>GAG_SMRVH (P21411) Gag polyprotein [Contains: Core protein p19; Core protein|
           p16; Probable core protein p35; Probable core protein
           p10]
          Length = 739

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 224 TVGNDEDQDEGRSSSEPKGEETCEEQEPTRDLSHPTLKGLPVSRLQNSV 78
           T+  +E+ D G S SE   EE+ E  EPT   S+  L    + +++ +V
Sbjct: 342 TIPEEEEADSGESDSEDDEEESSEPTEPTYTHSYKRLNLKTIEKIKTAV 390

>YA7D_SCHPO (Q09766) Hypothetical protein C24H6.13 in chromosome I|
          Length = 871

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
 Frame = -2

Query: 554  DSGGLYLPIAHNTVIFSLVLTQIICLGVFGLKKSPVAAGFAIPPIFFILSFNQYCRTRFL 375
            D+ G   P A   V   L L ++  +G+F L K+  A       + F ++ + Y + +FL
Sbjct: 619  DAKGRNYPRALFQVFVGLYLAEVCLIGLFVLAKNWGATVLEAVFLGFTVACHLYFKYKFL 678

Query: 374  PLFKTFPTQDLIDLDREDVRSGRMEHIHHGLRSAYRQFPDTEDIKMEKI-LTVGNDEDQD 198
            PL    P   +  +         M+     +++  R +P+     +EK+  + G+DE  +
Sbjct: 679  PLMDAVPISAIESVSERPEIKYPMDLGTSEMKNVGRAYPEI----LEKLSSSSGSDEFLE 734

Query: 197  EGRSSSEPKGEETCEEQE 144
                +SE   E+  ++ E
Sbjct: 735  TSSRTSENTKEKIDKDDE 752

>SCARL_ARATH (Q5XPK0) Scar-like domain-containing protein|
          Length = 2028

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 209 EDQDEGRSSSEPKGEETCEEQEPTRDLSHPTLKGLPVSRLQNSVRSITVICTTEKRSDN 33
           E++ E +S  E + +E  + +      S   + G+P  +L++    I+  C+ +  SDN
Sbjct: 430 ENEGEDKSEQESEADEFVDARNTIESESESDIDGVPKPKLEHYFGDISTYCSEDANSDN 488

>DPOLA_TRYBB (P27727) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA|
            polymerase I)
          Length = 1339

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
 Frame = -2

Query: 464  LKKSPVAAGFAIPPIFF------ILSFNQYCRTRFLPLFKTFPTQDLIDLDREDVRSGRM 303
            L K  + +  A+ PI        +LSFN       +PL K   T    +L    +   R 
Sbjct: 628  LVKDSMMSSEALCPILLQLLNCAVLSFNVASFLDVIPLTKRL-TLLAGNLWSRTLYGARS 686

Query: 302  EHIHHGLRSAYRQFPDTEDIKMEKILTVGNDEDQDEGRSSSEPKGEETCEEQEPTRDLSH 123
            E I + L  A+         K ++ L  G ++D DEG+  ++ +G       EP   L  
Sbjct: 687  ERIEYLLLHAFHNLKFVTPDKKKRDLKRGREDDDDEGKRKTKYQGGMVL---EPKSGLYS 743

Query: 122  PTLKGLPVSRLQNS-VRSITVICTTEKRSDNTALA 21
              +  L  + L  S ++   V  TT  R +NT  A
Sbjct: 744  EYILLLDFNSLYPSLIQEFNVCYTTIDRDENTVSA 778

>NOP14_YARLI (Q6C2F4) Probable nucleolar complex protein 14|
          Length = 832

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 257 DTEDIKMEKILTVGNDEDQDE-GRSSSEPKGEETCEEQEPTRDLSHPTL 114
           D ED+++ ++     DED+DE G  S +  GEE   + EP    S  TL
Sbjct: 379 DDEDVEIHEV-----DEDEDESGDKSGDESGEEETTKSEPASKSSSSTL 422

>ZN297_MOUSE (Q9Z0G7) Zinc finger protein 297 (BING1 protein)|
          Length = 638

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -2

Query: 278 SAYRQFPDTEDIKMEK--ILTVGNDEDQDEGRSSSEPKG--EETCEEQEPTRDLSHPTLK 111
           S   Q PD ED + E+  +LT  +DED++ G  S  P G   E        R L+ P  K
Sbjct: 312 SLVHQDPDLEDEEEEEDLVLTCEDDEDEEMGGGSGVPAGGEPEATLSISDVRTLTEPADK 371

Query: 110 G 108
           G
Sbjct: 372 G 372

>STAG3_RAT (Q99M76) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3)|
           (SCC3 homolog 3)
          Length = 1256

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 17/132 (12%)
 Frame = -2

Query: 392 CRTRFLPLFKTFPTQDLID----LDREDVRSGRMEHIHHGLRSAYRQFPDTEDIKMEKIL 225
           C+ ++  LF  FP  DLI     L    VR+ R    H    +A +       + ++  L
Sbjct: 215 CQCQYSLLFDGFPMDDLISLLIGLSDSQVRAFR----HTSTLAAMKLMTSLVKVALQLSL 270

Query: 224 TVGNDEDQDEGRSSSEP-------------KGEETCEEQEPTRDLSHPTLKGLPVSRLQN 84
              N++ Q E   +  P             K +E  E QE    + +   +G+ V R ++
Sbjct: 271 HKDNNQRQYEAERNKGPEQRAPERLESLLEKRKEFQENQEEIEGMMNAIFRGVFVHRYRD 330

Query: 83  SVRSITVICTTE 48
            +  I  +C  E
Sbjct: 331 ILPEIRAVCIEE 342

>NEK11_MACFA (Q8WNU8) Serine/threonine-protein kinase Nek11 (EC 2.7.11.1)|
           (NimA-related protein kinase 11) (Never in mitosis
           A-related kinase 11)
          Length = 637

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 248 DIKMEKILTVGNDE--DQDEGRSSSEPKGEETCEEQEPTRDLSHPTLKGL 105
           D+  EK   +G +E  +Q EGR S  P+ E+    Q+   +   PTL+ L
Sbjct: 389 DVLHEKTHLIGMEEKEEQPEGRPSCSPQDEDEERWQDREEEFDEPTLENL 438

>CXA12_RAT (Q80XF7) Gap junction alpha-12 protein (Connexin-47) (Cx47)|
          Length = 440

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -2

Query: 263 FPDTEDI-KMEKILTVGNDEDQDEGRSSSEPKGEETCEEQEPTRDLS 126
           +PDT D+ + E IL +  DED++ G  + E  GE+T  E+E T D++
Sbjct: 135 WPDTTDLGEAEPILALEEDEDEEPG--APEGPGEDT--EEERTEDVA 177

>ATG3_XENTR (Q5I0S6) Autophagy-related protein 3 (APG3-like)|
          Length = 312

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
 Frame = -2

Query: 398 QYCRTRFLPLFKTFPTQDLID-----LDREDVRSGRMEHIHH---GLRSAYRQFP-DTED 246
           Q+  T+ +P +K     +  D     ++ +D   G ++  HH   G+  A ++   +T+D
Sbjct: 72  QFLMTKNVPCYKRCKQMEYSDEQEAIIEEDDGDGGWVDTFHHSLTGVTEAVKEITLETQD 131

Query: 245 I-KMEKILTVGNDEDQDEGRSSSEPKGEET 159
             K    + V +D+D DEG ++     EE+
Sbjct: 132 CGKTTSNIAVDDDDDDDEGEAADMEDYEES 161

>DEK_RAT (Q6AXS3) Protein DEK|
          Length = 378

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = -2

Query: 254 TEDIKMEKILTVGNDEDQDEGRS---SSEPKGEETCEEQEPTRDLSHPTLKGLPVSRLQN 84
           ++  K  +IL+  +  D+DE ++   SSE + +E+ EEQ P +       K    ++ + 
Sbjct: 219 SKQTKCPEILSDESSSDEDEKKNKDESSEDEEKESEEEQPPKKTSKKEKAKQKATTKSKK 278

Query: 83  SVRSITV---ICTTEKRSDNTA 27
           SV+S  V     +T K++ N++
Sbjct: 279 SVKSANVKKADSSTTKKNQNSS 300

>KI21B_MOUSE (Q9QXL1) Kinesin family member 21B (Kinesin-like protein KIF6)|
          Length = 1668

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = -2

Query: 350 QDLIDLDREDVRSGRMEHIHHGLRSAYRQFPDTEDIKMEKILTVGNDE--DQDEGRSSSE 177
           QDL  L +++VR  R               P+ E  K    L   N E  D++E     E
Sbjct: 547 QDLERLKKKEVRQRRKS-------------PEKEAFKKRAKLQAENSEETDENEAEEEEE 593

Query: 176 PKGEETCEEQEPTRD 132
            + E  CEE+E   D
Sbjct: 594 ERDESGCEEEEGRED 608

>NEK11_HUMAN (Q8NG66) Serine/threonine-protein kinase Nek11 (EC 2.7.11.1)|
           (NimA-related protein kinase 11) (Never in mitosis
           A-related kinase 11)
          Length = 645

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 248 DIKMEKILTVGNDE--DQDEGRSSSEPKGEETCEEQEPTRDLSHPTLKGLPVSR 93
           D+  EK    G +E  +Q EGR S  P+ E+    Q    +   PTL+ LP S+
Sbjct: 389 DVLHEKTHLKGMEEKEEQPEGRLSCSPQDEDEERWQGREEESDEPTLENLPESQ 442

>ZN297_HUMAN (O15209) Zinc finger protein 297 (BING1 protein) (Zinc finger and|
           BTB domain-containing protein 22A)
          Length = 634

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -2

Query: 266 QFPDTEDIKMEK--ILTVGNDEDQDEGRSSSEP--KGEETCEEQEPTRDLSHPTLKG 108
           Q PD E+ + E+  +LT  +DED++ G SS  P   G E        R LS P  KG
Sbjct: 315 QDPDLEEEEEEEDLVLTCEDDEDEELGGSSRVPVGGGPEATLSISDVRTLSEPPDKG 371

>ATG3_XENLA (Q6GQE7) Autophagy-related protein 3 (APG3-like)|
          Length = 313

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
 Frame = -2

Query: 398 QYCRTRFLPLFKTFPTQDLID-----LDREDVRSGRMEHIHH----GLRSAYRQFP-DTE 249
           Q+  T+ +P +K     +  D     ++ +D   G ++  HH    G+  A ++   +T+
Sbjct: 72  QFLMTKNVPCYKRCKQMEYSDEQEAIIEEDDGDGGWVDTFHHTGLSGVTEAVKEITLETQ 131

Query: 248 DI-KMEKILTVGNDEDQDEGRSSSEPKGEET--CEEQEPTRDLS 126
           D  K    + V +D+D DEG ++     EE+   E  + T D S
Sbjct: 132 DCGKTTDNIAVCDDDDDDEGEAADMEDYEESGLLENDDATVDTS 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,712,407
Number of Sequences: 219361
Number of extensions: 2204625
Number of successful extensions: 6483
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6388
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 7958637276
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)