ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13m08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473181.1| Oryza sativa (japonica cultivar-group), predic... 283 1e-73
2dbj|AK099280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 1e-73
3dbj|AK059652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 1e-73
4gb|BT018937.1| Zea mays clone Contig81.F mRNA sequence 186 2e-44
5gb|BT017119.1| Zea mays clone EL01N0364D05.c mRNA sequence 182 4e-43
6gb|BT016559.1| Zea mays clone Contig392 mRNA sequence 155 8e-35
7emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4,... 149 5e-33
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 149 5e-33
9emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4,... 149 5e-33
10gb|BT018736.1| Zea mays clone EL01N0520D02.d mRNA sequence 129 5e-27
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 96 6e-17
12dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 96 6e-17
13dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 96 6e-17
14gb|AY111020.1| Zea mays CL189_1 mRNA sequence 88 2e-14
15gb|AF466202.2| Zea mays putative pol protein gene, partial cds; ... 56 6e-05
16gb|AC118750.13| Mus musculus chromosome 10, clone RP24-198J23, c... 42 0.83
17gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, comp... 40 3.3
18gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosom... 40 3.3
19gb|AC149304.11| Medicago truncatula clone mth2-76g4, complete se... 40 3.3
20emb|AL596178.4| Human DNA sequence from clone RP11-236L13 on chr... 40 3.3
21emb|BX276181.15| Zebrafish DNA sequence from clone CH211-247O20 ... 40 3.3
22dbj|AB183488.1| Oryzias latipes DNA, MHC class I region 40 3.3
23gb|AC010134.5| Homo sapiens BAC clone RP11-127K18 from 2, comple... 40 3.3
24emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chro... 40 3.3
25dbj|AB021490.2| Oryzias latipes gene for membrane guanylyl cycla... 40 3.3

>ref|XM_473181.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score =  283 bits (143), Expect = 1e-73
 Identities = 224/251 (89%)
 Strand = Plus / Minus

                                                                       
Query: 4   aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccata 63
           ||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||
Sbjct: 926 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaataccata 867

                                                                       
Query: 64  ttggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgct 123
           |||||||||||||||| |  ||||||| |||| || || ||||||||||| |||||||||
Sbjct: 866 ttggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagaccatctgct 807

                                                                       
Query: 124 aaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaaca 183
           |||||||| ||| | ||||||||||| || || || || || ||||||||||| ||||||
Sbjct: 806 aaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacggcaaca 747

                                                                       
Query: 184 taggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcctaaga 243
           |||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 746 taggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcctaaga 687

                      
Query: 244 attttggcctt 254
           ||||| |||||
Sbjct: 686 attttagcctt 676



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>dbj|AK099280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133K04, full
            insert sequence
          Length = 1381

 Score =  283 bits (143), Expect = 1e-73
 Identities = 224/251 (89%)
 Strand = Plus / Minus

                                                                        
Query: 4    aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccata 63
            ||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||
Sbjct: 1059 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaataccata 1000

                                                                        
Query: 64   ttggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgct 123
            |||||||||||||||| |  ||||||| |||| || || ||||||||||| |||||||||
Sbjct: 999  ttggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagaccatctgct 940

                                                                        
Query: 124  aaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaaca 183
            |||||||| ||| | ||||||||||| || || || || || ||||||||||| ||||||
Sbjct: 939  aaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacggcaaca 880

                                                                        
Query: 184  taggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcctaaga 243
            |||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 879  taggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcctaaga 820

                       
Query: 244  attttggcctt 254
            ||||| |||||
Sbjct: 819  attttagcctt 809



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>dbj|AK059652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C08, full
            insert sequence
          Length = 1389

 Score =  283 bits (143), Expect = 1e-73
 Identities = 224/251 (89%)
 Strand = Plus / Minus

                                                                        
Query: 4    aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccata 63
            ||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||
Sbjct: 1061 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaataccata 1002

                                                                        
Query: 64   ttggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgct 123
            |||||||||||||||| |  ||||||| |||| || || ||||||||||| |||||||||
Sbjct: 1001 ttggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagaccatctgct 942

                                                                        
Query: 124  aaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaaca 183
            |||||||| ||| | ||||||||||| || || || || || ||||||||||| ||||||
Sbjct: 941  aaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacggcaaca 882

                                                                        
Query: 184  taggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcctaaga 243
            |||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 881  taggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcctaaga 822

                       
Query: 244  attttggcctt 254
            ||||| |||||
Sbjct: 821  attttagcctt 811



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>gb|BT018937.1| Zea mays clone Contig81.F mRNA sequence
          Length = 1352

 Score =  186 bits (94), Expect = 2e-44
 Identities = 214/254 (84%)
 Strand = Plus / Minus

                                                                        
Query: 1    tccaggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60
            |||| |||||| |||||||||||||||| ||| | |||||||  ||  ||||||||||||
Sbjct: 1022 tccaagacttggcacagtttgtcaggtgatattcttggatccatgacctcaaagaatacc 963

                                                                        
Query: 61   atattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatct 120
            ||||||||||| || |||||| | || ||||||| ||| |  |||||||||||||| |||
Sbjct: 962  atattggtctcgaccgaagctgagtccactgtaatctgctcgattttcttcagtccctct 903

                                                                        
Query: 121  gctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgca 180
            || ||| |||| ||||||||||||||||| || ||||| ||||| ||||| ||||  |||
Sbjct: 902  gccaaagctttagccttcctatggtcatccgcaagctttcccacagtgtcacgaatggca 843

                                                                        
Query: 181  acataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttccta 240
            ||||  ||||||||||| |||| ||| ||||| ||||||||||| ||||| |||||||  
Sbjct: 842  acatgagcagcagcacaaagaactcccacctgtctcattccaccgcctagggtcttccgg 783

                          
Query: 241  agaattttggcctt 254
            |||||| |||||||
Sbjct: 782  agaattctggcctt 769



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>gb|BT017119.1| Zea mays clone EL01N0364D05.c mRNA sequence
          Length = 1417

 Score =  182 bits (92), Expect = 4e-43
 Identities = 185/216 (85%)
 Strand = Plus / Plus

                                                                       
Query: 31  atgcgtggatccgcgatatcaaagaataccatattggtctccactgaagctaaatcaact 90
           |||||||||||| ||||||||||||| |||||||||||||| || |||| | |||| || 
Sbjct: 353 atgcgtggatccacgatatcaaagaacaccatattggtctcgaccgaagatgaatccacc 412

                                                                       
Query: 91  gtaaactgtttaattttcttcagtccatctgctaaaactttggccttcctatggtcatcg 150
           || |||||||||||||| ||||| || ||||| ||  |||| |||||||| || ||||| 
Sbjct: 413 gtgaactgtttaattttgttcaggccctctgccaaggctttagccttcctgtgatcatcc 472

                                                                       
Query: 151 gcgagcttgcccacggtgtcgcgaaccgcaacataggcagcagcacagagaattcctacc 210
           || ||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| |||
Sbjct: 473 gcaagctttcccacggtgtcacgaacagcaacataagcagcggcacaaagaactccaacc 532

                                               
Query: 211 tgcctcattccaccacctagtgtcttcctaagaatt 246
           |||||||| ||||| ||||| |||||||||||||||
Sbjct: 533 tgcctcatcccaccgcctagggtcttcctaagaatt 568



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>gb|BT016559.1| Zea mays clone Contig392 mRNA sequence
          Length = 1322

 Score =  155 bits (78), Expect = 8e-35
 Identities = 201/242 (83%)
 Strand = Plus / Plus

                                                                       
Query: 13  cacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccatattggtctcc 72
           ||||| |||| || || |||||||| |||| | || || |||||||||||||||||||  
Sbjct: 212 cacagcttgttagatgatatgcgtgaatccacaatgtccaagaataccatattggtctgg 271

                                                                       
Query: 73  actgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgctaaaactttg 132
           ||||| ||| |||| ||| | |||||||  ||||| |||||||| ||||| ||| |||| 
Sbjct: 272 actgatgctgaatccactctgaactgttcgattttattcagtccgtctgccaaagcttta 331

                                                                       
Query: 133 gccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaacataggcagca 192
           ||||| || |||||||| || ||||| |||||  ||||  |||| |||||||  ||||||
Sbjct: 332 gcctttctgtggtcatctgcaagctttcccacattgtcatgaacggcaacatgagcagca 391

                                                                       
Query: 193 gcacagagaattcctacctgcctcattccaccacctagtgtcttcctaagaattttggcc 252
           |||||||||| ||| ||||| ||||||||||||||||| |||||||  ||||||||||||
Sbjct: 392 gcacagagaactccaacctgtctcattccaccacctagggtcttccggagaattttggcc 451

             
Query: 253 tt 254
           ||
Sbjct: 452 tt 453



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>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
             complete sequence
          Length = 139080

 Score =  149 bits (75), Expect = 5e-33
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                         
Query: 119   ctgctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccg 178
             ||||||||||||| ||| | ||||||||||| || || || || || ||||||||||| |
Sbjct: 18657 ctgctaaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacgg 18716

                                                                         
Query: 179   caacataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcc 238
             ||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 18717 caacataggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcc 18776

                            
Query: 239   taagaattttggcct 253
             |||||||||| ||||
Sbjct: 18777 taagaattttagcct 18791



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                      
Query: 4     aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60
             ||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct: 18355 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaatacc 18411



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 58    accatattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtcca 117
             |||||||||||||||||||||| |  ||||||| |||| || || ||||||||||| |||
Sbjct: 18502 accatattggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagacca 18561

                
Query: 118   tct 120
             |||
Sbjct: 18562 tct 18564



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  149 bits (75), Expect = 5e-33
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                            
Query: 119      ctgctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccg 178
                ||||||||||||| ||| | ||||||||||| || || || || || ||||||||||| |
Sbjct: 25801247 ctgctaaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacgg 25801306

                                                                            
Query: 179      caacataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcc 238
                ||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 25801307 caacataggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcc 25801366

                               
Query: 239      taagaattttggcct 253
                |||||||||| ||||
Sbjct: 25801367 taagaattttagcct 25801381



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                         
Query: 4        aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60
                ||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct: 25800945 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaatacc 25801001



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 58       accatattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtcca 117
                |||||||||||||||||||||| |  ||||||| |||| || || ||||||||||| |||
Sbjct: 25801092 accatattggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagacca 25801151

                   
Query: 118      tct 120
                |||
Sbjct: 25801152 tct 25801154



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>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01,
              complete sequence
          Length = 127712

 Score =  149 bits (75), Expect = 5e-33
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                          
Query: 119    ctgctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccg 178
              ||||||||||||| ||| | ||||||||||| || || || || || ||||||||||| |
Sbjct: 124173 ctgctaaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacgg 124232

                                                                          
Query: 179    caacataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcc 238
              ||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 124233 caacataggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcc 124292

                             
Query: 239    taagaattttggcct 253
              |||||||||| ||||
Sbjct: 124293 taagaattttagcct 124307



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                       
Query: 4      aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60
              ||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct: 123871 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaatacc 123927



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 58     accatattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtcca 117
              |||||||||||||||||||||| |  ||||||| |||| || || ||||||||||| |||
Sbjct: 124018 accatattggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagacca 124077

                 
Query: 118    tct 120
              |||
Sbjct: 124078 tct 124080



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>gb|BT018736.1| Zea mays clone EL01N0520D02.d mRNA sequence
          Length = 1773

 Score =  129 bits (65), Expect = 5e-27
 Identities = 175/212 (82%)
 Strand = Plus / Minus

                                                                       
Query: 35  gtggatccgcgatatcaaagaataccatattggtctccactgaagctaaatcaactgtaa 94
           |||||||| ||||||| ||||| |||||||||||||| || |||| | |||| || || |
Sbjct: 970 gtggatccacgatatcgaagaacaccatattggtctcgaccgaagatgaatccaccgtga 911

                                                                       
Query: 95  actgtttaattttcttcagtccatctgctaaaactttggccttcctatggtcatcggcga 154
           |||||||||||||| | || || | ||  ||  |||| |||||||| || ||||| || |
Sbjct: 910 actgtttaattttcgtgaggccttatggcaaggctttagccttcctgtgatcatccgcaa 851

                                                                       
Query: 155 gcttgcccacggtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcc 214
           |||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| ||||| |
Sbjct: 850 gctttcccacggtgtcacgaacagcaacataagcagcggcacaaagaactccaacctgtc 791

                                           
Query: 215 tcattccaccacctagtgtcttcctaagaatt 246
           |||| ||||| | ||| |||||||||||||||
Sbjct: 790 tcatcccaccgcntagggtcttcctaagaatt 759



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                           
Query: 166     gtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcctcattccacca 225
               |||||||||||  ||||||||||||| || || |||| ||| |  |||||||||||||||
Sbjct: 2021359 gtgtcgcgaacaacaacataggcagccgcgcaaagaaatcccatttgcctcattccacca 2021300

                                           
Query: 226     cctagtgtcttcctaagaattttggcct 253
               ||||||||||||||||||||||| ||||
Sbjct: 2021299 cctagtgtcttcctaagaattttagcct 2021272



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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                          
Query: 166    gtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcctcattccacca 225
              |||||||||||  ||||||||||||| || || |||| ||| |  |||||||||||||||
Sbjct: 150139 gtgtcgcgaacaacaacataggcagccgcgcaaagaaatcccatttgcctcattccacca 150080

                                          
Query: 226    cctagtgtcttcctaagaattttggcct 253
              ||||||||||||||||||||||| ||||
Sbjct: 150079 cctagtgtcttcctaagaattttagcct 150052



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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                         
Query: 166   gtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcctcattccacca 225
             |||||||||||  ||||||||||||| || || |||| ||| |  |||||||||||||||
Sbjct: 42221 gtgtcgcgaacaacaacataggcagccgcgcaaagaaatcccatttgcctcattccacca 42162

                                         
Query: 226   cctagtgtcttcctaagaattttggcct 253
             ||||||||||||||||||||||| ||||
Sbjct: 42161 cctagtgtcttcctaagaattttagcct 42134



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>gb|AY111020.1| Zea mays CL189_1 mRNA sequence
          Length = 1346

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 125/152 (82%)
 Strand = Plus / Minus

                                                                       
Query: 13  cacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccatattggtctcc 72
           ||||| |||| || || |||||||| |||| |||| || |||||||||||||||||||  
Sbjct: 818 cacagcttgttagatgatatgcgtgaatccacgatgtccaagaataccatattggtctgg 759

                                                                       
Query: 73  actgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgctaaaactttg 132
           ||||| ||| |||| ||| | |||||||  ||||| |||||||| ||||| ||| |||| 
Sbjct: 758 actgatgctgaatccactctgaactgttcgattttattcagtccgtctgccaaagcttta 699

                                           
Query: 133 gccttcctatggtcatcggcgagcttgcccac 164
           ||||| || |||||||| || ||||| |||||
Sbjct: 698 gcctttctgtggtcatctgcaagctttcccac 667



 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 199 agaattcctacctgcctcattccaccacctagtgtcttcctaagaattttggcctt 254
           |||| ||| ||||||||||||||||||||||| |||||||  ||||||||||||||
Sbjct: 632 agaactccaacctgcctcattccaccacctagggtcttccggagaattttggcctt 577



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>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
              precursor -orf2, putative Fourf gag/pol protein, putative
              NADP-dependent malic enzyme, putative argonaute protein,
              putative pinhead protein, putative pol protein, putative
              gag protein, putative TNP2, r1-B73 proteins, putative
              genetic modifier, putative S-receptor kinase, putative
              aldose reductase-related protein, putative glutathione
              peroxidase, putative glycerol 3-phosphate permease,
              putative response regulator, and putative 4-coumarate-CoA
              ligase-like protein genes, complete cds
          Length = 290350

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 191    cagcacagagaattcctacctgcctcattccaccacctag 230
              ||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 100444 cagcacacagaactccaacctgcctcattccaccacctag 100483



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>gb|AC118750.13| Mus musculus chromosome 10, clone RP24-198J23, complete sequence
          Length = 174226

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 178    gcaacataggcagcagcacag 198
              |||||||||||||||||||||
Sbjct: 129066 gcaacataggcagcagcacag 129046



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>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence
          Length = 274518

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    taaaactttggccttcctat 142
              ||||||||||||||||||||
Sbjct: 142929 taaaactttggccttcctat 142910



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>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence
          Length = 187246

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    taaaactttggccttcctat 142
              ||||||||||||||||||||
Sbjct: 152230 taaaactttggccttcctat 152211



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>gb|AC149304.11| Medicago truncatula clone mth2-76g4, complete sequence
          Length = 114831

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   cataggcagcagcacagaga 201
             ||||||||||||||||||||
Sbjct: 13023 cataggcagcagcacagaga 13042



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>emb|AL596178.4| Human DNA sequence from clone RP11-236L13 on chromosome 1, complete
            sequence
          Length = 79923

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   ctgtttaattttcttcagtc 115
            ||||||||||||||||||||
Sbjct: 2177 ctgtttaattttcttcagtc 2196



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>emb|BX276181.15| Zebrafish DNA sequence from clone CH211-247O20 in linkage group 5,
             complete sequence
          Length = 154012

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    gtctccactgaagctaaatc 86
             ||||||||||||||||||||
Sbjct: 54747 gtctccactgaagctaaatc 54728



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>dbj|AB183488.1| Oryzias latipes DNA, MHC class I region
          Length = 540982

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 213    cctcattccaccacctagtgtctt 236
              ||||||||||||||| ||||||||
Sbjct: 284194 cctcattccaccaccaagtgtctt 284171



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>gb|AC010134.5| Homo sapiens BAC clone RP11-127K18 from 2, complete sequence
          Length = 202943

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    gcagcagcacagagaattcc 206
              ||||||||||||||||||||
Sbjct: 193450 gcagcagcacagagaattcc 193431



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>emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chromosome 11, complete
             sequence
          Length = 197852

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   taggcagcagcacagagaat 203
             ||||||||||||||||||||
Sbjct: 16463 taggcagcagcacagagaat 16482



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>dbj|AB021490.2| Oryzias latipes gene for membrane guanylyl cyclase OlGC1, complete cds
          Length = 96891

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 213   cctcattccaccacctagtgtctt 236
             ||||||||||||||| ||||||||
Sbjct: 47884 cctcattccaccaccaagtgtctt 47861


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,333,107
Number of Sequences: 3902068
Number of extensions: 2333107
Number of successful extensions: 50446
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50389
Number of HSP's gapped (non-prelim): 57
length of query: 254
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 232
effective length of database: 17,147,199,772
effective search space: 3978150347104
effective search space used: 3978150347104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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