ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14a19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_719798.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 44 0.49
2gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cance... 44 0.49
3gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, c... 44 0.49
4gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, co... 44 0.49
5emb|CT476800.3| RP43-013D05, complete sequence 44 0.49
6ref|NM_114656.2| Arabidopsis thaliana binding AT3G47860 mRNA, co... 42 1.9
7emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chrom... 42 1.9
8emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on ch... 42 1.9
9emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chr... 42 1.9
10emb|AL607024.17| Mouse DNA sequence from clone RP23-194P5 on chr... 42 1.9
11emb|AL596166.1| Listeria innocua Clip11262 complete genome, segm... 42 1.9
12emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BA... 42 1.9
13gb|U84245.1|RNU84245 Rattus norvegicus Y4 receptor gene, complet... 42 1.9
14gb|AY044334.1| Arabidopsis thaliana putative protein (T23J7.190)... 42 1.9
15dbj|AK050863.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 42 1.9
16ref|NM_031581.1| Rattus norvegicus pancreatic polypeptide recept... 42 1.9
17emb|CR381614.10| Zebrafish DNA sequence from clone DKEY-72G4 in ... 42 1.9
18gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Can... 42 1.9
19emb|Z68180.1|RNPP1GN R.norvegicus pancreatic polypeptide recepto... 42 1.9
20gb|U42388.1|RNU42388 Rattus norvegicus panceatic polypeptide rec... 42 1.9
21gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Can... 42 1.9
22ref|XM_550305.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
23ref|XM_470551.1| Oryza sativa (japonica cultivar-group), predic... 40 7.6
24ref|XM_473791.1| Oryza sativa (japonica cultivar-group), predic... 40 7.6
25gb|AY596608.1| Saccharum officinarum clone SCCCRZ1001G11, comple... 40 7.6
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.6
27gb|AC123057.4| Mus musculus BAC clone RP23-184N6 from 3, complet... 40 7.6
28gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, comple... 40 7.6
29ref|XM_738248.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.6
30emb|BX936363.13| Zebrafish DNA sequence from clone CH211-112P19 ... 40 7.6
31gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 7.6
32emb|AL359259.18| Human DNA sequence from clone RP11-182B22 on ch... 40 7.6
33emb|AL159990.12| Human DNA sequence from clone RP11-141J10 on ch... 40 7.6
34emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4,... 40 7.6
35emb|CR628365.6| Zebrafish DNA sequence from clone CH211-137O16 i... 40 7.6
36gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, comp... 40 7.6
37emb|BX120000.8| Zebrafish DNA sequence from clone CH211-214C13 i... 40 7.6
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
41gb|AC112235.4| Homo sapiens BAC clone RP11-285D1 from 2, complet... 40 7.6
42gb|AC073934.1|AC073934 Human Chromosome 7 clone SCb-354C16, comp... 40 7.6
43dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
44emb|BX469926.18| Zebrafish DNA sequence from clone DKEY-229E3 in... 40 7.6
45emb|BX469913.15| Zebrafish DNA sequence from clone DKEY-237G5 in... 40 7.6
46gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, comple... 40 7.6
47emb|BX255905.4| Zebrafish DNA sequence from clone DKEY-11B8 in l... 40 7.6
48emb|BX321888.21| Zebrafish DNA sequence from clone DKEYP-47D4 in... 40 7.6
49emb|AL845481.5| Zebrafish DNA sequence from clone DKEY-46N18 in ... 40 7.6
50tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete int... 40 7.6
51gb|AC145869.2| Pan troglodytes BAC clone RP43-39F14 from chromos... 40 7.6
52emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in... 40 7.6
53gb|AC133159.3| Mus musculus BAC clone RP24-503F11 from 13, compl... 40 7.6
54gb|AC132567.3| Mus musculus BAC clone RP24-559G13 from 3, comple... 40 7.6
55gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 7.6
56gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
57emb|AJ001752.1|VFGLB3 Vicia faba L. Kleine Thueringer 40 7.6 
>ref|XM_719798.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04575)
           partial mRNA
          Length = 3591

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 514 taattataatgcaaatgattttgtta 539
           |||||||||||||||||||| |||||
Sbjct: 144 taattataatgcaaatgattatgtta 169
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>gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172457

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 523    tgcaaatgattttgttatgttt 544
              ||||||||||||||||||||||
Sbjct: 142847 tgcaaatgattttgttatgttt 142826
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>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence
          Length = 76158

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 180   gaaagcattcaccaaacttccagaat 205
             ||||||||| ||||||||||||||||
Sbjct: 22245 gaaagcatttaccaaacttccagaat 22220
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>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence
          Length = 171307

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 180    gaaagcattcaccaaacttccagaat 205
              ||||||||| ||||||||||||||||
Sbjct: 149048 gaaagcatttaccaaacttccagaat 149023
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>emb|CT476800.3| RP43-013D05, complete sequence
          Length = 207013

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 523    tgcaaatgattttgttatgttt 544
              ||||||||||||||||||||||
Sbjct: 202425 tgcaaatgattttgttatgttt 202404
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>ref|NM_114656.2| Arabidopsis thaliana binding AT3G47860 mRNA, complete cds
          Length = 1162

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 196  cttccagaatcaaaacactct 216
            |||||||||||||||||||||
Sbjct: 1141 cttccagaatcaaaacactct 1161
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>emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chromosome 10 Contains a
             novel gene and a novel MAM domain containing protein,
             complete sequence
          Length = 150889

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 508   gcgatgtaattataatgcaaatgattttgttat 540
             ||||||||||||||| ||||||| ||| |||||
Sbjct: 98424 gcgatgtaattataaggcaaatggtttggttat 98392
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>emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on chromosome 9 Contains
            the 5' end of the MAPKAP1 gene for mitogen-activated
            protein kinase associated protein 1, a novel gene, the 5'
            end of the PBX3 gene for pre-B-cell leukemia
            transcription factor 3 and three CpG islands, complete
            sequence
          Length = 109081

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 104  aacaacttcacaaatgatttg 124
            |||||||||||||||||||||
Sbjct: 2621 aacaacttcacaaatgatttg 2601
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>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
             pseudogene similar to part of a zinc finger protein, two
             novel pseudogenes, a novel gene similar to DKFZP434I1117,
             a novel pseudogene (FLJ23476), two novel gene, a novel
             gene similar to MGC12954 and four CpG islands, complete
             sequence
          Length = 186108

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   gaggcttcatttgggtactaa 296
             |||||||||||||||||||||
Sbjct: 10135 gaggcttcatttgggtactaa 10115
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>emb|AL607024.17| Mouse DNA sequence from clone RP23-194P5 on chromosome 11 Contains a
             novel gene, the Pafah1b1 gene for platelet-activating
             factor acetylhydrolase isoform 1b beta1 subunit, the 5'
             end of a novel gene and two CpG islands, complete sequence
          Length = 137908

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 402   ttgtgaataataatatgaacc 422
             |||||||||||||||||||||
Sbjct: 72702 ttgtgaataataatatgaacc 72722
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>emb|AL596166.1| Listeria innocua Clip11262 complete genome, segment 4/12
          Length = 260050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 447   aatttagttcanaatatcatacaaataa 474
             ||||| ||||| ||||||||||||||||
Sbjct: 93762 aatttcgttcaaaatatcatacaaataa 93789
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>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
          Length = 92493

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 196   cttccagaatcaaaacactct 216
             |||||||||||||||||||||
Sbjct: 80883 cttccagaatcaaaacactct 80863
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>gb|U84245.1|RNU84245 Rattus norvegicus Y4 receptor gene, complete cds
          Length = 1128

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 359 aaatgaaccagatgaccacaa 379
           |||||||||||||||||||||
Sbjct: 499 aaatgaaccagatgaccacaa 479
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>gb|AY044334.1| Arabidopsis thaliana putative protein (T23J7.190) mRNA, complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 196  cttccagaatcaaaacactct 216
            |||||||||||||||||||||
Sbjct: 1122 cttccagaatcaaaacactct 1142
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>dbj|AK050863.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030026P09
            product:unclassifiable, full insert sequence
          Length = 3314

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 402  ttgtgaataataatatgaacc 422
            |||||||||||||||||||||
Sbjct: 2843 ttgtgaataataatatgaacc 2823
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>ref|NM_031581.1| Rattus norvegicus pancreatic polypeptide receptor 1 (Ppyr1), mRNA
          Length = 1259

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 359 aaatgaaccagatgaccacaa 379
           |||||||||||||||||||||
Sbjct: 562 aaatgaaccagatgaccacaa 542
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>emb|CR381614.10| Zebrafish DNA sequence from clone DKEY-72G4 in linkage group 20, complete
              sequence
          Length = 153083

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      attttggaatgaagatcccaa 29
              |||||||||||||||||||||
Sbjct: 148504 attttggaatgaagatcccaa 148524
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>gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 198332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 44     aaattatgattaacaacagagacaa 68
              ||||||||||| |||||||||||||
Sbjct: 107266 aaattatgattcacaacagagacaa 107290
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>emb|Z68180.1|RNPP1GN R.norvegicus pancreatic polypeptide receptor PP1 gene
          Length = 1209

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 359 aaatgaaccagatgaccacaa 379
           |||||||||||||||||||||
Sbjct: 535 aaatgaaccagatgaccacaa 515
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>gb|U42388.1|RNU42388 Rattus norvegicus panceatic polypeptide receptor mRNA, complete cds
          Length = 1259

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 359 aaatgaaccagatgaccacaa 379
           |||||||||||||||||||||
Sbjct: 562 aaatgaaccagatgaccacaa 542
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>gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 189395

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 44    aaattatgattaacaacagagacaa 68
             ||||||||||| |||||||||||||
Sbjct: 46084 aaattatgattcacaacagagacaa 46060
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>ref|XM_550305.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4284

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 515  aattataatgcaaatgattt 534
            ||||||||||||||||||||
Sbjct: 2755 aattataatgcaaatgattt 2774
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>ref|XM_470551.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2295

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 515 aattataatgcaaatgattt 534
           ||||||||||||||||||||
Sbjct: 208 aattataatgcaaatgattt 227
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>ref|XM_473791.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2091

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 515 aattataatgcaaatgattt 534
           ||||||||||||||||||||
Sbjct: 208 aattataatgcaaatgattt 227
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>gb|AY596608.1| Saccharum officinarum clone SCCCRZ1001G11, complete sequence
          Length = 1735

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 523 tgcaaatgattttgttatgt 542
           ||||||||||||||||||||
Sbjct: 583 tgcaaatgattttgttatgt 602
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 515     aattataatgcaaatgattt 534
               ||||||||||||||||||||
Sbjct: 4278922 aattataatgcaaatgattt 4278903
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>gb|AC123057.4| Mus musculus BAC clone RP23-184N6 from 3, complete sequence
          Length = 223068

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   agctgttcaagctacataaa 331
             ||||||||||||||||||||
Sbjct: 13562 agctgttcaagctacataaa 13581
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>gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, complete sequence
          Length = 163125

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 176    tttggaaagcattcaccaaacttccaga 203
              ||||||||||||||| | ||||||||||
Sbjct: 101409 tttggaaagcattcagccaacttccaga 101436
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>ref|XM_738248.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000956.01.0)
            partial mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   aaattatgattaacaacaga 63
            ||||||||||||||||||||
Sbjct: 1367 aaattatgattaacaacaga 1386
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>emb|BX936363.13| Zebrafish DNA sequence from clone CH211-112P19 in linkage group 11,
             complete sequence
          Length = 184849

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   aaataaacacaattttgcca 488
             ||||||||||||||||||||
Sbjct: 30289 aaataaacacaattttgcca 30308
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 466     tacaaataaacacaattttg 485
               ||||||||||||||||||||
Sbjct: 1879630 tacaaataaacacaattttg 1879649
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>emb|AL359259.18| Human DNA sequence from clone RP11-182B22 on chromosome 1 Contains the
             3' end of the MTR gene for
             5-methyltetrahydrofolate-homocysteine methyltransferase, a
             novel gene (LOC149448), a ribosomal protein L35 (RPL35)
             pseudogene, and a novel gene similar to metallothionein 1H
             (MT1H), complete sequence
          Length = 172753

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 522   atgcaaatgattttgttatg 541
             ||||||||||||||||||||
Sbjct: 22628 atgcaaatgattttgttatg 22609
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>emb|AL159990.12| Human DNA sequence from clone RP11-141J10 on chromosome 9 Contains the
             3' end of the TRPM3 gene for transient receptor potential
             cation channel subfamily M, member 3 (MLSN2, LTRPC3,
             FLJ11726) and two novel genes, complete sequence
          Length = 148833

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    tggaatgaagatcccaaaataaac 36
             |||||||||||| |||||||||||
Sbjct: 95319 tggaatgaagatgccaaaataaac 95342
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>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
             complete sequence
          Length = 129037

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   aattataatgcaaatgattt 534
             ||||||||||||||||||||
Sbjct: 12934 aattataatgcaaatgattt 12915
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>emb|CR628365.6| Zebrafish DNA sequence from clone CH211-137O16 in linkage group 11,
             complete sequence
          Length = 191036

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   aaataaacacaattttgcca 488
             ||||||||||||||||||||
Sbjct: 46104 aaataaacacaattttgcca 46123
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>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence
          Length = 154939

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 98     tgacacaacaacttcacaaatgatttgc 125
              |||||| |||||| ||||||||||||||
Sbjct: 124123 tgacactacaactccacaaatgatttgc 124096
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>emb|BX120000.8| Zebrafish DNA sequence from clone CH211-214C13 in linkage group 17,
             complete sequence
          Length = 214728

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   taaattatcttacattaaga 347
             ||||||||||||||||||||
Sbjct: 77822 taaattatcttacattaaga 77841
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 515      aattataatgcaaatgattt 534
                ||||||||||||||||||||
Sbjct: 30537223 aattataatgcaaatgattt 30537204
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 515     aattataatgcaaatgattt 534
               ||||||||||||||||||||
Sbjct: 4279037 aattataatgcaaatgattt 4279018
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 515     aattataatgcaaatgattt 534
               ||||||||||||||||||||
Sbjct: 3866014 aattataatgcaaatgattt 3866033
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>gb|AC112235.4| Homo sapiens BAC clone RP11-285D1 from 2, complete sequence
          Length = 30304

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  ttgtgaataataatatgaac 421
            ||||||||||||||||||||
Sbjct: 9325 ttgtgaataataatatgaac 9344
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>gb|AC073934.1|AC073934 Human Chromosome 7 clone SCb-354C16, complete sequence
          Length = 131165

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 440   atacttcaatttagttcanaata 462
             |||||||||||||||||| ||||
Sbjct: 80862 atacttcaatttagttcaaaata 80840
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>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0089K24
          Length = 154137

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 515    aattataatgcaaatgattt 534
              ||||||||||||||||||||
Sbjct: 139556 aattataatgcaaatgattt 139575
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>emb|BX469926.18| Zebrafish DNA sequence from clone DKEY-229E3 in linkage group 20,
              complete sequence
          Length = 242408

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 448    atttagttcanaatatcatacaaataa 474
              |||||| ||| ||||||||||||||||
Sbjct: 224033 atttagctcaaaatatcatacaaataa 224007
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>emb|BX469913.15| Zebrafish DNA sequence from clone DKEY-237G5 in linkage group 20,
             complete sequence
          Length = 196927

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 448   atttagttcanaatatcatacaaataa 474
             |||||| ||| ||||||||||||||||
Sbjct: 29086 atttagctcaaaatatcatacaaataa 29060
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>gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, complete sequence
          Length = 140465

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   agcttacaaaatgaaccaga 370
             ||||||||||||||||||||
Sbjct: 13186 agcttacaaaatgaaccaga 13205
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>emb|BX255905.4| Zebrafish DNA sequence from clone DKEY-11B8 in linkage group 20,
             complete sequence
          Length = 118677

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   ataaacacaattttgccaac 490
             ||||||||||||||||||||
Sbjct: 87275 ataaacacaattttgccaac 87256
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>emb|BX321888.21| Zebrafish DNA sequence from clone DKEYP-47D4 in linkage group 20,
              complete sequence
          Length = 176463

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    ataaacacaattttgccaac 490
              ||||||||||||||||||||
Sbjct: 175694 ataaacacaattttgccaac 175713
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>emb|AL845481.5| Zebrafish DNA sequence from clone DKEY-46N18 in linkage group 17,
             complete sequence
          Length = 237313

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   taaattatcttacattaaga 347
             ||||||||||||||||||||
Sbjct: 68326 taaattatcttacattaaga 68307
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>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft
             Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN
             (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10
          Length = 495475

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ttgtgaataataatatgaac 421
             ||||||||||||||||||||
Sbjct: 57338 ttgtgaataataatatgaac 57357
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>gb|AC145869.2| Pan troglodytes BAC clone RP43-39F14 from chromosome 7, complete sequence
          Length = 201977

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 440    atacttcaatttagttcanaata 462
              |||||||||||||||||| ||||
Sbjct: 161533 atacttcaatttagttcaaaata 161555
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>emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in linkage group 14,
            complete sequence
          Length = 175892

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 519  ataatgcaaatgattttgtt 538
            ||||||||||||||||||||
Sbjct: 7734 ataatgcaaatgattttgtt 7715
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>gb|AC133159.3| Mus musculus BAC clone RP24-503F11 from 13, complete sequence
          Length = 156151

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    agcttacaaaatgaaccaga 370
              ||||||||||||||||||||
Sbjct: 131822 agcttacaaaatgaaccaga 131841
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>gb|AC132567.3| Mus musculus BAC clone RP24-559G13 from 3, complete sequence
          Length = 154142

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   agctgttcaagctacataaa 331
             ||||||||||||||||||||
Sbjct: 26974 agctgttcaagctacataaa 26955
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 448    atttagttcanaatatcatacaaataa 474
              |||| ||||| ||||||||||||||||
Sbjct: 806926 atttcgttcaaaatatcatacaaataa 806952
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>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15,
              complete sequence
          Length = 134307

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    aattataatgcaaatgattt 534
              ||||||||||||||||||||
Sbjct: 107537 aattataatgcaaatgattt 107518
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>emb|AJ001752.1|VFGLB3 Vicia faba L. Kleine Thueringer
          Length = 3973

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 taaattatcttacattaaga 347
           ||||||||||||||||||||
Sbjct: 827 taaattatcttacattaaga 846


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,658,524
Number of Sequences: 3902068
Number of extensions: 6658524
Number of successful extensions: 135821
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135512
Number of HSP's gapped (non-prelim): 309
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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