ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13m08 |
|---|---|
| Clone Library Name | barley_pub |
>LTAA_AERJA (O07051) L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA)| (L-allo-threonine acetaldehyde-lyase) Length = 338 Score = 74.3 bits (181), Expect = 8e-14 Identities = 37/77 (48%), Positives = 50/77 (64%) Frame = -1 Query: 254 KAKILRKTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQFTVDLAS 75 +A+ LRK +GGGMRQ GIL A A++ V +LADDHR+A+ LA+GL + +DLA Sbjct: 218 RARRLRKMVGGGMRQAGILAQAGLFALQQHVVRLADDHRRARQLAEGLAALPGIRLDLAQ 277 Query: 74 VETNMVFFDIADPRITP 24 V+TNMVF + P Sbjct: 278 VQTNMVFLQLTSGESAP 294
>GLY1_ASHGO (O74267) Threonine aldolase (EC 4.1.2.5)| Length = 382 Score = 49.7 bits (117), Expect = 2e-06 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Frame = -1 Query: 254 KAKILRKTLGGGMRQVGILCAAAYVAVR-DTVGKLADDHRKAKVLADGLKKIKQFTVDLA 78 KA RK GGG+RQ G++C A VA++ D GK+ HR A LA + + + L Sbjct: 233 KANHFRKQQGGGVRQSGMMCKMAMVAIQGDWKGKMRRSHRMAHELA---RFCAEHGIPLE 289 Query: 77 S-VETNMVFFDIADPRITPDKL 15 S +TN VF D+ ++ PD L Sbjct: 290 SPADTNFVFLDLQKSKMNPDVL 311
>LTAE_ECOLI (P75823) Low specificity L-threonine aldolase (EC 4.1.2.5) (Low| specificity L-TA) Length = 333 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/67 (37%), Positives = 41/67 (61%) Frame = -1 Query: 239 RKTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQFTVDLASVETNM 60 RK GGGMRQ GIL AA A+++ V +L +DH A +A+ ++++ D+ +TNM Sbjct: 221 RKMTGGGMRQSGILAAAGIYALKNNVARLQEDHDNAAWMAE---QLREAGADVMRQDTNM 277 Query: 59 VFFDIAD 39 +F + + Sbjct: 278 LFVRVGE 284
>LTAE_ECO57 (P58319) Low specificity L-threonine aldolase (EC 4.1.2.5)| (Low-specificity L-TA) Length = 333 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/67 (37%), Positives = 41/67 (61%) Frame = -1 Query: 239 RKTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQFTVDLASVETNM 60 RK GGGMRQ GIL AA A+++ V +L +DH A +A+ ++++ D+ +TNM Sbjct: 221 RKMTGGGMRQSGILAAAGMYALKNNVARLQEDHDNAAWMAE---QLREAGADVMRQDTNM 277 Query: 59 VFFDIAD 39 +F + + Sbjct: 278 LFVRVGE 284
>GLY1_CANAL (O13427) Threonine aldolase (EC 4.1.2.5)| Length = 374 Score = 45.1 bits (105), Expect = 5e-05 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Frame = -1 Query: 254 KAKILRKTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQFTVDLAS 75 KA +K GGG+RQ GI+ A A A+ + KL H AK + D ++ + L S Sbjct: 232 KANHFKKQSGGGIRQAGIMSAMAIHAIDYNLSKLELSHNYAKQIGD---FCQEHGIKLES 288 Query: 74 -VETNMVFFDIADPRITPDKLCQV 6 V+T++VF D+ ++ P++L ++ Sbjct: 289 PVDTSLVFLDLKANKMDPNRLVEL 312
>YF64_CAEEL (Q21890) Hypothetical protein R102.4 in chromosome IV| Length = 433 Score = 44.3 bits (103), Expect = 8e-05 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = -1 Query: 254 KAKILRKTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLA 120 +A+ RK LGGG RQ GIL AAA++A+ + DH +AK LA Sbjct: 304 RARHSRKALGGGWRQSGILAAAAHIALDHADATIRADHERAKTLA 348
>GLY1_YEAST (P37303) Low specificity L-threonine aldolase (EC 4.1.2.5) (Low| specificity L-TA) (TA) Length = 387 Score = 35.4 bits (80), Expect = 0.039 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = -1 Query: 254 KAKILRKTLGGGMRQVGILCAAAYVAVR-DTVGKLADDHRKAKVLADGLKKIKQFTVDLA 78 KA RK GGG+RQ G++ A V + D +L H A LA+ + K ++ + Sbjct: 232 KATHFRKQQGGGIRQSGMMARIALVNINNDWKSQLLYSHSLAHELAEYCEA-KGIPLE-S 289 Query: 77 SVETNMVFFDIADPRITPDKL 15 +TN VF ++ R+ PD L Sbjct: 290 PADTNFVFINLKAARMDPDVL 310
>GLY1_SCHPO (O13940) Probable threonine aldolase (EC 4.1.2.5)| Length = 376 Score = 34.7 bits (78), Expect = 0.067 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = -1 Query: 254 KAKILRKTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLAD 117 KAK RK GGG+RQ G+L AA +++ L H+ A +A+ Sbjct: 245 KAKWFRKAYGGGLRQSGMLAAAGLYSIQHNFPLLKQVHKYAIEVAE 290
>TOXG_COCCA (Q9UW18) Alanine racemase TOXG (EC 5.1.1.1)| Length = 389 Score = 33.5 bits (75), Expect = 0.15 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 13/78 (16%) Frame = -1 Query: 239 RKTLGGGMRQVGILCAAAYVAVRDTVG--------KLADDHRKAKVLAD-----GLKKIK 99 RK +GGGMRQ G++ AAA A+ + G L H+ AK L + G K K Sbjct: 259 RKGIGGGMRQGGVITAAAREALFENFGLGAEIESQTLLQVHKVAKRLGEEWTRKGGKLSK 318 Query: 98 QFTVDLASVETNMVFFDI 45 + +ETN+++ D+ Sbjct: 319 E-------IETNIIWLDL 329
>COG3_DROME (Q961G1) Putative conserved oligomeric Golgi complex component 3| Length = 905 Score = 29.6 bits (65), Expect = 2.1 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = +1 Query: 64 LVSTEAKSTVNCLIFFSPSAKTLAFLWSSASLPTVSRTAT*AAAQR 201 L++T ST + +I PSA+ ++ L SSAS+ A+ AAA R Sbjct: 793 LLTTNGYSTDDMIITSCPSAEQVSILLSSASILAAEGVASFAAAAR 838
>TRPA_BACHD (Q9KCA9) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 265 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = -1 Query: 206 GILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQFTVDLAS 75 G++ +A V + VG+L D+ + L DGL KIK+F +L S Sbjct: 224 GVVVGSAIVKL---VGELEDELNDPEKLEDGLFKIKRFVSELIS 264
>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156| Length = 903 Score = 28.9 bits (63), Expect = 3.6 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -1 Query: 248 KILRKTLGGGMRQVGILCA-AAYVAVRDTVGKLADDHRKAKVLADGLKKIKQFTVDLASV 72 ++ +KT G + LC AA +AVR+++GK D K + L + L+ I T A+V Sbjct: 647 ELAKKTEGYTGADIEALCREAAMLAVRESIGKPWDIEVKLRELINYLQSISG-TFRAAAV 705 Query: 71 ETNMV 57 E N V Sbjct: 706 ELNSV 710
>DHE2_CLODI (P27346) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 421 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = -1 Query: 227 GGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQFTV 87 GG + + V R+ KL D +KAK+ G+ + +TV Sbjct: 182 GGSLGRTAATGFGVAVTAREAAAKLGIDMKKAKIAVQGIGNVGSYTV 228
>RS5_RICTY (Q68W95) 30S ribosomal protein S5| Length = 175 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 236 KTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQ 96 K + GG R +AYV V D G++ H KAK + + K KQ Sbjct: 23 KVVKGGRR----FAFSAYVVVGDKAGRVGAGHGKAKEVNEARGKAKQ 65
>RS5_RICPR (Q9ZCS2) 30S ribosomal protein S5| Length = 175 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 236 KTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQ 96 K + GG R +AYV V D G++ H KAK + + K KQ Sbjct: 23 KVVKGGRR----FAFSAYVVVGDKAGRVGAGHGKAKEVNEARGKAKQ 65
>GLPO_STRPN (P35596) Alpha-glycerophosphate oxidase (EC 1.1.3.21)| (Glycerol-3-phosphate oxidase) (Exported protein 6) Length = 608 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Frame = -1 Query: 230 LGGGMRQVGILCAAAYVAVRDTVGKLAD-----DHRKAKVLADGLKKIKQFTVDLAS 75 +GGG+ G+ AA + + ++ D R K++ GL+ +KQF V++ S Sbjct: 25 IGGGITGAGVALQAAASGLETGLIEMQDFAEGTSSRSTKLVHGGLRYLKQFDVEVVS 81
>RS5_RICFE (Q4UMR2) 30S ribosomal protein S5| Length = 176 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 236 KTLGGGMRQVGILCAAAYVAVRDTVGKLADDHRKAKVLADGLKKIKQ 96 K + GG R +AYV V D G++ H KAK + + K KQ Sbjct: 23 KVVKGGRR----FAFSAYVVVGDKAGRVGAGHGKAKEVNEARGKAKQ 65
>XKDJ_BACSU (P54330) Phage-like element PBSX protein xkdJ| Length = 146 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 112 SPSAKTLAFLWSSASLPTVSRTAT*AAAQRIPTCLIPPPSVF 237 S + +AFL+S S+P R ++P+ +PPPSVF Sbjct: 3 SETGSIMAFLYSRWSVPIYERELP--DHFQVPSLYVPPPSVF 42
>GLPO_STRP8 (Q8NZX0) Alpha-glycerophosphate oxidase (EC 1.1.3.21)| (Glycerol-3-phosphate oxidase) Length = 612 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Frame = -1 Query: 230 LGGGMRQVGILCAAAYVAVRDTVGKLAD-----DHRKAKVLADGLKKIKQFTVDLAS--V 72 +GGG+ G+ AA + + ++ D R K++ GL+ +KQF V++ S V Sbjct: 25 IGGGITGAGVALQAAASGLDTGLIEMQDFAQGTSSRSTKLVHGGLRYLKQFDVEVVSDTV 84 Query: 71 ETNMVFFDIADPRITPDKL 15 V IA PD + Sbjct: 85 SERAVVQQIAPHIPKPDPM 103
>GLPO_STRP6 (Q5XAK0) Alpha-glycerophosphate oxidase (EC 1.1.3.21)| (Glycerol-3-phosphate oxidase) Length = 612 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Frame = -1 Query: 230 LGGGMRQVGILCAAAYVAVRDTVGKLAD-----DHRKAKVLADGLKKIKQFTVDLAS--V 72 +GGG+ G+ AA + + ++ D R K++ GL+ +KQF V++ S V Sbjct: 25 IGGGITGAGVALQAAASGLDTGLIEMQDFAEGTSSRSTKLVHGGLRYLKQFDVEVVSDTV 84 Query: 71 ETNMVFFDIADPRITPDKL 15 V IA PD + Sbjct: 85 SERAVVQQIAPHIPKPDPM 103
>GLPO_STRP3 (Q8K666) Alpha-glycerophosphate oxidase (EC 1.1.3.21)| (Glycerol-3-phosphate oxidase) Length = 612 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Frame = -1 Query: 230 LGGGMRQVGILCAAAYVAVRDTVGKLAD-----DHRKAKVLADGLKKIKQFTVDLAS--V 72 +GGG+ G+ AA + + ++ D R K++ GL+ +KQF V++ S V Sbjct: 25 IGGGITGAGVALQAAASGLDTGLIEMQDFAQGTSSRSTKLVHGGLRYLKQFDVEVVSDTV 84 Query: 71 ETNMVFFDIADPRITPDKL 15 V IA PD + Sbjct: 85 SERAVVQQIAPHIPKPDPM 103
>GLPO_STRP1 (Q99YI8) Alpha-glycerophosphate oxidase (EC 1.1.3.21)| (Glycerol-3-phosphate oxidase) Length = 612 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Frame = -1 Query: 230 LGGGMRQVGILCAAAYVAVRDTVGKLAD-----DHRKAKVLADGLKKIKQFTVDLAS--V 72 +GGG+ G+ AA + + ++ D R K++ GL+ +KQF V++ S V Sbjct: 25 IGGGITGAGVALQAAASGLDTGLIEMQDFAQGTSSRSTKLVHGGLRYLKQFDVEVVSDTV 84 Query: 71 ETNMVFFDIADPRITPDKL 15 V IA PD + Sbjct: 85 SERAVVQQIAPHIPKPDPM 103
>TRPD2_STRCO (Q9Z4W9) Anthranilate phosphoribosyltransferase 2 (EC 2.4.2.18)| Length = 335 Score = 27.7 bits (60), Expect = 8.1 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -1 Query: 251 AKILRKTLGGGM---RQVGILCAAAYVAVRDTVGKLADDHRKAKVLADG 114 A +LR+ L GG R V +L AAA + V G +D R A DG Sbjct: 262 AAVLRRVLAGGRGPARDVVLLNAAAALRVAGVAGTWSDGLRLAASAVDG 310
>LEPA_XYLFT (Q87C09) GTP-binding protein lepA| Length = 602 Score = 27.7 bits (60), Expect = 8.1 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%) Frame = +1 Query: 16 SLSGVMRGSAISKNTILVSTEAKS-TVNCLIFFSPSAKTLAFL------WSSASLPTV 168 SL VM+G N +LV + +S V+ + F+P KTLA L W +AS+ V Sbjct: 213 SLVRVMQGEITPGNKLLVMSTGRSHQVDAVGVFTPKRKTLAKLTAGEVGWVTASIKDV 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,824,532 Number of Sequences: 219361 Number of extensions: 694571 Number of successful extensions: 2133 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2127 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
