Clone Information

BLAST Search Result

Clone Name	rbasd14b08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TAR1_KLULA (Q6CQE5) Protein TAR1	66	7e-11
2	TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to riboso...	60	4e-09
3	PKHA4_RAT (P60669) Pleckstrin homology domain-containing family ...	35	0.22
4	ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related home...	34	0.28
5	ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related home...	34	0.28
6	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	34	0.37
7	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	34	0.37
8	COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morpholog...	34	0.37
9	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	33	0.63
10	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	33	0.82
11	COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-...	33	0.82
12	Y1441_METJA (Q58836) Hypothetical protein MJ1441	33	0.82
13	CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al...	32	1.1
14	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	32	1.1
15	CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ...	32	1.4
16	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	32	1.4
17	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	32	1.4
18	CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)	32	1.4
19	CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (End...	32	1.8
20	COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide...	32	1.8
21	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	32	1.8
22	LGT_MYCPA (P60972) Prolipoprotein diacylglyceryl transferase (EC...	31	2.4
23	EMID2_HUMAN (Q96A83) Collagen alpha-1(XXVI) chain precursor (EMI...	31	2.4
24	CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor	31	2.4
25	IF2_DESDG (Q30WJ0) Translation initiation factor IF-2	31	3.1
26	CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)	31	3.1
27	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	31	3.1
28	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	31	3.1
29	CNO_HUMAN (Q9NUP1) Cappuccino protein homolog	31	3.1
30	C1QB_MOUSE (P14106) Complement C1q subcomponent subunit B precursor	31	3.1
31	ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)	31	3.1
32	DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing pr...	31	3.1
33	LGT2_STRCO (Q9FBW3) Prolipoprotein diacylglyceryl transferase 2 ...	31	3.1
34	Y1102_AERPE (Q9YD10) UPF0129 protein APE1102	30	4.1
35	CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (End...	30	4.1
36	ARX_BRARE (O42115) Aristaless-related homeobox protein (ARX)	30	4.1
37	DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)	30	4.1
38	PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-spe...	30	4.1
39	HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein...	30	4.1
40	SCND1_HUMAN (P57086) SCAN domain-containing protein 1	30	5.3
41	RL15_STAEQ (Q5HM18) 50S ribosomal protein L15	30	5.3
42	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	30	5.3
43	CELR2_HUMAN (Q9HCU4) Cadherin EGF LAG seven-pass G-type receptor...	30	5.3
44	ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc fi...	30	5.3
45	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	30	5.3
46	B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band...	30	5.3
47	NU4M_XENLA (P03912) NADH-ubiquinone oxidoreductase chain 4 (EC 1...	30	5.3
48	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	30	5.3
49	BTBDA_PONPY (Q5R585) BTB/POZ domain-containing protein 10	30	5.3
50	BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10	30	5.3
51	BTBDA_HUMAN (Q9BSF8) BTB/POZ domain-containing protein 10	30	5.3
52	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	30	6.9
53	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	30	6.9
54	YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III	30	6.9
55	PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regu...	30	6.9
56	MYO10_BOVIN (P79114) Myosin-10 (Myosin X)	30	6.9
57	CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor	30	6.9
58	COL2_CAEEL (P17656) Cuticle collagen 2 precursor	30	6.9
59	COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Conta...	30	6.9
60	PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9	30	6.9
61	LGT_STRAW (Q82A79) Prolipoprotein diacylglyceryl transferase (EC...	30	6.9
62	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	30	6.9
63	IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2	30	6.9
64	Y3740_MYCTU (O69707) Hypothetical UPF0089 protein Rv3740c/MT3848	29	9.1
65	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	29	9.1
66	VNUA_PRVKA (P33485) Probable nuclear antigen	29	9.1
67	PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-s...	29	9.1
68	PETO_CHLRE (Q9LLC6) Cytochrome b6-f complex subunit petO, chloro...	29	9.1
69	ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)	29	9.1
70	OTO1_ONCKE (P83371) Otolin-1 precursor	29	9.1
71	IE63_SHV21 (P13199) 52 kDa immediate-early phosphoprotein	29	9.1
72	CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)	29	9.1
73	SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Pr...	29	9.1
74	E2F3_MOUSE (O35261) Transcription factor E2F3 (E2F-3)	29	9.1
75	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	29	9.1

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 33/63 (52%), Positives = 38/63 (60%)
 Frame = +2

Query: 8   TCSLSVSRLYLALDGVYRPIWAAFPNNPTR*PRLVGRQGPGRTGLSPSQAPLSRGLGPGP 187
           TCSLSVSR YLALDG+Y P+ AAFPNN TR         P  TG SPS    S+    GP
Sbjct: 30  TCSLSVSRQYLALDGIYHPLRAAFPNNSTRRKHFTNNWDPRHTGFSPSMTSCSKEHRQGP 89

Query: 188 SLR 196
           + +
Sbjct: 90  ATK 92

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>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 30/54 (55%), Positives = 34/54 (62%)
 Frame = +2

Query: 8   TCSLSVSRLYLALDGVYRPIWAAFPNNPTR*PRLVGRQGPGRTGLSPSQAPLSR 169
           TCSLSVSR YLALDG+Y P+ AAFPNN T        + P  TG SPS    S+
Sbjct: 45  TCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNRTPRHTGFSPSMTSCSK 98

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>PKHA4_RAT (P60669) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
 Frame = +2

Query: 101 PRLVGRQGPGRTGLSPSQAPLSRGLG------PGPSLRTRLQTTIRTAQPPDSQAGLFPV 262
           P  V R+  GRT  SP  APLSRG G      PG S   +  T  R  + P+  + L   
Sbjct: 180 PPEVNRREEGRTSESPEVAPLSRGPGRHEMHAPGSSADLQPDTWSRRTRSPEPFSPLSRP 239

Query: 263 RSPL---LGESL*VSSPPL 310
            SPL      S  V  PPL
Sbjct: 240 PSPLSLPRPRSAPVRRPPL 258

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>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 564

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 102 RASWGDRVRAGRGSHPPRRPFPGDL 176
           RA W  R +AG  +HPP  PFPG L
Sbjct: 382 RAKWRKREKAGAQTHPPGLPFPGPL 406

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>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 102 RASWGDRVRAGRGSHPPRRPFPGDL 176
           RA W  R +AG  +HPP  PFPG L
Sbjct: 380 RAKWRKREKAGAQTHPPGLPFPGPL 404

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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1459

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 27/85 (31%), Positives = 30/85 (35%)
 Frame = -3

Query: 269  ASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNES 90
            A EPG          P     G A    DR +    GAPG    P  P P  P G   + 
Sbjct: 1003 AGEPGREGSPGADGPPGR--DGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDR 1060

Query: 89   GCLGMQPKSGGRLRPRLNTGERPIA 15
            G  G Q    G + P    G R IA
Sbjct: 1061 GEAGAQ----GPMGPSGPAGARGIA 1081



 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 79  PKQPDSLTAPRGATGS-GPDGALTLPGA 159
           P+ P  +T P+GA G+ GP GA   PGA
Sbjct: 846 PQGPTGVTGPKGARGAQGPPGATGFPGA 873

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 27/85 (31%), Positives = 30/85 (35%)
 Frame = -3

Query: 269  ASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNES 90
            A EPG          P     G A    DR +    GAPG    P  P P  P G   + 
Sbjct: 963  AGEPGREGSPGADGPPGR--DGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDR 1020

Query: 89   GCLGMQPKSGGRLRPRLNTGERPIA 15
            G  G Q    G + P    G R IA
Sbjct: 1021 GEAGAQ----GPMGPSGPAGARGIA 1041



 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 79  PKQPDSLTAPRGATGS-GPDGALTLPGA 159
           P+ P  +T P+GA G+ GP GA   PGA
Sbjct: 806 PQGPTGVTGPKGARGAQGPPGATGFPGA 833

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>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)|
          Length = 299

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 27/89 (30%), Positives = 35/89 (39%)
 Frame = -3

Query: 272 TASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNE 93
           T  EPG    ++   +P E   G    A  +      G PG   +P  P P  P G   +
Sbjct: 200 TPGEPGVPA-QSEPLIPGE--PGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQ 256

Query: 92  SGCLGMQPKSGGRLRPRLNTGERPIANKY 6
            G  G  P + G   P  + GER I  KY
Sbjct: 257 PGADG-NPGAPGPAGPPGSPGERGICPKY 284

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 23/71 (32%), Positives = 27/71 (38%)
 Frame = -3

Query: 272  TASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNE 93
            TA EPG         +P     G   +  DR +    GAPG    P  P PV P G   +
Sbjct: 850  TAGEPGRDGNPGSDGLPGR--DGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGD 907

Query: 92   SGCLGMQPKSG 60
             G  G    SG
Sbjct: 908  RGETGPAGPSG 918



 Score = 29.3 bits (64), Expect = 9.1
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 17/64 (26%)
 Frame = -3

Query: 164  KGAPGRVRAP------------SGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLN 36
            +G PG   AP              P P  PRG V  SG  G    SG     G   PR N
Sbjct: 953  RGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGN 1012

Query: 35   TGER 24
             GER
Sbjct: 1013 RGER 1016

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1418

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 22/70 (31%), Positives = 24/70 (34%)
 Frame = -3

Query: 269  ASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNES 90
            A EPG          P     G A    DR +    GAPG    P  P P  P G   + 
Sbjct: 962  AGEPGREGSPGADGPPGR--DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1019

Query: 89   GCLGMQPKSG 60
            G  G Q   G
Sbjct: 1020 GEAGAQGPMG 1029



 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 79  PKQPDSLTAPRGATGS-GPDGALTLPGA 159
           P+ P  +T P+GA G+ GP GA   PGA
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGA 832

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>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein|
           dumpy-15)
          Length = 296

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 28/94 (29%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
 Frame = -3

Query: 281 PLVTASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGA 102
           P   A  PG A      A+   L  G      D       G PG       P P  P+GA
Sbjct: 188 PAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGA 247

Query: 101 VNESGCLGMQPKSG--GRLRPRLNTGERPIANKY 6
               G  G   +SG  G   P    GE+ I  KY
Sbjct: 248 PGPDGPPGADGQSGPPGPPGPAGTPGEKGICPKY 281

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>Y1441_METJA (Q58836) Hypothetical protein MJ1441|
          Length = 1226

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 403 MMPSTRRMHCIDKARTPTMRCVRRGTPAARSSAHRPLQDEGPYAASQFPKRVVGSVFWRD 582
           ++P+ R  + +D  R PT    R G   A    +R L++EG Y  +     +   + W D
Sbjct: 803 ILPTGRNFYSLDPYRIPTKSAYRVGVLLAEKLINRYLEEEGRYPENIALYWMASDIMWAD 862

Query: 583 AQ 588
            +
Sbjct: 863 GE 864

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>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 128  GRTGLSPSQAPLSRGLGPGPSLRTRLQTTI--RTAQPPDSQAGLFPVRSPLLGESL*VSS 301
            G +GL PS A +     PGP+L T  Q     RT   P + +   P ++P    SL V++
Sbjct: 1044 GHSGLPPSPAKIGNSTNPGPALATNPQNAASRRTPNNPGNPSNPGPPKTP--ENSLIVTN 1101

Query: 302  P 304
            P
Sbjct: 1102 P 1102

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/71 (32%), Positives = 25/71 (35%)
 Frame = -3

Query: 272  TASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNE 93
            TA EPG          P     G      DR +    GAPG    P  P PV P G   +
Sbjct: 1005 TAGEPGRDGNPGSDGQPGR--DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGD 1062

Query: 92   SGCLGMQPKSG 60
             G  G    SG
Sbjct: 1063 RGETGPAGPSG 1073



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
 Frame = -3

Query: 161  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLNTGER 24
            GA G   A   P P  PRG V   G  G    SG     G   PR N GER
Sbjct: 1121 GAAGHQGAIGSPGPAGPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGER 1171

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>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 128  GRTGLSPSQAPLSRGLGPGPSLRTRLQTTI--RTAQPPDSQAGLFPVRSPLLGESL*VSS 301
            G +GL PS A +     PGP+L T  Q     RT   P   +   P ++P    SL V++
Sbjct: 996  GHSGLPPSPAKIGNSTNPGPALATNPQNAASRRTPNNPGDPSNPGPPKTP--ENSLIVTN 1053

Query: 302  P 304
            P
Sbjct: 1054 P 1054

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 23/71 (32%), Positives = 25/71 (35%)
 Frame = -3

Query: 272  TASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNE 93
            TA EPG          P     G      DR +    GAPG    P  P PV P G   +
Sbjct: 1005 TAGEPGRDGNPGSDGQPGR--DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKNGD 1062

Query: 92   SGCLGMQPKSG 60
             G  G    SG
Sbjct: 1063 RGETGPAGPSG 1073



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
 Frame = -3

Query: 161  GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLNTGER 24
            GA G   A   P P  PRG V   G  G    SG     G   PR N GER
Sbjct: 1121 GAAGHQGAVGSPGPAGPRGPVGPHGPPGKDGSSGHPGPIGPPGPRGNRGER 1171

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/71 (30%), Positives = 26/71 (36%)
 Frame = -3

Query: 272  TASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNE 93
            TA EPG         +P     G      DR +    GAPG    P  P PV P G   +
Sbjct: 1006 TAGEPGRDGNPGSDGLPGR--DGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGD 1063

Query: 92   SGCLGMQPKSG 60
             G  G    +G
Sbjct: 1064 RGESGPAGPAG 1074



 Score = 30.4 bits (67), Expect = 4.1
 Identities = 34/106 (32%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
 Frame = -3

Query: 281  PLVTASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGA---PGRVRAP-------- 135
            P   A  PG A   +R A   +   GD     +R     KG    PG   AP        
Sbjct: 1069 PAGPAGAPGPAG--SRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQ 1126

Query: 134  ----SGPDPVAPRGAVNESGCLGMQPKSG-----GRLRPRLNTGER 24
                  P P  PRG V  SG  G    SG     G   PR N GER
Sbjct: 1127 QGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER 1172

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>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)|
          Length = 779

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 206 GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLG 78
           G   +  DR +    GAPG   AP  P PV P G   + G  G
Sbjct: 590 GSPGAKGDRGETGPAGAPGPPGAPGAPGPVGPAGKSGDRGETG 632

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>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = -3

Query: 281 PLVTASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGA 102
           P+     PG          P E   G+  SA         G+PG    P  P P  P GA
Sbjct: 469 PIGPQGLPGLKGEPGLPGPPGEGKVGEPGSAGPTGPPGVPGSPGLTGPPGPPGPPGPPGA 528

Query: 101 ---VNESGCLGMQPKSGGRLRPRLNTGERP 21
              ++E+G  G+   +GG     L  G +P
Sbjct: 529 PGALDETGIAGLHLPNGGVEGAVLGKGGKP 558

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>COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit)
          Length = 471

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = -3

Query: 164 KGAPGRVRAPSG-------PDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGER 24
           KG PG VR P G       P P+ PRG   + G  G+ P + G + P+  TG++
Sbjct: 150 KGRPG-VRGPRGMPGSPCSPGPIGPRGEKGDIGLTGL-PGARGPMGPKGLTGQK 201

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/61 (32%), Positives = 23/61 (37%)
 Frame = -3

Query: 260 PGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCL 81
           PG A       +P     G A  A DR +    G+PG    P GP P    G   E G  
Sbjct: 604 PGPAGKNGDVGLPGP--PGPAGPAGDRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGPK 661

Query: 80  G 78
           G
Sbjct: 662 G 662

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>LGT_MYCPA (P60972) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 427

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 540 GCGIWSLVLQGAVGRRSGCRRTASDTAHG-GRPCFINAVHP 421
           G GIW  V  GAVG   GCRR      HG   P F +A+ P
Sbjct: 100 GLGIWGAVALGAVGAWIGCRR------HGIPLPAFADALAP 134

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>EMID2_HUMAN (Q96A83) Collagen alpha-1(XXVI) chain precursor (EMI|
           domain-containing protein 2) (Emu2 protein) (Emilin and
           multimerin domain-containing protein 2)
          Length = 441

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = -3

Query: 269 ASEPGTAQLENRAAV-----PSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRG 105
           A  PG +    + A+     P++  +GD+  A+        G PG    P  P P  PRG
Sbjct: 261 AGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPPGPPGPRG 320

Query: 104 AVNESGCLGMQPKSGGR 54
                G  G Q  +G R
Sbjct: 321 PPGPPGTPGSQGLAGER 337

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>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = -3

Query: 269 ASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNES 90
           A +PG+   +  A VP +   G      D+ +   +G PG    P       PRG +   
Sbjct: 324 AGQPGSPGHQGLAGVPGQ--PGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQ 381

Query: 89  GCLGMQPKSGGR 54
           G +G +   G R
Sbjct: 382 GIMGQKGDQGER 393

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>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2|
          Length = 984

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = -3

Query: 305 EEKKLTRIPLVTASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGP 126
           EE    ++ +++  +P   Q +  AA         A +  +RA+ P +G       P+GP
Sbjct: 243 EETAGPQVRVISRPDPAAVQAQAAAA---------AQAREERAERPDRGPRPAGARPAGP 293

Query: 125 DPVAPRGAVNESGCLGMQPKSG----GRLRPRLNTGE 27
            P  PR   +  G     P+SG    G  RP    G+
Sbjct: 294 RPGGPRQGDSRPGDGRPAPRSGAPRPGGARPAAGFGQ 330

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>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 22  GLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGATGSGPDGALTLPGAP 162
           G+SP    G   PP L   P +P  +  P GATG  P G +  PG P
Sbjct: 151 GISPPGLFGERGPPGL---PGRPGPV-GPMGATGRAPKGDIPDPGPP 193

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 206  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 60
            G A    DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1017 GAAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -3

Query: 206  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 60
            G   +  DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1028 GSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAG 1076

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>CNO_HUMAN (Q9NUP1) Cappuccino protein homolog|
          Length = 217

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 64  DLGCIPKQPDSLTAPRGATGSGPDGALTLPGAPFQGTWARSVAEDASPDYNSD---GTAA 234
           D G +P+       P+GA  SG  G ++   +   G W    AED +P  +       AA
Sbjct: 7   DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAPGRDLPLLRRAAA 66

Query: 235 RFSSWAVPGS 264
            +++  +PG+
Sbjct: 67  GYAACLLPGA 76

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>C1QB_MOUSE (P14106) Complement C1q subcomponent subunit B precursor|
          Length = 253

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -3

Query: 263 EPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGC 84
           +PGT  ++    +P    +GD     ++      G PG+V  P GP  V P+G    SG 
Sbjct: 50  QPGTPGIKGEKGLPGL--AGDLGEFGEKGDPGIPGTPGKV-GPKGP--VGPKGTPGPSGP 104

Query: 83  LGMQPKSG 60
            G +  SG
Sbjct: 105 RGPKGDSG 112

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>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -3

Query: 206  GDASSATDRAQVPWKGAPGRV----RAPSGPD--PVAPRGAVNESGCLGMQPKSGGRLRP 45
            G++S+   + QVP       V    RAPS PD  P  PR     S  L  +PK   + +P
Sbjct: 2327 GESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRTPRKQATPSRVLPTKPKPNSQNKP 2386

Query: 44   R 42
            R
Sbjct: 2387 R 2387

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>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = +2

Query: 80  PNNPTR*PR-LVGRQGPGRTGLSPSQAPLSRGLGPGPSLRTRLQTTIR------TAQPPD 238
           P  PT+ P       GPG  G  P+ +P   G GPGP+L     + +R        +PP 
Sbjct: 39  PPQPTQPPPGPAAASGPGAAG--PASSPPPAGPGPGPALPAVRLSLVRLGDPDGAGEPPS 96

Query: 239 SQAGL 253
           + +GL
Sbjct: 97  TPSGL 101

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>LGT2_STRCO (Q9FBW3) Prolipoprotein diacylglyceryl transferase 2 (EC 2.4.99.-)|
          Length = 317

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -2

Query: 546 ELGCGIWSLVLQGAVGRRSGCRRTASDTAHGGRPCFINAVHP 421
           E G GIW  +  GAVG   GCRR          P F +AV P
Sbjct: 95  EGGLGIWGAIALGAVGAWIGCRRHRIPL-----PAFADAVAP 131

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>Y1102_AERPE (Q9YD10) UPF0129 protein APE1102|
          Length = 139

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 346 DLGSRSKRRALRSMGRFEAMMPSTRRMHCIDKARTPTMR 462
           D GSRS    L+S GR E + PSTR    +++AR    R
Sbjct: 47  DRGSRSLLELLQSTGRLEVLAPSTR---ALERAREEARR 82

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>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 703

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = -3

Query: 281 PLVTASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGA 102
           P+     PG          P E  +G+  +A         G+PG    P  P P  P GA
Sbjct: 473 PIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGA 532

Query: 101 ---VNESGCLGMQPKSGGRLRPRLNTGERP 21
               +E+G  G+   +GG     L  G +P
Sbjct: 533 PGAFDETGIAGLHLPNGGVEGAVLGKGGKP 562

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>ARX_BRARE (O42115) Aristaless-related homeobox protein (ARX)|
          Length = 453

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 102 RASWGDRVRAGRGSHPPRRPFPGDL 176
           RA W  R +AG  +HP   PFPG L
Sbjct: 267 RAKWRKREKAGVQAHPTGLPFPGPL 291

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>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
 Frame = -3

Query: 260 PGTAQLENRAAVPSEL*SGDASSATDRAQVPW---KGAPGRVRAPSGPDPVAPRGAVNES 90
           PG    E   AV   +  G+  S  +   V      G PG    P  P P  P G   + 
Sbjct: 201 PGAPGDEGLPAVCEPVQKGEPGSTGEPGPVGPPGPSGQPGNDGTPGQPGPKGPPGPDGKP 260

Query: 89  GCLGMQPKSGGRLRPRLNTGERPIANKY 6
           G  G  P   G + P    GER I  KY
Sbjct: 261 GADG-NPGQPGPVGPPGTPGERGICPKY 287

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>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2124

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 203  DASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGER 24
            ++ SA+   ++PW   P   R PSG + +    + + +G L   P SGG +     +G  
Sbjct: 864  ESGSASGDGEIPWSSTPTVDRLPSGGESLEGSASASGTGDLSGLP-SGGEITETSASGTE 922

Query: 23   PIA 15
             I+
Sbjct: 923  EIS 925

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>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (E3Histone)
          Length = 4377

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 100  TAPRGATGSGPDGALTLPGAPFQGTWARSVAEDASPDYNSDGTAARFSSWAVPGSLAVTR 279
            TA     G  P     + G P     +    ED+SP  +S+ ++ R S+ A+ G  A +R
Sbjct: 2884 TAGSSTPGDAPSVVAEVQGRPDVSRESNQPPEDSSPPASSESSSTRDSAVAISG--ADSR 2941

Query: 280  GIL 288
            GIL
Sbjct: 2942 GIL 2944

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>SCND1_HUMAN (P57086) SCAN domain-containing protein 1|
          Length = 179

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 275 VTASEPGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVN 96
           + A+EP  A   + AAVP E   G  SS+           P    +P  P+P +P  AV 
Sbjct: 1   MAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGSSLP--EASPPAPEPSSPNAAVP 58

Query: 95  ES 90
           E+
Sbjct: 59  EA 60

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>RL15_STAEQ (Q5HM18) 50S ribosomal protein L15|
          Length = 146

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 164 KGAPG--RVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGERPI 18
           K A G  RVR   G       G  +  G  G + +SGG+LRP    G+ P+
Sbjct: 7   KAAEGSRRVRNRVGRGAATGNGKTSGRGQKGQKARSGGKLRPGFEGGQLPL 57

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 161 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRP 45
           G PG +     P P  PRGA    G  G  P + GR+ P
Sbjct: 837 GPPGPIGNVGAPGPKGPRGAAGPPGATGF-PGAAGRVGP 874



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -3

Query: 206  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 60
            G   +  DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1017 GAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065

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>CELR2_HUMAN (Q9HCU4) Cadherin EGF LAG seven-pass G-type receptor 2 precursor|
           (Epidermal growth factor-like 2) (Multiple epidermal
           growth factor-like domains 3) (Flamingo 1)
          Length = 2923

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 256 EQPSLRIGRLCRPNCSLETRPQRRTGPKSPGKGRLGG*EPRPARTLSPHEARSTSRVVWE 77
           E P L+  RL   +C L   P  R G +SP +  LGG   R   T    +  S    V E
Sbjct: 134 EHPCLKAPRLRCQSCKLAQAPGLRAGERSPEES-LGGRRKRNVNTAPQFQPPSYQATVPE 192

Query: 76  CSPN-------RAVDSVQG 41
             P        RA+D  +G
Sbjct: 193 NQPAGTPVASLRAIDPDEG 211

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>ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc finger protein)|
          Length = 2025

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = -3

Query: 209 SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTG 30
           S D+  +T++ +     +P +  +PS          +NE  C+   P S   L+P +   
Sbjct: 803 SNDSKESTEKPEKEKSKSPEKELSPSNSSSSNKESKMNEKSCI-KSPSSTESLQPTVKQS 861

Query: 29  ERPIA 15
           ++P+A
Sbjct: 862 DQPVA 866

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>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -3

Query: 197  SSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRP 45
            + A  R    W+G    +  PSGP  +A RG V   G       S G + P
Sbjct: 868  AGAASREHARWQGGERGLSGPSGPGHMASRGGVAGRGGFAQGGHSQGHVVP 918

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>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 46  GRSLPPDLGCIPK--QPDSLTAPRGATGSGPDGALTLPGAPFQG 171
           GR LPP LG  PK  Q  +L     A G+  D  L   G PF G
Sbjct: 637 GRLLPPGLGLEPKSAQDKALLQMVEAAGAAEDDPLRRTGRPFGG 680

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>NU4M_XENLA (P03912) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 461

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 465 TAHGGRPCFINAVHPTRRRHHGLETTHRTKCTSLRPRPQV 346
           T  G  P  +NA++PT  R H L T H      L  +P++
Sbjct: 416 TQRGMTPEHLNAINPTHTREHTLMTMHLIPIIPLMMKPEL 455

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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -3

Query: 260 PGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCL 81
           PG+   +  A VP +   G      D+ +   +G PG    P       PRG +   G +
Sbjct: 326 PGSPGHQGLAGVPGQ--PGTKGGPGDKGEPGQQGLPGVSGPPGKEGEPGPRGEIGPQGIM 383

Query: 80  GMQPKSGGR 54
           G +   G R
Sbjct: 384 GQKGDQGER 392



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 161 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRL 51
           GAPG    P  P PV   G    + CLG    +  RL
Sbjct: 643 GAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSARL 679

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>BTBDA_PONPY (Q5R585) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
 Frame = -2

Query: 516 LQGAVG--RRSGCRRTASDTAHGGR---------PCFINAVHPTRRRHHGLETTHRTKCT 370
           L GA G   RS  RR +SD +             PC  N   PTR+ H   E  H +   
Sbjct: 51  LHGASGGHERSRDRRRSSDRSRDSSHERTESQLTPCIRNVTSPTRQHHVEREKDHSSSRP 110

Query: 369 SLRPRPQ 349
           S  PRPQ
Sbjct: 111 S-SPRPQ 116

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>BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
 Frame = -2

Query: 516 LQGAVG--RRSGCRRTASDTAHGGR---------PCFINAVHPTRRRHHGLETTHRTKCT 370
           L GA G   RS  RR +SD +             PC  N   PTR+ H   E  H +   
Sbjct: 51  LHGASGGHERSRDRRRSSDRSRDSSHERAESQLTPCIRNVTSPTRQHHIEREKDHSSSRP 110

Query: 369 SLRPRPQ 349
           S  PRPQ
Sbjct: 111 S-SPRPQ 116

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>BTBDA_HUMAN (Q9BSF8) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
 Frame = -2

Query: 516 LQGAVG--RRSGCRRTASDTAHGGR---------PCFINAVHPTRRRHHGLETTHRTKCT 370
           L GA G   RS  RR +SD +             PC  N   PTR+ H   E  H +   
Sbjct: 51  LHGASGGHERSRDRRRSSDRSRDSSHERTESQLTPCIRNVTSPTRQHHVEREKDHSSSRP 110

Query: 369 SLRPRPQ 349
           S  PRPQ
Sbjct: 111 S-SPRPQ 116

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 206 GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 60
           G+      R Q    G PG V AP  P P  P+G   E G  G+  K G
Sbjct: 624 GETGFPGPRGQEGLPGKPGIVGAPGLPGPPGPKG---EPGLTGLPEKPG 669

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -3

Query: 206  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 60
            G   +  DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1017 GAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065

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>YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III|
          Length = 724

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 154 GAPFQGTWARSVAEDASPDYNSDGTAARFSSWAVPGSLAVTRG 282
           G P QG W   +++D  P Y +  T  + + W  P    +T+G
Sbjct: 122 GQPQQGQWKEFMSDDGKPYYYN--TLTKKTQWVKPDGEEITKG 162

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>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = -2

Query: 186 GPGPSPLERGAWEGESPVRPGPCRPTRRGQRVGLFGNAAQIGR*TP 49
           GPGP P  RG         P P  P  RG R G  G     GR  P
Sbjct: 697 GPGPGPYHRGRGGRGGNEPPPPPPPPFRGARGGRSGGGPPNGRGGP 742

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>MYO10_BOVIN (P79114) Myosin-10 (Myosin X)|
          Length = 2052

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
 Frame = +1

Query: 73   CIPKQPDSLTAPRG----ATGSGPDGALTLPGAPFQGTWARSVAEDASPD-------YNS 219
            C+P+ P +L AP G          DGA+T   +    T++ S +   SPD       YNS
Sbjct: 1068 CLPQTPGALPAPEGDYDYDQDDYEDGAITSGSSV---TFSNSCSSQWSPDYRCSVGTYNS 1124

Query: 220  DGTAARFSS 246
             G A RFSS
Sbjct: 1125 SG-AYRFSS 1132

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>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor|
          Length = 1019

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/51 (41%), Positives = 22/51 (43%)
 Frame = -3

Query: 206 GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGR 54
           GDA    D  Q   KG PGR     G     PRGA  E G  G +   GGR
Sbjct: 493 GDAGPRGDSGQPGPKGDPGR----PGFSYPGPRGAPGEKGEPGPRGPEGGR 539

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>COL2_CAEEL (P17656) Cuticle collagen 2 precursor|
          Length = 301

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -3

Query: 161 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRP 45
           G PG    PSGP P  P G    +G  G     GG   P
Sbjct: 171 GNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEP 209

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>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
           (Endostatin-XV)]
          Length = 1367

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 161 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG--GRLRPRLNTGER 24
           G+PG   AP  P P  P G     G  G Q   G  G   P  + GE+
Sbjct: 632 GSPGEDGAPGEPGPQGPEGQPGLDGASGQQGMKGEKGARGPNGSAGEK 679

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>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -3

Query: 260 PGTAQLENRAAVPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCL 81
           PG   + + + +P  L +     +  R      GAP R R     + VAPR A  +    
Sbjct: 558 PGAESVIHPSMMPQPLNASRTDLSISRNSPGPGGAPARSRTSEYYEDVAPRFATPDPSLR 617

Query: 80  G--MQPKSGGRLRPRLN 36
           G  +  ++GGR+ P +N
Sbjct: 618 GTPVPGQAGGRIPPPIN 634

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>LGT_STRAW (Q82A79) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 340

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 546 ELGCGIWSLVLQGAVGRRSGCRR 478
           E G GIW  +  GAVG   GCRR
Sbjct: 95  EGGLGIWGAIALGAVGAWIGCRR 117

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -3

Query: 206  GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSG 60
            G      DR +    G PG   AP  P PV P G   + G  G    +G
Sbjct: 1024 GSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1072

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>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2|
          Length = 913

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 30/101 (29%), Positives = 43/101 (42%)
 Frame = -3

Query: 407 IMASKRPIERSARRFDRDPRSGGTTR*V*AYK*AEEKKLTRIPLVTASEPGTAQLENRAA 228
           ++ +K+  E  ARR   + +     +   A + AEE    +   V AS+P     E RA 
Sbjct: 146 VVEAKQRAEDEARRKVEEEQRIAAEKMEAANRAAEEAAAAK---VAASQPAA---EVRAE 199

Query: 227 VPSEL*SGDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRG 105
             SE  +  A+ A      P   A     AP+ PD  APRG
Sbjct: 200 PASERPAAAAAPAPRTDARPQSAAAAPRSAPATPDAAAPRG 240

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>Y3740_MYCTU (O69707) Hypothetical UPF0089 protein Rv3740c/MT3848|
          Length = 448

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 346 DLGSRSKRRALRSMGRFEAMMPSTRRMH--CIDKAR----TPTMRCVRRGTPAARSSAHR 507
           DLG  ++R AL + GR   ++  T R+H   +D+ R    T  +  +R G  A  S  H 
Sbjct: 77  DLGYHARRSALPAPGRVRELLELTSRLHSNLLDRHRPLWETHVIEGLRDGRFAIYSKMHH 136

Query: 508 PLQD 519
            L D
Sbjct: 137 ALVD 140

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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 164  KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRL 39
            KG PG    P    P  P G   + G +GM  + G R  P L
Sbjct: 965  KGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGL 1006

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 167  WKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGG 57
            W+  P   R P   D V PRG  +  GC G     GG
Sbjct: 1624 WRRGPRPRRRPGLTDRVPPRGGPSPRGCRGAGRAGGG 1660

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>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 203  DASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQP-KSGGRLRPRLNTG 30
            ++ SA+   +VPW   P   R PSG +  +P G+ + SG   +    SGG +     +G
Sbjct: 868  ESGSASGDGEVPWSHTPTVGRLPSGGE--SPEGSASASGTGDLSGLPSGGEITETSTSG 924

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>PETO_CHLRE (Q9LLC6) Cytochrome b6-f complex subunit petO, chloroplast|
           precursor (Cytochrome b6-f-associated phosphoprotein)
           (Cytochrome b6-f complex subunit V) (suV)
          Length = 198

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 439 KARTPTMRCVRRGTPAARSSAHRPLQDEGPYAASQFPKRVVGSVFWRDAQAGV 597
           + +TP   C  R   + R SAH+   ++   AA+ F   V  +V    A AGV
Sbjct: 4   RCKTPAATCAARSRRSVRVSAHKGAFEQAQVAAAAF---VAAAVIAAPANAGV 53

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>ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)|
          Length = 747

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 1   SRYLFAIGLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGATGSGPDGAL--TLPGAP 162
           +R    IG  P F LG    P +G     P +  A     G+G  GAL   +PGAP
Sbjct: 410 ARGAVGIGGIPTFGLGPGGFPGIGDAAAAPAAAAAKAAKIGAGGVGALGGVVPGAP 465

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>OTO1_ONCKE (P83371) Otolin-1 precursor|
          Length = 508

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 206 GDASSATDRAQVPWKGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLN 36
           GD     D+      GAPG +        + P+G   E+G  G++   G R +P  N
Sbjct: 189 GDKGDKGDQGDTGMPGAPGILGKEGPKGDLGPKGEKGETGLPGLKGDLGERGKPGWN 245

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>IE63_SHV21 (P13199) 52 kDa immediate-early phosphoprotein|
          Length = 417

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +3

Query: 54  STARFG----LHSQTTRLVDRASWGDRVRAGRGSHPPRRPF 164
           S  RFG    + S +T    + SW DRVR       P RPF
Sbjct: 85  SPMRFGKRPRISSNSTSRSCKTSWADRVREAAAQRRPSRPF 125

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>CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)|
          Length = 210

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -3

Query: 161 GAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRLNTGERPIANKY 6
           GAPG   AP  P    PRG     G  G     G   +P    GER +  KY
Sbjct: 145 GAPGHPGAPGAPGEKGPRGQDGHPGAPGNAGHPGQPGQPG-PPGERGVCPKY 195

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>SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Proline-glutamate|
            repeat-containing protein)
          Length = 1247

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
 Frame = +1

Query: 76   IPKQPDSLTAPRG----ATG-----SGPDGALTLPGAPFQGTWARSVAEDASPDYNSDGT 228
            IP QP  + A +     A G      GP GAL  P AP       S A   SP       
Sbjct: 980  IPSQPPPVPAKKSRERLANGLHPVPMGPSGALPSPDAPCLPVKRGSPASPTSPSDCPPAL 1039

Query: 229  AARFSSWAVPGSLAVTR 279
            A R  S   PGS   TR
Sbjct: 1040 APRPLSGQAPGSPPSTR 1056

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>E2F3_MOUSE (O35261) Transcription factor E2F3 (E2F-3)|
          Length = 457

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 571 TRSQPPSSGIGMRHMVPRPARGGGPKIGLPAYR 473
           T  Q PSS +G+    P P RGGG   G PA R
Sbjct: 96  TTPQGPSSRVGLLQQPPAPGRGGGG--GPPAKR 126

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -3

Query: 164 KGAPGRVRAPSGPDPVAPRGAVNESGCLGMQPKSGGRLRPRL 39
           KG PG V     P P  P G   E G  G+    G +  P L
Sbjct: 619 KGEPGNVGPAGAPGPAGPGGIPGERGVAGVPGGKGEKGAPGL 660


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,093,319
Number of Sequences: 219361
Number of extensions: 2949295
Number of successful extensions: 11661
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 9095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11515
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result