Clone Name | rbasd13m08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473181.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 283 bits (143), Expect = 1e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 4 aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccata 63 ||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||||| Sbjct: 926 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaataccata 867 Query: 64 ttggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgct 123 |||||||||||||||| | ||||||| |||| || || ||||||||||| ||||||||| Sbjct: 866 ttggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagaccatctgct 807 Query: 124 aaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaaca 183 |||||||| ||| | ||||||||||| || || || || || ||||||||||| |||||| Sbjct: 806 aaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacggcaaca 747 Query: 184 taggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcctaaga 243 |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 746 taggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcctaaga 687 Query: 244 attttggcctt 254 ||||| ||||| Sbjct: 686 attttagcctt 676
>dbj|AK099280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133K04, full insert sequence Length = 1381 Score = 283 bits (143), Expect = 1e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 4 aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccata 63 ||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||||| Sbjct: 1059 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaataccata 1000 Query: 64 ttggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgct 123 |||||||||||||||| | ||||||| |||| || || ||||||||||| ||||||||| Sbjct: 999 ttggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagaccatctgct 940 Query: 124 aaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaaca 183 |||||||| ||| | ||||||||||| || || || || || ||||||||||| |||||| Sbjct: 939 aaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacggcaaca 880 Query: 184 taggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcctaaga 243 |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 879 taggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcctaaga 820 Query: 244 attttggcctt 254 ||||| ||||| Sbjct: 819 attttagcctt 809
>dbj|AK059652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C08, full insert sequence Length = 1389 Score = 283 bits (143), Expect = 1e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 4 aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccata 63 ||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||||| Sbjct: 1061 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaataccata 1002 Query: 64 ttggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgct 123 |||||||||||||||| | ||||||| |||| || || ||||||||||| ||||||||| Sbjct: 1001 ttggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagaccatctgct 942 Query: 124 aaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaaca 183 |||||||| ||| | ||||||||||| || || || || || ||||||||||| |||||| Sbjct: 941 aaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacggcaaca 882 Query: 184 taggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcctaaga 243 |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 881 taggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcctaaga 822 Query: 244 attttggcctt 254 ||||| ||||| Sbjct: 821 attttagcctt 811
>gb|BT018937.1| Zea mays clone Contig81.F mRNA sequence Length = 1352 Score = 186 bits (94), Expect = 2e-44 Identities = 214/254 (84%) Strand = Plus / Minus Query: 1 tccaggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60 |||| |||||| |||||||||||||||| ||| | ||||||| || |||||||||||| Sbjct: 1022 tccaagacttggcacagtttgtcaggtgatattcttggatccatgacctcaaagaatacc 963 Query: 61 atattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtccatct 120 ||||||||||| || |||||| | || ||||||| ||| | |||||||||||||| ||| Sbjct: 962 atattggtctcgaccgaagctgagtccactgtaatctgctcgattttcttcagtccctct 903 Query: 121 gctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgca 180 || ||| |||| ||||||||||||||||| || ||||| ||||| ||||| |||| ||| Sbjct: 902 gccaaagctttagccttcctatggtcatccgcaagctttcccacagtgtcacgaatggca 843 Query: 181 acataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttccta 240 |||| ||||||||||| |||| ||| ||||| ||||||||||| ||||| ||||||| Sbjct: 842 acatgagcagcagcacaaagaactcccacctgtctcattccaccgcctagggtcttccgg 783 Query: 241 agaattttggcctt 254 |||||| ||||||| Sbjct: 782 agaattctggcctt 769
>gb|BT017119.1| Zea mays clone EL01N0364D05.c mRNA sequence Length = 1417 Score = 182 bits (92), Expect = 4e-43 Identities = 185/216 (85%) Strand = Plus / Plus Query: 31 atgcgtggatccgcgatatcaaagaataccatattggtctccactgaagctaaatcaact 90 |||||||||||| ||||||||||||| |||||||||||||| || |||| | |||| || Sbjct: 353 atgcgtggatccacgatatcaaagaacaccatattggtctcgaccgaagatgaatccacc 412 Query: 91 gtaaactgtttaattttcttcagtccatctgctaaaactttggccttcctatggtcatcg 150 || |||||||||||||| ||||| || ||||| || |||| |||||||| || ||||| Sbjct: 413 gtgaactgtttaattttgttcaggccctctgccaaggctttagccttcctgtgatcatcc 472 Query: 151 gcgagcttgcccacggtgtcgcgaaccgcaacataggcagcagcacagagaattcctacc 210 || ||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| ||| Sbjct: 473 gcaagctttcccacggtgtcacgaacagcaacataagcagcggcacaaagaactccaacc 532 Query: 211 tgcctcattccaccacctagtgtcttcctaagaatt 246 |||||||| ||||| ||||| ||||||||||||||| Sbjct: 533 tgcctcatcccaccgcctagggtcttcctaagaatt 568
>gb|BT016559.1| Zea mays clone Contig392 mRNA sequence Length = 1322 Score = 155 bits (78), Expect = 8e-35 Identities = 201/242 (83%) Strand = Plus / Plus Query: 13 cacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccatattggtctcc 72 ||||| |||| || || |||||||| |||| | || || ||||||||||||||||||| Sbjct: 212 cacagcttgttagatgatatgcgtgaatccacaatgtccaagaataccatattggtctgg 271 Query: 73 actgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgctaaaactttg 132 ||||| ||| |||| ||| | ||||||| ||||| |||||||| ||||| ||| |||| Sbjct: 272 actgatgctgaatccactctgaactgttcgattttattcagtccgtctgccaaagcttta 331 Query: 133 gccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccgcaacataggcagca 192 ||||| || |||||||| || ||||| ||||| |||| |||| ||||||| |||||| Sbjct: 332 gcctttctgtggtcatctgcaagctttcccacattgtcatgaacggcaacatgagcagca 391 Query: 193 gcacagagaattcctacctgcctcattccaccacctagtgtcttcctaagaattttggcc 252 |||||||||| ||| ||||| ||||||||||||||||| ||||||| |||||||||||| Sbjct: 392 gcacagagaactccaacctgtctcattccaccacctagggtcttccggagaattttggcc 451 Query: 253 tt 254 || Sbjct: 452 tt 453
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 149 bits (75), Expect = 5e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 119 ctgctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccg 178 ||||||||||||| ||| | ||||||||||| || || || || || ||||||||||| | Sbjct: 18657 ctgctaaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacgg 18716 Query: 179 caacataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcc 238 ||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||| Sbjct: 18717 caacataggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcc 18776 Query: 239 taagaattttggcct 253 |||||||||| |||| Sbjct: 18777 taagaattttagcct 18791 Score = 81.8 bits (41), Expect = 1e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 4 aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60 ||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||| Sbjct: 18355 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaatacc 18411 Score = 61.9 bits (31), Expect = 9e-07 Identities = 55/63 (87%) Strand = Plus / Plus Query: 58 accatattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtcca 117 |||||||||||||||||||||| | ||||||| |||| || || ||||||||||| ||| Sbjct: 18502 accatattggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagacca 18561 Query: 118 tct 120 ||| Sbjct: 18562 tct 18564
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 149 bits (75), Expect = 5e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 119 ctgctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccg 178 ||||||||||||| ||| | ||||||||||| || || || || || ||||||||||| | Sbjct: 25801247 ctgctaaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacgg 25801306 Query: 179 caacataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcc 238 ||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||| Sbjct: 25801307 caacataggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcc 25801366 Query: 239 taagaattttggcct 253 |||||||||| |||| Sbjct: 25801367 taagaattttagcct 25801381 Score = 81.8 bits (41), Expect = 1e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 4 aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60 ||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||| Sbjct: 25800945 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaatacc 25801001 Score = 61.9 bits (31), Expect = 9e-07 Identities = 55/63 (87%) Strand = Plus / Plus Query: 58 accatattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtcca 117 |||||||||||||||||||||| | ||||||| |||| || || ||||||||||| ||| Sbjct: 25801092 accatattggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagacca 25801151 Query: 118 tct 120 ||| Sbjct: 25801152 tct 25801154
>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01, complete sequence Length = 127712 Score = 149 bits (75), Expect = 5e-33 Identities = 120/135 (88%) Strand = Plus / Plus Query: 119 ctgctaaaactttggccttcctatggtcatcggcgagcttgcccacggtgtcgcgaaccg 178 ||||||||||||| ||| | ||||||||||| || || || || || ||||||||||| | Sbjct: 124173 ctgctaaaactttagcccttctatggtcatcagcaagttttcctacagtgtcgcgaacgg 124232 Query: 179 caacataggcagcagcacagagaattcctacctgcctcattccaccacctagtgtcttcc 238 ||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||| Sbjct: 124233 caacataggcagccgcacaaagaattcccacttgcctcattccaccacctagtgtcttcc 124292 Query: 239 taagaattttggcct 253 |||||||||| |||| Sbjct: 124293 taagaattttagcct 124307 Score = 81.8 bits (41), Expect = 1e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 4 aggacttgacacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaatacc 60 ||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||| Sbjct: 123871 aggacttgacacagtttgtcaggtgatatgcgtgaatccacaatatcaaagaatacc 123927 Score = 61.9 bits (31), Expect = 9e-07 Identities = 55/63 (87%) Strand = Plus / Plus Query: 58 accatattggtctccactgaagctaaatcaactgtaaactgtttaattttcttcagtcca 117 |||||||||||||||||||||| | ||||||| |||| || || ||||||||||| ||| Sbjct: 124018 accatattggtctccactgaagttgtatcaactctaaaatgcttgattttcttcagacca 124077 Query: 118 tct 120 ||| Sbjct: 124078 tct 124080
>gb|BT018736.1| Zea mays clone EL01N0520D02.d mRNA sequence Length = 1773 Score = 129 bits (65), Expect = 5e-27 Identities = 175/212 (82%) Strand = Plus / Minus Query: 35 gtggatccgcgatatcaaagaataccatattggtctccactgaagctaaatcaactgtaa 94 |||||||| ||||||| ||||| |||||||||||||| || |||| | |||| || || | Sbjct: 970 gtggatccacgatatcgaagaacaccatattggtctcgaccgaagatgaatccaccgtga 911 Query: 95 actgtttaattttcttcagtccatctgctaaaactttggccttcctatggtcatcggcga 154 |||||||||||||| | || || | || || |||| |||||||| || ||||| || | Sbjct: 910 actgtttaattttcgtgaggccttatggcaaggctttagccttcctgtgatcatccgcaa 851 Query: 155 gcttgcccacggtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcc 214 |||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| ||||| | Sbjct: 850 gctttcccacggtgtcacgaacagcaacataagcagcggcacaaagaactccaacctgtc 791 Query: 215 tcattccaccacctagtgtcttcctaagaatt 246 |||| ||||| | ||| ||||||||||||||| Sbjct: 790 tcatcccaccgcntagggtcttcctaagaatt 759
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 95.6 bits (48), Expect = 6e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 166 gtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcctcattccacca 225 ||||||||||| ||||||||||||| || || |||| ||| | ||||||||||||||| Sbjct: 2021359 gtgtcgcgaacaacaacataggcagccgcgcaaagaaatcccatttgcctcattccacca 2021300 Query: 226 cctagtgtcttcctaagaattttggcct 253 ||||||||||||||||||||||| |||| Sbjct: 2021299 cctagtgtcttcctaagaattttagcct 2021272
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 95.6 bits (48), Expect = 6e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 166 gtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcctcattccacca 225 ||||||||||| ||||||||||||| || || |||| ||| | ||||||||||||||| Sbjct: 150139 gtgtcgcgaacaacaacataggcagccgcgcaaagaaatcccatttgcctcattccacca 150080 Query: 226 cctagtgtcttcctaagaattttggcct 253 ||||||||||||||||||||||| |||| Sbjct: 150079 cctagtgtcttcctaagaattttagcct 150052
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 95.6 bits (48), Expect = 6e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 166 gtgtcgcgaaccgcaacataggcagcagcacagagaattcctacctgcctcattccacca 225 ||||||||||| ||||||||||||| || || |||| ||| | ||||||||||||||| Sbjct: 42221 gtgtcgcgaacaacaacataggcagccgcgcaaagaaatcccatttgcctcattccacca 42162 Query: 226 cctagtgtcttcctaagaattttggcct 253 ||||||||||||||||||||||| |||| Sbjct: 42161 cctagtgtcttcctaagaattttagcct 42134
>gb|AY111020.1| Zea mays CL189_1 mRNA sequence Length = 1346 Score = 87.7 bits (44), Expect = 2e-14 Identities = 125/152 (82%) Strand = Plus / Minus Query: 13 cacagtttgtcaggtgttatgcgtggatccgcgatatcaaagaataccatattggtctcc 72 ||||| |||| || || |||||||| |||| |||| || ||||||||||||||||||| Sbjct: 818 cacagcttgttagatgatatgcgtgaatccacgatgtccaagaataccatattggtctgg 759 Query: 73 actgaagctaaatcaactgtaaactgtttaattttcttcagtccatctgctaaaactttg 132 ||||| ||| |||| ||| | ||||||| ||||| |||||||| ||||| ||| |||| Sbjct: 758 actgatgctgaatccactctgaactgttcgattttattcagtccgtctgccaaagcttta 699 Query: 133 gccttcctatggtcatcggcgagcttgcccac 164 ||||| || |||||||| || ||||| ||||| Sbjct: 698 gcctttctgtggtcatctgcaagctttcccac 667 Score = 71.9 bits (36), Expect = 9e-10 Identities = 51/56 (91%) Strand = Plus / Minus Query: 199 agaattcctacctgcctcattccaccacctagtgtcttcctaagaattttggcctt 254 |||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 632 agaactccaacctgcctcattccaccacctagggtcttccggagaattttggcctt 577
>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol precursor -orf2, putative Fourf gag/pol protein, putative NADP-dependent malic enzyme, putative argonaute protein, putative pinhead protein, putative pol protein, putative gag protein, putative TNP2, r1-B73 proteins, putative genetic modifier, putative S-receptor kinase, putative aldose reductase-related protein, putative glutathione peroxidase, putative glycerol 3-phosphate permease, putative response regulator, and putative 4-coumarate-CoA ligase-like protein genes, complete cds Length = 290350 Score = 56.0 bits (28), Expect = 6e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 191 cagcacagagaattcctacctgcctcattccaccacctag 230 ||||||| |||| ||| ||||||||||||||||||||||| Sbjct: 100444 cagcacacagaactccaacctgcctcattccaccacctag 100483
>gb|AC118750.13| Mus musculus chromosome 10, clone RP24-198J23, complete sequence Length = 174226 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gcaacataggcagcagcacag 198 ||||||||||||||||||||| Sbjct: 129066 gcaacataggcagcagcacag 129046
>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence Length = 274518 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 taaaactttggccttcctat 142 |||||||||||||||||||| Sbjct: 142929 taaaactttggccttcctat 142910
>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence Length = 187246 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 taaaactttggccttcctat 142 |||||||||||||||||||| Sbjct: 152230 taaaactttggccttcctat 152211
>gb|AC149304.11| Medicago truncatula clone mth2-76g4, complete sequence Length = 114831 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cataggcagcagcacagaga 201 |||||||||||||||||||| Sbjct: 13023 cataggcagcagcacagaga 13042
>emb|AL596178.4| Human DNA sequence from clone RP11-236L13 on chromosome 1, complete sequence Length = 79923 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ctgtttaattttcttcagtc 115 |||||||||||||||||||| Sbjct: 2177 ctgtttaattttcttcagtc 2196
>emb|BX276181.15| Zebrafish DNA sequence from clone CH211-247O20 in linkage group 5, complete sequence Length = 154012 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gtctccactgaagctaaatc 86 |||||||||||||||||||| Sbjct: 54747 gtctccactgaagctaaatc 54728
>dbj|AB183488.1| Oryzias latipes DNA, MHC class I region Length = 540982 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 cctcattccaccacctagtgtctt 236 ||||||||||||||| |||||||| Sbjct: 284194 cctcattccaccaccaagtgtctt 284171
>gb|AC010134.5| Homo sapiens BAC clone RP11-127K18 from 2, complete sequence Length = 202943 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcagcagcacagagaattcc 206 |||||||||||||||||||| Sbjct: 193450 gcagcagcacagagaattcc 193431
>emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chromosome 11, complete sequence Length = 197852 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 taggcagcagcacagagaat 203 |||||||||||||||||||| Sbjct: 16463 taggcagcagcacagagaat 16482
>dbj|AB021490.2| Oryzias latipes gene for membrane guanylyl cyclase OlGC1, complete cds Length = 96891 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 cctcattccaccacctagtgtctt 236 ||||||||||||||| |||||||| Sbjct: 47884 cctcattccaccaccaagtgtctt 47861 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,333,107 Number of Sequences: 3902068 Number of extensions: 2333107 Number of successful extensions: 50446 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50389 Number of HSP's gapped (non-prelim): 57 length of query: 254 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 232 effective length of database: 17,147,199,772 effective search space: 3978150347104 effective search space used: 3978150347104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)