ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13m10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK058483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
2emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4,... 46 0.13
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
5dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
6dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
7dbj|AK069129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
8gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 44 0.49
9gb|AC109205.12| Mus musculus chromosome 7, clone RP23-137A4, com... 40 7.7
10ref|XM_360597.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 7.7
11emb|AL356423.15| Human DNA sequence from clone RP11-295B17 on ch... 40 7.7
12emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chr... 40 7.7

>dbj|AK058483.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D06, full
           insert sequence
          Length = 600

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Minus

                                                                       
Query: 246 ttccttttgatcgagctggccactatatagcatcttctgtaggtggtcatcaacgaggtt 305
           |||||||||||| ||||||||||| ||||  | ||| || |  || ||||| |  | |||
Sbjct: 238 ttccttttgatcaagctggccactgtatattagcttttgcaattgatcatctatcaagtt 179

                                                                       
Query: 306 aacatgctgcttaccaatgtccaaagagcatcccgagataggtaggccagtcagataggc 365
           |||||||| ||| ||||||||||| ||  |||||   || ||||| ||| ||| ||||||
Sbjct: 178 aacatgctcctttccaatgtccaaggaatatcccagaattggtagtccaatcaaataggc 119

                                        
Query: 366 aaccagaaaatgagcagcttcatgcctag 394
           ||||| |||||||||||||||||||||||
Sbjct: 118 aaccaaaaaatgagcagcttcatgcctag 90



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>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
             complete sequence
          Length = 153643

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 372   aaaatgagcagcttcatgcctag 394
             |||||||||||||||||||||||
Sbjct: 36682 aaaatgagcagcttcatgcctag 36704



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 246   ttccttttgatcgagctggccactatata 274
             |||||||||||| ||||||||||| ||||
Sbjct: 36483 ttccttttgatcaagctggccactgtata 36511



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 372      aaaatgagcagcttcatgcctag 394
                |||||||||||||||||||||||
Sbjct: 32517948 aaaatgagcagcttcatgcctag 32517970



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 246      ttccttttgatcgagctggccactatata 274
                |||||||||||| ||||||||||| ||||
Sbjct: 32517749 ttccttttgatcaagctggccactgtata 32517777



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 372      aaaatgagcagcttcatgcctag 394
                |||||||||||||||||||||||
Sbjct: 16006510 aaaatgagcagcttcatgcctag 16006488



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>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1328_D07
          Length = 155007

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 372  aaaatgagcagcttcatgcctag 394
            |||||||||||||||||||||||
Sbjct: 6723 aaaatgagcagcttcatgcctag 6701



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>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1238_G07
          Length = 78304

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 372   aaaatgagcagcttcatgcctag 394
             |||||||||||||||||||||||
Sbjct: 77223 aaaatgagcagcttcatgcctag 77201



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>dbj|AK069129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007E02, full
           insert sequence
          Length = 1268

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 372 aaaatgagcagcttcatgcctag 394
           |||||||||||||||||||||||
Sbjct: 938 aaaatgagcagcttcatgcctag 916



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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 265    ccactatatagcatcttctgta 286
              ||||||||||||||||||||||
Sbjct: 639627 ccactatatagcatcttctgta 639648



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>gb|AC109205.12| Mus musculus chromosome 7, clone RP23-137A4, complete sequence
          Length = 225302

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   ttctgtaggtggtcatcaac 299
             ||||||||||||||||||||
Sbjct: 82896 ttctgtaggtggtcatcaac 82877



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>ref|XM_360597.1| Magnaporthe grisea 70-15 hypothetical protein (MG03140.4) partial
           mRNA
          Length = 3066

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 118 ggagatcacagccaacctgg 137
           ||||||||||||||||||||
Sbjct: 505 ggagatcacagccaacctgg 486



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>emb|AL356423.15| Human DNA sequence from clone RP11-295B17 on chromosome 13 Contains the
             5' end of the STK24 gene for serine/threonine kinase 24, a
             novel gene, a novel pseudogene, a cytochrome c pseudogene,
             a calmodulin 2 (CALM2) pseudogene and a CpG island,
             complete sequence
          Length = 174041

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   gcaaccagaaaatgagcagc 383
             ||||||||||||||||||||
Sbjct: 14075 gcaaccagaaaatgagcagc 14094



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>emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chromosome 10 Contains CXCL12
              gene for chemokine (C-X-C motif) ligand 12 (stromal
              cell-derived factor 1), two putative transcripts and two
              putative CpG islands, complete sequence
          Length = 184474

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     gacctgaagagtgaagagga 59
              ||||||||||||||||||||
Sbjct: 144321 gacctgaagagtgaagagga 144340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,398,734
Number of Sequences: 3902068
Number of extensions: 4398734
Number of successful extensions: 76009
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75936
Number of HSP's gapped (non-prelim): 72
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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