Clone Name | rbasd13m10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK058483.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D06, full insert sequence Length = 600 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 246 ttccttttgatcgagctggccactatatagcatcttctgtaggtggtcatcaacgaggtt 305 |||||||||||| ||||||||||| |||| | ||| || | || ||||| | | ||| Sbjct: 238 ttccttttgatcaagctggccactgtatattagcttttgcaattgatcatctatcaagtt 179 Query: 306 aacatgctgcttaccaatgtccaaagagcatcccgagataggtaggccagtcagataggc 365 |||||||| ||| ||||||||||| || ||||| || ||||| ||| ||| |||||| Sbjct: 178 aacatgctcctttccaatgtccaaggaatatcccagaattggtagtccaatcaaataggc 119 Query: 366 aaccagaaaatgagcagcttcatgcctag 394 ||||| ||||||||||||||||||||||| Sbjct: 118 aaccaaaaaatgagcagcttcatgcctag 90
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 aaaatgagcagcttcatgcctag 394 ||||||||||||||||||||||| Sbjct: 36682 aaaatgagcagcttcatgcctag 36704 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 ttccttttgatcgagctggccactatata 274 |||||||||||| ||||||||||| |||| Sbjct: 36483 ttccttttgatcaagctggccactgtata 36511
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 aaaatgagcagcttcatgcctag 394 ||||||||||||||||||||||| Sbjct: 32517948 aaaatgagcagcttcatgcctag 32517970 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 ttccttttgatcgagctggccactatata 274 |||||||||||| ||||||||||| |||| Sbjct: 32517749 ttccttttgatcaagctggccactgtata 32517777
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 aaaatgagcagcttcatgcctag 394 ||||||||||||||||||||||| Sbjct: 16006510 aaaatgagcagcttcatgcctag 16006488
>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1328_D07 Length = 155007 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 aaaatgagcagcttcatgcctag 394 ||||||||||||||||||||||| Sbjct: 6723 aaaatgagcagcttcatgcctag 6701
>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1238_G07 Length = 78304 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 aaaatgagcagcttcatgcctag 394 ||||||||||||||||||||||| Sbjct: 77223 aaaatgagcagcttcatgcctag 77201
>dbj|AK069129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007E02, full insert sequence Length = 1268 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 372 aaaatgagcagcttcatgcctag 394 ||||||||||||||||||||||| Sbjct: 938 aaaatgagcagcttcatgcctag 916
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 265 ccactatatagcatcttctgta 286 |||||||||||||||||||||| Sbjct: 639627 ccactatatagcatcttctgta 639648
>gb|AC109205.12| Mus musculus chromosome 7, clone RP23-137A4, complete sequence Length = 225302 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ttctgtaggtggtcatcaac 299 |||||||||||||||||||| Sbjct: 82896 ttctgtaggtggtcatcaac 82877
>ref|XM_360597.1| Magnaporthe grisea 70-15 hypothetical protein (MG03140.4) partial mRNA Length = 3066 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ggagatcacagccaacctgg 137 |||||||||||||||||||| Sbjct: 505 ggagatcacagccaacctgg 486
>emb|AL356423.15| Human DNA sequence from clone RP11-295B17 on chromosome 13 Contains the 5' end of the STK24 gene for serine/threonine kinase 24, a novel gene, a novel pseudogene, a cytochrome c pseudogene, a calmodulin 2 (CALM2) pseudogene and a CpG island, complete sequence Length = 174041 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gcaaccagaaaatgagcagc 383 |||||||||||||||||||| Sbjct: 14075 gcaaccagaaaatgagcagc 14094
>emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chromosome 10 Contains CXCL12 gene for chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1), two putative transcripts and two putative CpG islands, complete sequence Length = 184474 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gacctgaagagtgaagagga 59 |||||||||||||||||||| Sbjct: 144321 gacctgaagagtgaagagga 144340 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,398,734 Number of Sequences: 3902068 Number of extensions: 4398734 Number of successful extensions: 76009 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75936 Number of HSP's gapped (non-prelim): 72 length of query: 569 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 546 effective length of database: 17,143,297,704 effective search space: 9360240546384 effective search space used: 9360240546384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)