ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14a20 |
|---|---|
| Clone Library Name | barley_pub |
>MMS2_SCHPO (O74983) Ubiquitin-conjugating enzyme spm2 (Ubiquitin-conjugating| enzyme variant MMS2 homolog) (UEV MMS2) Length = 139 Score = 95.5 bits (236), Expect = 7e-20 Identities = 45/81 (55%), Positives = 58/81 (71%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLANWQREYTMEHVLTQL 322 Y LK+ CD +YP+ P V F SRIN+ V+ ETG V+P K L +W+REY+ME VL L Sbjct: 58 YSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDL 117 Query: 321 KKDMAATQNRKLVQPPEGTFF 259 KK+MA++ NRKL QPPEG+ F Sbjct: 118 KKEMASSSNRKLPQPPEGSTF 138
>UB2V1_HUMAN (Q13404) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)| (Ubiquitin-conjugating enzyme variant Kua) (TRAF6-regulated IKK activator 1 beta Uev1A) Length = 221 Score = 82.0 bits (201), Expect = 8e-16 Identities = 39/78 (50%), Positives = 51/78 (65%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLANWQREYTMEHVLTQL 322 Y LK+ C YPE P VRF ++INM VN G VDP+ SVLA WQ Y+++ VL +L Sbjct: 139 YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQEL 198 Query: 321 KKDMAATQNRKLVQPPEG 268 ++ M + +N KL QPPEG Sbjct: 199 RRLMMSKENMKLPQPPEG 216
>UB2V1_MOUSE (Q9CZY3) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)| Length = 147 Score = 80.1 bits (196), Expect = 3e-15 Identities = 36/78 (46%), Positives = 53/78 (67%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLANWQREYTMEHVLTQL 322 Y LK+ C YPE PSVRF +R+NM+ V+ G VDP+ +VLA WQ ++++ +L +L Sbjct: 65 YSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQEL 124 Query: 321 KKDMAATQNRKLVQPPEG 268 ++ M + +N KL QPPEG Sbjct: 125 RRLMMSKENMKLPQPPEG 142
>UB2V2_RAT (Q7M767) Ubiquitin-conjugating enzyme E2 variant 2| (Ubiquitin-conjugating enzyme variant MMS2) Length = 144 Score = 80.1 bits (196), Expect = 3e-15 Identities = 37/78 (47%), Positives = 52/78 (66%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLANWQREYTMEHVLTQL 322 Y LK+ C YPE PSVRF ++INM +N+ +G VD + VLA WQ Y+++ VL +L Sbjct: 62 YSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQEL 121 Query: 321 KKDMAATQNRKLVQPPEG 268 ++ M + +N KL QPPEG Sbjct: 122 RRLMMSKENMKLPQPPEG 139
>UB2V2_MOUSE (Q9D2M8) Ubiquitin-conjugating enzyme E2 variant 2 (Ubc-like| protein MMS2) Length = 144 Score = 79.7 bits (195), Expect = 4e-15 Identities = 36/78 (46%), Positives = 52/78 (66%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLANWQREYTMEHVLTQL 322 Y LK+ C YPE PSVRF ++INM +N+ +G VD + VLA WQ Y+++ +L +L Sbjct: 62 YSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQEL 121 Query: 321 KKDMAATQNRKLVQPPEG 268 ++ M + +N KL QPPEG Sbjct: 122 RRLMMSKENMKLPQPPEG 139
>UB2V2_HUMAN (Q15819) Ubiquitin-conjugating enzyme E2 variant 2 (MMS2)| (Enterocyte differentiation-associated factor EDAF-1) (Enterocyte differentiation-promoting factor) (EDPF-1) (Vitamin D3-inducible protein) (DDVit 1) Length = 144 Score = 79.7 bits (195), Expect = 4e-15 Identities = 37/78 (47%), Positives = 52/78 (66%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLANWQREYTMEHVLTQL 322 Y LK+ C YPE PSVRF ++INM +N+ +G VD + VLA WQ Y+++ VL +L Sbjct: 62 YSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQEL 121 Query: 321 KKDMAATQNRKLVQPPEG 268 ++ M + +N KL QPPEG Sbjct: 122 RRLMMSKENMKLPQPPEG 139
>MMS2_YEAST (P53152) Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2)| Length = 137 Score = 76.6 bits (187), Expect = 3e-14 Identities = 38/81 (46%), Positives = 49/81 (60%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLANWQREYTMEHVLTQL 322 Y L + C +YP+ P V F S+IN+ CVN TG V F L +W+R YTME +L L Sbjct: 58 YSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD-FHTLRDWKRAYTMETLLLDL 116 Query: 321 KKDMAATQNRKLVQPPEGTFF 259 +K+MA N+KL QP EG F Sbjct: 117 RKEMATPANKKLRQPKEGETF 137
>MCF2L_RAT (Q63406) Guanine nucleotide exchange factor DBS (DBL's big sister)| (MCF2 transforming sequence-like protein) (OST oncogene) (Fragment) Length = 937 Score = 32.7 bits (73), Expect = 0.56 Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 11/145 (7%) Frame = -1 Query: 489 LFCDK-----DYPEKAPSVRFHSRINMACVN-HETGAVDPKKFSVLANWQREYTMEHVLT 328 LFC K + EKAPS + +NM V E D KKF + N + E + T Sbjct: 746 LFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPT 805 Query: 327 QLKKDMAATQNRKL----VQPPEGTFF*RSVCWPISSPVPTAAIYITPMGFEIYIRRLLP 160 K + RK+ +Q R++ S P+PT A G +++L Sbjct: 806 PEIKAAWVNEIRKVLTSQLQACREASQHRALEQSHSLPLPTPASTSPTKGSTRNVKKLED 865 Query: 159 ADLFPVLCETC-SSRSARLPLKGDG 88 P+ E C SS + P KG G Sbjct: 866 RKTDPLCLEGCVSSSLPKPPEKGKG 890
>VE7_HPV54 (Q81019) Protein E7| Length = 95 Score = 32.0 bits (71), Expect = 0.95 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = -1 Query: 318 KDMAATQNRKLVQPPEGTFF*RSVCWPISSPVPTAAIYITPMGFEIYIRRLLPADLFPVL 139 +D A + QP + F S C + +Y T G + ++ LL D ++ Sbjct: 29 EDSDAEDETAVTQPDKQAFKVLSQCGGVCCKTVRLCVYSTHTGIRV-LQELLHQDALQIV 87 Query: 138 CETCSSR 118 C TC+SR Sbjct: 88 CPTCASR 94
>UBC1_MOUSE (P61087) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLAN-WQREYTMEHVLTQ 325 YQL++ + YP P VRF ++I ++ TGA+ +L + W T+ VL Sbjct: 55 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLS 111 Query: 324 LKKDMAATQ 298 L+ +AA + Sbjct: 112 LQALLAAAE 120
>UBC1_HUMAN (P61086) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLAN-WQREYTMEHVLTQ 325 YQL++ + YP P VRF ++I ++ TGA+ +L + W T+ VL Sbjct: 55 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLS 111 Query: 324 LKKDMAATQ 298 L+ +AA + Sbjct: 112 LQALLAAAE 120
>UBC1_BOVIN (P61085) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLAN-WQREYTMEHVLTQ 325 YQL++ + YP P VRF ++I ++ TGA+ +L + W T+ VL Sbjct: 55 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLS 111 Query: 324 LKKDMAATQ 298 L+ +AA + Sbjct: 112 LQALLAAAE 120
>UBCD3_DROME (P35128) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (Protein bendless) Length = 151 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRI 430 ++L+LF +DYP AP VRF ++I Sbjct: 52 FKLELFLPEDYPMSAPKVRFITKI 75
>UBCD4_DROME (P52486) Ubiquitin-conjugating enzyme E2-22 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 199 Score = 29.6 bits (65), Expect = 4.7 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRINMACVNHETGAVDPKKFSVLA-NWQREYTMEHVLTQ 325 + L++ + YP P VRF +RI ++ TGA+ +L NW T+ VL Sbjct: 56 FVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAI---CLDILKDNWAAAMTLRTVLLS 112 Query: 324 LKKDMAATQ 298 L+ +AA + Sbjct: 113 LQALLAAAE 121
>Y3106_PSEAE (Q51576) Putative oxidoreductase PA3106 (EC 1.-.-.-)| Length = 255 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -3 Query: 355 RVHNGACLDPAEER-HGSDPEPQASAASRRDIL 260 R HNGA ++ A R H S+P+ +A AAS+ +L Sbjct: 133 RAHNGAIVNIASTRAHQSEPDSEAYAASKGGLL 165
>NUCM_CAFRO (Q9TAJ7) NADH-ubiquinone oxidoreductase 49 kDa subunit (EC 1.6.5.3)| (EC 1.6.99.3) (NADH dehydrogenase subunit 7) Length = 398 Score = 29.3 bits (64), Expect = 6.2 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Frame = -1 Query: 483 CDKDYPEKAPSVRFHSRINMACVNHETGAV---DPKKFSVLANWQREYTMEHVLTQLKK- 316 C Y + +R RI MAC+ + G D KKF W+ + +ME V+ K Sbjct: 261 CYDRYLIRMQEMRQSLRIMMACLKYLPGGSIKSDDKKFVPPLRWEMKNSMESVIHHFKYF 320 Query: 315 ----DMAATQNRKLVQPPEG 268 + A Q V+ P+G Sbjct: 321 TEGFKVPAGQTYAAVEAPKG 340
>UBC13_YEAST (P52490) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19)| (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) Length = 153 Score = 28.9 bits (63), Expect = 8.1 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -1 Query: 501 YQLKLFCDKDYPEKAPSVRFHSRI 430 ++L+L+ DYP +AP VRF ++I Sbjct: 52 FELELYLPDDYPMEAPKVRFLTKI 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,649,478 Number of Sequences: 219361 Number of extensions: 1669012 Number of successful extensions: 3703 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3702 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
