgcaccaagtagcaaa 742 ||||||||||||||||| Sbjct: 765 ttgcaccaagtagcaaa 749 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/112 (83%), Gaps = 6/112 (5%) Strand = Plus / Minus Query: 50 catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 109 ||||||||| |||||| |||| |||||||||||||||| |||| |||| |||| |||| Sbjct: 1466 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 1410 Query: 110 actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 158 |||| |||| ||| ||||| | |||||||||| ||| ||||||||||||| Sbjct: 1409 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 1358 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 1220 tgctctgcctcaagggagcagctctcgctccccacgct 1183
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 161 bits (81), Expect = 4e-36 Identities = 162/189 (85%) Strand = Plus / Plus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 73872 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 73931 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct: 73932 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 73991 Query: 471 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 530 ||||| || | || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct: 73992 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 74051 Query: 531 agcaaggaa 539 |||||||| Sbjct: 74052 ggcaaggaa 74060 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 661 aataacacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgt 720 |||| |||||||||||||| | |||||||||||| ||||| |||| || ||||||||| Sbjct: 74654 aatagcacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgt 74713 Query: 721 ttgtattgcacc 732 |||||||||||| Sbjct: 74714 ttgtattgcacc 74725 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/112 (83%), Gaps = 6/112 (5%) Strand = Plus / Plus Query: 50 catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 109 ||||||||| |||||| |||| |||||||||||||||| |||| |||| |||| |||| Sbjct: 73528 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 73584 Query: 110 actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 158 |||| |||| ||| ||||| | |||||||||| ||| ||||||||||||| Sbjct: 73585 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 73636 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Plus Query: 606 tttcttcactctaagctggtagaatt 631 ||||||||| |||||||||||||||| Sbjct: 74109 tttcttcaccctaagctggtagaatt 74134 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Plus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 73774 tgctctgcctcaagggagcagctctcgctccccacgct 73811
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 161 bits (81), Expect = 4e-36 Identities = 162/189 (85%) Strand = Plus / Plus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 21641968 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 21642027 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct: 21642028 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 21642087 Query: 471 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 530 ||||| || | || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct: 21642088 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 21642147 Query: 531 agcaaggaa 539 |||||||| Sbjct: 21642148 ggcaaggaa 21642156 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 661 aataacacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgt 720 |||| |||||||||||||| | |||||||||||| ||||| |||| || ||||||||| Sbjct: 21642750 aatagcacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgt 21642809 Query: 721 ttgtattgcacc 732 |||||||||||| Sbjct: 21642810 ttgtattgcacc 21642821 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/112 (83%), Gaps = 6/112 (5%) Strand = Plus / Plus Query: 50 catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 109 ||||||||| |||||| |||| |||||||||||||||| |||| |||| |||| |||| Sbjct: 21641624 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 21641680 Query: 110 actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 158 |||| |||| ||| ||||| | |||||||||| ||| ||||||||||||| Sbjct: 21641681 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 21641732 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Plus Query: 606 tttcttcactctaagctggtagaatt 631 ||||||||| |||||||||||||||| Sbjct: 21642205 tttcttcaccctaagctggtagaatt 21642230 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Plus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 21641870 tgctctgcctcaagggagcagctctcgctccccacgct 21641907
>dbj|AK103006.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116I08, full insert sequence Length = 1420 Score = 161 bits (81), Expect = 4e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 1181 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 1122 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct: 1121 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 1062 Query: 471 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 530 ||||| || | || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct: 1061 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 1002 Query: 531 agcaaggaa 539 |||||||| Sbjct: 1001 ggcaaggaa 993 Score = 113 bits (57), Expect = 8e-22 Identities = 117/137 (85%) Strand = Plus / Minus Query: 606 tttcttcactctaagctggtagaattcctggacagctttccattgtgccgacgccaataa 665 ||||||||| |||||||||||||||| || ||||| | || ||||| || || |||| Sbjct: 944 tttcttcaccctaagctggtagaattgctcaacagcctgccgctgtgcagaagctaatag 885 Query: 666 cacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgtttgta 725 |||||||||||||| | |||||||||||| ||||| |||| || |||||||||||||| Sbjct: 884 cacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgtttgta 825 Query: 726 ttgcaccaagtagcaaa 742 ||||||||||||||||| Sbjct: 824 ttgcaccaagtagcaaa 808 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 1279 tgctctgcctcaagggagcagctctcgctccccacgct 1242
>dbj|AK071105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077B12, full insert sequence Length = 1212 Score = 161 bits (81), Expect = 4e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 856 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 797 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct: 796 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 737 Query: 471 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 530 ||||| || | || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct: 736 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 677 Query: 531 agcaaggaa 539 |||||||| Sbjct: 676 ggcaaggaa 668 Score = 113 bits (57), Expect = 8e-22 Identities = 117/137 (85%) Strand = Plus / Minus Query: 606 tttcttcactctaagctggtagaattcctggacagctttccattgtgccgacgccaataa 665 ||||||||| |||||||||||||||| || ||||| | || ||||| || || |||| Sbjct: 619 tttcttcaccctaagctggtagaattgctcaacagcctgccgctgtgcagaagctaatag 560 Query: 666 cacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgtttgta 725 |||||||||||||| | |||||||||||| ||||| |||| || |||||||||||||| Sbjct: 559 cacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgtttgta 500 Query: 726 ttgcaccaagtagcaaa 742 ||||||||||||||||| Sbjct: 499 ttgcaccaagtagcaaa 483 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/112 (83%), Gaps = 6/112 (5%) Strand = Plus / Minus Query: 50 catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 109 ||||||||| |||||| |||| |||||||||||||||| |||| |||| |||| |||| Sbjct: 1200 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 1144 Query: 110 actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 158 |||| |||| ||| ||||| | |||||||||| ||| ||||||||||||| Sbjct: 1143 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 1092 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 954 tgctctgcctcaagggagcagctctcgctccccacgct 917
>dbj|AK060104.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B05, full insert sequence Length = 1034 Score = 161 bits (81), Expect = 4e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 670 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 611 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct: 610 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 551 Query: 471 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 530 ||||| || | || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct: 550 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 491 Query: 531 agcaaggaa 539 |||||||| Sbjct: 490 ggcaaggaa 482 Score = 113 bits (57), Expect = 8e-22 Identities = 117/137 (85%) Strand = Plus / Minus Query: 606 tttcttcactctaagctggtagaattcctggacagctttccattgtgccgacgccaataa 665 ||||||||| |||||||||||||||| || ||||| | || ||||| || || |||| Sbjct: 433 tttcttcaccctaagctggtagaattgctcaacagcctgccgctgtgcagaagctaatag 374 Query: 666 cacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgtttgta 725 |||||||||||||| | |||||||||||| ||||| |||| || |||||||||||||| Sbjct: 373 cacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgtttgta 314 Query: 726 ttgcaccaagtagcaaa 742 ||||||||||||||||| Sbjct: 313 ttgcaccaagtagcaaa 297 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/112 (83%), Gaps = 6/112 (5%) Strand = Plus / Minus Query: 50 catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 109 ||||||||| |||||| |||| |||||||||||||||| |||| |||| |||| |||| Sbjct: 1014 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 958 Query: 110 actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 158 |||| |||| ||| ||||| | |||||||||| ||| ||||||||||||| Sbjct: 957 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 906 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 768 tgctctgcctcaagggagcagctctcgctccccacgct 731
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 161 bits (81), Expect = 4e-36 Identities = 162/189 (85%) Strand = Plus / Plus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 21653631 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 21653690 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| ||||||||||| ||||| |||||| |||||||| ||||||||| Sbjct: 21653691 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 21653750 Query: 471 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 530 ||||| || | || ||||| |||||||||||||| ||||| | |||||||| ||||| Sbjct: 21653751 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 21653810 Query: 531 agcaaggaa 539 |||||||| Sbjct: 21653811 ggcaaggaa 21653819 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 661 aataacacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgt 720 |||| |||||||||||||| | |||||||||||| ||||| |||| || ||||||||| Sbjct: 21654413 aatagcacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgt 21654472 Query: 721 ttgtattgcacc 732 |||||||||||| Sbjct: 21654473 ttgtattgcacc 21654484 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/112 (83%), Gaps = 6/112 (5%) Strand = Plus / Plus Query: 50 catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 109 ||||||||| |||||| |||| |||||||||||||||| |||| |||| |||| |||| Sbjct: 21653287 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 21653343 Query: 110 actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 158 |||| |||| ||| ||||| | |||||||||| ||| ||||||||||||| Sbjct: 21653344 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 21653395 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Plus Query: 606 tttcttcactctaagctggtagaatt 631 ||||||||| |||||||||||||||| Sbjct: 21653868 tttcttcaccctaagctggtagaatt 21653893 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Plus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 21653533 tgctctgcctcaagggagcagctctcgctccccacgct 21653570
>dbj|AK101939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074H15, full insert sequence Length = 1631 Score = 155 bits (78), Expect = 2e-34 Identities = 163/190 (85%), Gaps = 1/190 (0%) Strand = Plus / Minus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 1254 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 1195 Query: 411 gcttatttcccacaaa-ccactgcccacattaactgccaagccatccgcattataccctt 469 |||||| ||||||||| ||||||||||| ||||| |||||| |||||||| |||||||| Sbjct: 1194 gcttatctcccacaaagccactgcccacgttaacggccaaggtatccgcatcataccctt 1135 Query: 470 caaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgag 529 | ||||| || | || ||||| |||||||||||||| ||||| | |||||||| |||| Sbjct: 1134 cgaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgag 1075 Query: 530 tagcaaggaa 539 | |||||||| Sbjct: 1074 tggcaaggaa 1065 Score = 113 bits (57), Expect = 8e-22 Identities = 117/137 (85%) Strand = Plus / Minus Query: 606 tttcttcactctaagctggtagaattcctggacagctttccattgtgccgacgccaataa 665 ||||||||| |||||||||||||||| || ||||| | || ||||| || || |||| Sbjct: 1016 tttcttcaccctaagctggtagaattgctcaacagcctgccgctgtgcagaagctaatag 957 Query: 666 cacccttggcctgcatgaccgaacatgttcaaaagctccagcaggcgtcatttgtttgta 725 |||||||||||||| | |||||||||||| ||||| |||| || |||||||||||||| Sbjct: 956 cacccttggcctgcgcaagcgaacatgttcataagcttcagccggagtcatttgtttgta 897 Query: 726 ttgcaccaagtagcaaa 742 ||||||||||||||||| Sbjct: 896 ttgcaccaagtagcaaa 880 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/112 (83%), Gaps = 6/112 (5%) Strand = Plus / Minus Query: 50 catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 109 ||||||||| |||||| |||| |||||||||||||||| |||| |||| |||| |||| Sbjct: 1598 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 1542 Query: 110 actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 158 |||| |||| ||| ||||| | |||||||||| ||| ||||||||||||| Sbjct: 1541 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 1490 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 271 tgctccgcctcaagagagcagctctcactacccacgct 308 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 1352 tgctctgcctcaagggagcagctctcgctccccacgct 1315
>gb|AY107859.1| Zea mays PCO076568 mRNA sequence Length = 1538 Score = 121 bits (61), Expect = 3e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 351 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 410 |||||| || |||||||| |||||||||| || ||| |||||||| |||||||||| || Sbjct: 1188 ccacagatacgaaaacccagcaaatgctgtcttgctcgcaaactggacacggtatatcaa 1129 Query: 411 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 470 |||||| |||||||| | |||||||| ||||| ||||| |||| |||||||||||||| Sbjct: 1128 gcttatctcccacaatctactgcccatattaagtgccagtgcatctgcattatacccttc 1069 Query: 471 aaggtctgactcagagaccatcacgaatg 499 |||||||| || ||||||||||| |||| Sbjct: 1068 gaggtctgattctgagaccatcacaaatg 1040 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 61 gtacacgtagcagtcaacttattacagcacatatatacagacccgagcaactgaactcct 120 |||||||||||||||||||||||||| |||||||||| |||||||||||| |||| | Sbjct: 1457 gtacacgtagcagtcaacttattacatgtcatatatacaaacccgagcaacttcactctt 1398 Query: 121 tggttgctgcagac 134 |||||||||||||| Sbjct: 1397 tggttgctgcagac 1384 Score = 54.0 bits (27), Expect = 7e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 688 acatgttcaaaagctccagcaggcgtcatttgtttgtattgcaccaagtagcaaa 742 ||||||||| ||||| ||||||| ||||| | ||| ||||||||||| ||||||| Sbjct: 869 acatgttcataagcttcagcaggagtcatatttttatattgcaccaaatagcaaa 815 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Minus Query: 223 ggattaaccacgacaccttgaagtagaca 251 |||||||||||||||||||| |||||||| Sbjct: 1310 ggattaaccacgacaccttgcagtagaca 1282
>gb|DQ167204.1| Zea mays dual-specificity protein-like phosphatase 1 mRNA, complete cds Length = 678 Score = 54.0 bits (27), Expect = 7e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 688 acatgttcaaaagctccagcaggcgtcatttgtttgtattgcaccaagtagcaaa 742 ||||||||| ||||| ||||||| ||||| | ||| ||||||||||| ||||||| Sbjct: 599 acatgttcataagcttcagcaggagtcatatttttatattgcaccaaatagcaaa 545
>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete sequence Length = 278310 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 ggtatgaaaaccctgcaaatg 376 ||||||||||||||||||||| Sbjct: 123931 ggtatgaaaaccctgcaaatg 123911
>gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204425 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 gtgcctccttgtccttctggg 337 ||||||||||||||||||||| Sbjct: 32408 gtgcctccttgtccttctggg 32388
>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete sequence Length = 176845 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 ggtatgaaaaccctgcaaatg 376 ||||||||||||||||||||| Sbjct: 112792 ggtatgaaaaccctgcaaatg 112772 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,544,450 Number of Sequences: 3902068 Number of extensions: 6544450 Number of successful extensions: 172088 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 171979 Number of HSP's gapped (non-prelim): 108 length of query: 742 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 719 effective length of database: 17,143,297,704 effective search space: 12326031049176 effective search space used: 12326031049176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
