ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHK_MYCPA (Q73ZM8) Probable phosphoketolase (EC 4.1.2.-) 30 2.0
2THT1_SCHPO (Q09684) Nuclear fusion protein tht1 29 2.7
3ENGC1_BACTN (Q8A5I9) Probable GTPase engC protein 1 (EC 3.6.1.-) 29 2.7
4NELL2_MOUSE (Q61220) Protein kinase C-binding protein NELL2 prec... 28 7.7
5COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-a... 28 7.7
6COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-a... 28 7.7

>PHK_MYCPA (Q73ZM8) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 804

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 272 AHIMYCT-GLGLGTWDATAEAAQMRTRVVVACYTSVP 165
           A I +CT GLG+  W +TA +      VV+AC   +P
Sbjct: 602 AAIAHCTRGLGIWDWASTARSIGAEPDVVLACAGDIP 638



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>THT1_SCHPO (Q09684) Nuclear fusion protein tht1|
          Length = 577

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 117 RGSVCICFPSIENHTYWYTSIASHYYSRTHLSCLS 221
           RGS   C   +E+ + W+ S  SH++   HL  L+
Sbjct: 114 RGSQSECVSKLESTSTWWLSFTSHFHDVNHLCRLA 148



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>ENGC1_BACTN (Q8A5I9) Probable GTPase engC protein 1 (EC 3.6.1.-)|
          Length = 310

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 170 VPVRMIFDGREAYANAPPSSIDHALDTYTHVCVPRNYIVGFKISSK 33
           VPV+++F+  +AY       +D  ++ YTH+  P      FK+S+K
Sbjct: 119 VPVKLVFNKVDAYNEDELRYLDALINLYTHIGYP-----CFKVSAK 159



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>NELL2_MOUSE (Q61220) Protein kinase C-binding protein NELL2 precursor (NEL-like|
           protein 2) (MEL91 protein)
          Length = 816

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 280 VRMRTLCIVQGLG--WELGMRPLRQLRCVRE 194
           V +RT C++ GLG  W LG+ P  Q+  + E
Sbjct: 5   VLLRTFCVILGLGAVWGLGVDPSLQIDVLTE 35



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>COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = -3

Query: 230 DATAEAAQMRTRVVVACYTSVPVRMIFDGREAYANAPPSSIDHALDTYTHVCVPRNYIVG 51
           D    AAQ++  + +  Y    +RM++ G   + +AP   ID   +   HV  PR +++ 
Sbjct: 454 DVNLPAAQLQIAMGIPLYRIKDIRMMY-GVSPWGDAP---ID--FENSAHVPCPRGHVIA 507

Query: 50  FKISSK 33
            +I+S+
Sbjct: 508 ARITSE 513



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>COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = -3

Query: 230 DATAEAAQMRTRVVVACYTSVPVRMIFDGREAYANAPPSSIDHALDTYTHVCVPRNYIVG 51
           D    AAQ++  + +  Y    +RM++ G   + +AP   ID   +   HV  PR +++ 
Sbjct: 454 DVNLPAAQLQIAMGIPLYRIKDIRMMY-GVSPWGDAP---ID--FENSAHVPCPRGHVIA 507

Query: 50  FKISSK 33
            +I+S+
Sbjct: 508 ARITSE 513


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,894,949
Number of Sequences: 219361
Number of extensions: 801140
Number of successful extensions: 1832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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