Clone Name | rbasd13m07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197138.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0051D19.4), mRNA Length = 1501 Score = 129 bits (65), Expect = 6e-27 Identities = 113/129 (87%) Strand = Plus / Minus Query: 189 agggggtccgtagtactttgaaaaatatttggcaacccacggcgcaagctgagtgttctc 248 |||||||| ||||||||| |||||||||||||||||||| || || |||||||| ||||| Sbjct: 1215 agggggtcagtagtacttggaaaaatatttggcaacccatggagcgagctgagtattctc 1156 Query: 249 aggctcccttctgttctggttgtaatagtcagaccatatagccgggtatatctcagggtt 308 || ||||||||||||| |||||| ||||||||||||| ||| || ||||| ||||| || Sbjct: 1155 tggttcccttctgttcttgttgtagtagtcagaccatagagctggatatatttcaggatt 1096 Query: 309 gaagccatc 317 ||| ||||| Sbjct: 1095 gaaaccatc 1087
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 129 bits (65), Expect = 6e-27 Identities = 113/129 (87%) Strand = Plus / Minus Query: 189 agggggtccgtagtactttgaaaaatatttggcaacccacggcgcaagctgagtgttctc 248 |||||||| ||||||||| |||||||||||||||||||| || || |||||||| ||||| Sbjct: 24854 agggggtcagtagtacttggaaaaatatttggcaacccatggagcgagctgagtattctc 24795 Query: 249 aggctcccttctgttctggttgtaatagtcagaccatatagccgggtatatctcagggtt 308 || ||||||||||||| |||||| ||||||||||||| ||| || ||||| ||||| || Sbjct: 24794 tggttcccttctgttcttgttgtagtagtcagaccatagagctggatatatttcaggatt 24735 Query: 309 gaagccatc 317 ||| ||||| Sbjct: 24734 gaaaccatc 24726
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 129 bits (65), Expect = 6e-27 Identities = 113/129 (87%) Strand = Plus / Plus Query: 189 agggggtccgtagtactttgaaaaatatttggcaacccacggcgcaagctgagtgttctc 248 |||||||| ||||||||| |||||||||||||||||||| || || |||||||| ||||| Sbjct: 18188274 agggggtcagtagtacttggaaaaatatttggcaacccatggagcgagctgagtattctc 18188333 Query: 249 aggctcccttctgttctggttgtaatagtcagaccatatagccgggtatatctcagggtt 308 || ||||||||||||| |||||| ||||||||||||| ||| || ||||| ||||| || Sbjct: 18188334 tggttcccttctgttcttgttgtagtagtcagaccatagagctggatatatttcaggatt 18188393 Query: 309 gaagccatc 317 ||| ||||| Sbjct: 18188394 gaaaccatc 18188402
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 129 bits (65), Expect = 6e-27 Identities = 113/129 (87%) Strand = Plus / Plus Query: 189 agggggtccgtagtactttgaaaaatatttggcaacccacggcgcaagctgagtgttctc 248 |||||||| ||||||||| |||||||||||||||||||| || || |||||||| ||||| Sbjct: 18197527 agggggtcagtagtacttggaaaaatatttggcaacccatggagcgagctgagtattctc 18197586 Query: 249 aggctcccttctgttctggttgtaatagtcagaccatatagccgggtatatctcagggtt 308 || ||||||||||||| |||||| ||||||||||||| ||| || ||||| ||||| || Sbjct: 18197587 tggttcccttctgttcttgttgtagtagtcagaccatagagctggatatatttcaggatt 18197646 Query: 309 gaagccatc 317 ||| ||||| Sbjct: 18197647 gaaaccatc 18197655
>emb|Z68008.1|CER08B4 Caenorhabditis elegans Cosmid R08B4, complete sequence Length = 25495 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 actttgaaaaatatttggcaa 223 ||||||||||||||||||||| Sbjct: 20268 actttgaaaaatatttggcaa 20248
>gb|AC154045.1| Drosophila melanogaster clone BACR34K23, complete sequence Length = 163868 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 atatacacaaaacggcaacc 340 |||||||||||||||||||| Sbjct: 156072 atatacacaaaacggcaacc 156091
>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence Length = 357655 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gatatacacaaaacggcaac 339 |||||||||||||||||||| Sbjct: 190244 gatatacacaaaacggcaac 190263
>emb|AL583862.35| Human DNA sequence from clone RP11-506B15 on chromosome 1 Contains the 3' end of the gene for a novel protein (LOC149469), three novel genes (FLJ00408), gene KIAA0467 (FLJ45025, FLJ23425), the gene for a novel protein (HT036) (FLJ38925), the 5' end of the PTPRF gene for protein tyrosine phosphatase receptor type F and a CpG island, complete sequence Length = 167444 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctgagtgttctcaggctcc 255 |||||||||||||||||||| Sbjct: 149464 gctgagtgttctcaggctcc 149483
>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains pseudogene similar to part of a novel gene (KIAA1688), a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 (SLC25A6) (ANT3) pseudogene and a CpG island, complete sequence Length = 169550 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tctcagggttgaagccatca 318 |||||||||||||||||||| Sbjct: 122078 tctcagggttgaagccatca 122097
>dbj|AK149040.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120478H08 product:vesicle-associated membrane protein, associated protein A, full insert sequence Length = 2980 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ccttctgttctggttgtaat 274 |||||||||||||||||||| Sbjct: 549 ccttctgttctggttgtaat 568
>gb|AC099555.4| Papio anubis clone RP41-390O6, complete sequence Length = 180643 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 actttgaaaaatatttggca 222 |||||||||||||||||||| Sbjct: 154012 actttgaaaaatatttggca 153993
>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete sequence Length = 491220 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 atatacacaaaacggcaacc 340 |||||||||||||||||||| Sbjct: 92270 atatacacaaaacggcaacc 92289
>gb|U20734.1|HSU20734 Human transcription factor junB (junB) gene, 5' region and complete cds Length = 8628 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tttggcaaacacagggggtc 196 |||||||||||||||||||| Sbjct: 2057 tttggcaaacacagggggtc 2038 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,846,672 Number of Sequences: 3902068 Number of extensions: 2846672 Number of successful extensions: 75564 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75523 Number of HSP's gapped (non-prelim): 41 length of query: 349 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 327 effective length of database: 17,147,199,772 effective search space: 5607134325444 effective search space used: 5607134325444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)