Clone Name | rbasd13l17 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 361 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctg 420 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || |||| Sbjct: 23659481 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 23659540 Query: 421 tccagcaaaaacctacaa 438 |||||| | ||||||||| Sbjct: 23659541 tccagctagaacctacaa 23659558 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 531 gtcttacaatctttattattgagatatttcctttttgatctgtcaagaagcatgaga 587 ||||||||||||| |||||||| ||| ||| ||||||||||||||| | ||||||| Sbjct: 23659699 gtcttacaatcttcattattga--tatctcccttttgatctgtcaagtaacatgaga 23659753
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 361 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctg 420 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || |||| Sbjct: 7557 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 7616 Query: 421 tccagcaaaaacctacaa 438 |||||| | ||||||||| Sbjct: 7617 tccagctagaacctacaa 7634 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 531 gtcttacaatctttattattgagatatttcctttttgatctgtcaagaagcatgaga 587 ||||||||||||| |||||||| ||| ||| ||||||||||||||| | ||||||| Sbjct: 7775 gtcttacaatcttcattattga--tatctcccttttgatctgtcaagtaacatgaga 7829
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 361 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctg 420 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || |||| Sbjct: 140445 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 140504 Query: 421 tccagcaaaaacctacaa 438 |||||| | ||||||||| Sbjct: 140505 tccagctagaacctacaa 140522 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 531 gtcttacaatctttattattgagatatttcctttttgatctgtcaagaagcatgaga 587 ||||||||||||| |||||||| ||| ||| ||||||||||||||| | ||||||| Sbjct: 140663 gtcttacaatcttcattattga--tatctcccttttgatctgtcaagtaacatgaga 140717
>dbj|AK102270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088P20, full insert sequence Length = 1916 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 361 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctg 420 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || |||| Sbjct: 420 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 361 Query: 421 tccagc 426 |||||| Sbjct: 360 tccagc 355
>gb|DQ248963.1| Oryza sativa (indica cultivar-group) serine/threonine kinase mRNA, complete cds Length = 1362 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 361 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctg 420 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || |||| Sbjct: 321 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 262 Query: 421 tccagc 426 |||||| Sbjct: 261 tccagc 256
>ref|XM_640139.1| Dictyostelium discoideum putative GlcNAc transferase (DDB0231460), partial mRNA Length = 1464 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 286 ataaacctgttaaaattgcacat 308 ||||||||||||||||||||||| Sbjct: 554 ataaacctgttaaaattgcacat 576
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence Length = 257109 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 286 ataaacctgttaaaattgcacat 308 ||||||||||||||||||||||| Sbjct: 25717 ataaacctgttaaaattgcacat 25695
>gb|AC124572.4| Mus musculus BAC clone RP23-159A20 from 12, complete sequence Length = 170191 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 462 aatggaaaactaaataagtaact 484 ||||||||||||||||||||||| Sbjct: 72773 aatggaaaactaaataagtaact 72751
>gb|AC122379.4| Mus musculus BAC clone RP23-476A7 from chromosome 13, complete sequence Length = 171737 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 tggaaaactaaataagtaactg 485 |||||||||||||||||||||| Sbjct: 37811 tggaaaactaaataagtaactg 37790
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 ccagttgtccttgtgcagctcc 181 |||||||||||||||||||||| Sbjct: 4600730 ccagttgtccttgtgcagctcc 4600709
>gb|AY010120.2| Xanthomonas oryzae pv. oryzae xanthomonadin biosynthetic gene cluster, partial seqence Length = 20310 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 ccagttgtccttgtgcagctcc 181 |||||||||||||||||||||| Sbjct: 17599 ccagttgtccttgtgcagctcc 17578
>gb|AE012059.1| Xanthomonas axonopodis pv. citri str. 306, section 437 of 469 of the complete genome Length = 12463 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 ccagttgtccttgtgcagctcc 181 |||||||||||||||||||||| Sbjct: 5769 ccagttgtccttgtgcagctcc 5748
>gb|AC127279.3| Mus musculus BAC clone RP24-247K4 from chromosome 10, complete sequence Length = 185573 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 347 ttaactactcaacatattttattgaa 372 ||||||||||| |||||||||||||| Sbjct: 144005 ttaactactcagcatattttattgaa 143980
>gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complete sequence Length = 203428 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 289 aacctgttaaaattgcacattttttg 314 ||||||||||||||||||||| |||| Sbjct: 34230 aacctgttaaaattgcacattctttg 34255
>gb|AC124744.3| Mus musculus BAC clone RP23-223E16 from 13, complete sequence Length = 199767 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 tggaaaactaaataagtaactg 485 |||||||||||||||||||||| Sbjct: 1933 tggaaaactaaataagtaactg 1954
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 atatggaaaatggtgcttgttt 258 |||||||||||||||||||||| Sbjct: 120459 atatggaaaatggtgcttgttt 120480
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 ccagttgtccttgtgcagctcc 181 |||||||||||||||||||||| Sbjct: 4605493 ccagttgtccttgtgcagctcc 4605472
>gb|AC104716.4| Homo sapiens chromosome 8 clone RP11-81A21 map q24.13, complete sequence Length = 147651 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gggggagaacaacaactaata 69 ||||||||||||||||||||| Sbjct: 123125 gggggagaacaacaactaata 123145
>gb|AF216671.7| Homo sapiens chromosome 8 clone RP11-300I14 map q24.13, complete sequence Length = 183027 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gggggagaacaacaactaata 69 ||||||||||||||||||||| Sbjct: 100737 gggggagaacaacaactaata 100757
>gb|AC133331.3| Homo sapiens chromosome 8 clone RP11-156O22 map q24.13, complete sequence Length = 174972 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gggggagaacaacaactaata 69 ||||||||||||||||||||| Sbjct: 85210 gggggagaacaacaactaata 85230
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 ccagttgtccttgtgcagctc 180 ||||||||||||||||||||| Sbjct: 4806380 ccagttgtccttgtgcagctc 4806360
>gb|AC145021.14| Medicago truncatula clone mth2-23a16, complete sequence Length = 119096 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 acaatctttattattgagata 556 ||||||||||||||||||||| Sbjct: 92769 acaatctttattattgagata 92749
>gb|AC130798.15| Medicago truncatula clone mth2-27f17, complete sequence Length = 92189 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 acaatctttattattgagata 556 ||||||||||||||||||||| Sbjct: 31493 acaatctttattattgagata 31473
>emb|AL138707.10| Human DNA sequence from clone RP11-430M15 on chromosome 13 Contains the 3' end of a novel gene (FLJ22153) and the 3' end of the gene for a novel protein (ortholog of rat putative four repeat ion channel), complete sequence Length = 181311 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 aacaacaactaatattctttt 76 ||||||||||||||||||||| Sbjct: 48938 aacaacaactaatattctttt 48918
>emb|BX936335.6| Zebrafish DNA sequence from clone CH211-287C12 in linkage group 3, complete sequence Length = 62086 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 295 ttaaaattgcacattttttgcacca 319 |||||||||||||||| |||||||| Sbjct: 5867 ttaaaattgcacatttattgcacca 5891
>gb|AC009908.13| Homo sapiens chromosome 8, clone RP11-6D1, complete sequence Length = 174981 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gggggagaacaacaactaata 69 ||||||||||||||||||||| Sbjct: 85217 gggggagaacaacaactaata 85237
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence Length = 167258 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 atgattgtgtatatttttgtctgtc 422 ||||||||||||||||||| ||||| Sbjct: 7832 atgattgtgtatatttttgactgtc 7808
>gb|AC099771.9| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-72621, Complete Sequence, complete sequence Length = 256933 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 542 tttattattgagatatttccttttt 566 ||||||||||| ||||||||||||| Sbjct: 156781 tttattattgaaatatttccttttt 156757
>gb|AC105221.3| Homo sapiens chromosome 18, clone RP11-480N3, complete sequence Length = 165396 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 398 atgattgtgtatatttttgtctgtc 422 ||||||||||||||||||| ||||| Sbjct: 1400 atgattgtgtatatttttgactgtc 1424
>gb|AC009958.3| Homo sapiens BAC clone RP11-316G9 from 2, complete sequence Length = 211201 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 307 attttttgcaccaactttgttaaaa 331 ||||||| ||||||||||||||||| Sbjct: 149973 atttttttcaccaactttgttaaaa 149949
>gb|AC110080.2| Homo sapiens BAC clone RP11-421K23 from 2, complete sequence Length = 172465 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 307 attttttgcaccaactttgttaaaa 331 ||||||| ||||||||||||||||| Sbjct: 77298 atttttttcaccaactttgttaaaa 77274
>dbj|AP000977.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-730K11, complete sequence Length = 187080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 gttgtccttgtgcagctccca 183 ||||||||||||||||||||| Sbjct: 78368 gttgtccttgtgcagctccca 78388
>ref|NG_000834.1| Homo sapiens immunoglobulin kappa locus, proximal V-cluster and J-C cluster (IGK-proximal) on chromosome 2 Length = 515442 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 307 attttttgcaccaactttgttaaaa 331 ||||||| ||||||||||||||||| Sbjct: 105937 atttttttcaccaactttgttaaaa 105961
>ref|NG_000833.1| Homo sapiens immunoglobulin kappa locus, distal duplicated V-cluster (IGK-distal) on chromosome 2 Length = 407661 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 307 attttttgcaccaactttgttaaaa 331 ||||||| ||||||||||||||||| Sbjct: 302170 atttttttcaccaactttgttaaaa 302146
>emb|AL669966.10| Mouse DNA sequence from clone RP23-174K9 on chromosome 4, complete sequence Length = 199890 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 acatacatgcatggtcaccat 285 ||||||||||||||||||||| Sbjct: 49417 acatacatgcatggtcaccat 49397
>dbj|AP001226.3| Homo sapiens genomic DNA, chromosome 2p11.2, clone:cos237 Length = 33101 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 307 attttttgcaccaactttgttaaaa 331 ||||||| ||||||||||||||||| Sbjct: 11921 atttttttcaccaactttgttaaaa 11897
>dbj|AP001224.3| Homo sapiens genomic DNA, chromosome 2p11.2, clone:cos211 Length = 39042 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 307 attttttgcaccaactttgttaaaa 331 ||||||| ||||||||||||||||| Sbjct: 12048 atttttttcaccaactttgttaaaa 12072
>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence Length = 209618 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 atggaaaatggtgcttgttt 258 |||||||||||||||||||| Sbjct: 149892 atggaaaatggtgcttgttt 149911
>gb|AC112970.18| Mus musculus chromosome 17, clone RP24-443D19, complete sequence Length = 172747 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 398 atgattgtgtatatttttgtctgt 421 |||| ||||||||||||||||||| Sbjct: 50118 atgagtgtgtatatttttgtctgt 50095
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 542 tttattattgagatatttcctttt 565 |||||||| ||||||||||||||| Sbjct: 134911 tttattatagagatatttcctttt 134934
>gb|BC029030.1| Mus musculus RIKEN cDNA 2610024E20 gene, mRNA (cDNA clone IMAGE:4951363), complete cds Length = 2794 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 taaaaatacattatgaatga 346 |||||||||||||||||||| Sbjct: 2220 taaaaatacattatgaatga 2201
>gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, complete sequence Length = 188453 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ttaggatatacaatggggat 48 |||||||||||||||||||| Sbjct: 101559 ttaggatatacaatggggat 101540
>gb|AC090890.3| Canis familiaris clone RP81-196D8, complete sequence Length = 175287 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 tgtattaccttgttttgtga 518 |||||||||||||||||||| Sbjct: 14455 tgtattaccttgttttgtga 14474
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 aatatcgtcaaaatgttgtt 456 |||||||||||||||||||| Sbjct: 4139951 aatatcgtcaaaatgttgtt 4139970 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ccttcaacaactatgagctt 213 |||||||||||||||||||| Sbjct: 4008019 ccttcaacaactatgagctt 4008038
>emb|AJ966993.1| Lotus corniculatus var. japonicus TY3-gypsy retrotransposon LORE1d Length = 5521 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 ctttattattgagatatttc 560 |||||||||||||||||||| Sbjct: 5417 ctttattattgagatatttc 5398
>gb|AC144916.3| Homo sapiens BAC clone RP11-15L7 from UL, complete sequence Length = 158759 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 caccaactttgttaaaaata 334 |||||||||||||||||||| Sbjct: 6772 caccaactttgttaaaaata 6753
>gb|AC113096.12| Mus musculus chromosome 14, clone RP23-312M23, complete sequence Length = 224556 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 543 ttattattgagatatttccttttt 566 ||||||||||| |||||||||||| Sbjct: 92130 ttattattgaggtatttccttttt 92153
>gb|AC115305.4| Mus musculus BAC clone RP24-372L1 from 18, complete sequence Length = 155389 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 taaaaatacattatgaatga 346 |||||||||||||||||||| Sbjct: 100478 taaaaatacattatgaatga 100459
>gb|AC122520.2| Mus musculus BAC clone RP24-470M22 from 6, complete sequence Length = 153520 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 tctttattattgagatattt 559 |||||||||||||||||||| Sbjct: 138784 tctttattattgagatattt 138765
>gb|AC136717.10| Mus musculus chromosome 7, clone RP23-48C24, complete sequence Length = 222854 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ccagttgtccttgtgcagct 179 |||||||||||||||||||| Sbjct: 58861 ccagttgtccttgtgcagct 58842
>gb|AC108435.5| Mus musculus chromosome 7, clone RP23-229O20, complete sequence Length = 203281 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ccagttgtccttgtgcagct 179 |||||||||||||||||||| Sbjct: 181471 ccagttgtccttgtgcagct 181452
>emb|AL355312.24| Human DNA sequence from clone RP11-350J20 on chromosome 6 Contains gene FLJ13287, the PCMT1 gene for protein-L-isoaspartate (D-aspartate) O-methyltransferase,gene FLJ14735, a novel pseudogene, a novel gene, t-complex 1 (TCP1) pseudogene, the gene for lymphocyte effector toxicity activation ligand (LETAL), the 5' end of a novel gene, a novel pseudogene similar to FLJ13465 and four CpG islands, complete sequence Length = 188684 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aactttgttaaaaatacatt 338 |||||||||||||||||||| Sbjct: 137648 aactttgttaaaaatacatt 137667
>gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, complete sequence Length = 190427 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 ttgagatatttcctttttga 568 |||||||||||||||||||| Sbjct: 40196 ttgagatatttcctttttga 40177
>gb|AC125790.2| Homo sapiens chromosome 5 clone CTD-2263N8, complete sequence Length = 106412 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 tattgagatatttccttttt 566 |||||||||||||||||||| Sbjct: 3507 tattgagatatttccttttt 3526
>gb|AC069417.19| Homo sapiens 3 BAC RP11-385K11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107000 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ctgttaaaattgcacatttt 311 |||||||||||||||||||| Sbjct: 97651 ctgttaaaattgcacatttt 97670
>gb|AC117806.11| Mus musculus chromosome 15, clone RP24-566D14, complete sequence Length = 194925 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ttgtgtatatttttgtctgt 421 |||||||||||||||||||| Sbjct: 83671 ttgtgtatatttttgtctgt 83652
>emb|CR759748.6| Zebrafish DNA sequence from clone DKEYP-118G11 in linkage group 17, complete sequence Length = 165743 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaaattgcacattttttgca 316 |||||||||||||||||||| Sbjct: 74625 aaaattgcacattttttgca 74606
>emb|CR392365.8| Zebrafish DNA sequence from clone DKEY-171P17 in linkage group 5, complete sequence Length = 168716 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaaattgcacattttttgca 316 |||||||||||||||||||| Sbjct: 72676 aaaattgcacattttttgca 72657
>emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in linkage group 7, complete sequence Length = 192070 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 aattgcacattttttgcacc 318 |||||||||||||||||||| Sbjct: 50469 aattgcacattttttgcacc 50450
>gb|AC104301.2| Homo sapiens chromosome 3 clone RP11-150N22, complete sequence Length = 189610 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 543 ttattattgagatatttccttttt 566 |||||||||||| ||||||||||| Sbjct: 65846 ttattattgagacatttccttttt 65869
>dbj|AK160210.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610024E20 product:hypothetical protein, full insert sequence Length = 1967 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 taaaaatacattatgaatga 346 |||||||||||||||||||| Sbjct: 1415 taaaaatacattatgaatga 1396
>gb|AE008561.1|AE008561 Streptococcus pneumoniae R6 section 177 of 184 of the complete genome Length = 11070 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 acatattttattgaacaatt 377 |||||||||||||||||||| Sbjct: 3589 acatattttattgaacaatt 3570
>emb|BX664603.6| Zebrafish DNA sequence from clone CH211-127L8 in linkage group 7, complete sequence Length = 190963 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 543 ttattattgagatatttccttttt 566 ||||||||||||||||| |||||| Sbjct: 148437 ttattattgagatattttcttttt 148414
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 tttattattgagatatttcctttt 565 |||||||| ||||||||||||||| Sbjct: 3180074 tttattatagagatatttcctttt 3180051
>emb|AL928985.24| Mouse DNA sequence from clone RP23-477P11 on chromosome 2, complete sequence Length = 83772 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aatggggatgggggagaaca 59 |||||||||||||||||||| Sbjct: 45494 aatggggatgggggagaaca 45475
>gb|AF130350.2|AF130350 Homo sapiens chromosome 21 clone PAC HO770 map 21q22.1, complete sequence Length = 101628 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 ctacaatatcgtcaaaatgttgtt 456 |||||||||| ||||||||||||| Sbjct: 29471 ctacaatatcttcaaaatgttgtt 29448
>gb|AC087593.6| Homo sapiens chromosome 15, clone RP11-247E14, complete sequence Length = 124394 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ctactcaacatattttattg 370 |||||||||||||||||||| Sbjct: 51371 ctactcaacatattttattg 51352
>gb|AC011808.4|AC011808 Arabidopsis thaliana chromosome I BAC F19K19 genomic sequence, complete sequence Length = 93485 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 443 gtcaaaatgttgttgtagtaatggaaaa 470 |||||||| |||| |||||||||||||| Sbjct: 11327 gtcaaaatcttgtagtagtaatggaaaa 11354
>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8, complete sequence Length = 209195 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 aattgcacattttttgcacc 318 |||||||||||||||||||| Sbjct: 144914 aattgcacattttttgcacc 144895
>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete sequence Length = 90498 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 443 gtcaaaatgttgttgtagtaatggaaaa 470 |||||||| |||| |||||||||||||| Sbjct: 73604 gtcaaaatcttgtagtagtaatggaaaa 73631
>gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, complete sequence Length = 109999 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 tattgagatatttccttttt 566 |||||||||||||||||||| Sbjct: 14098 tattgagatatttccttttt 14079
>emb|BX255907.8| Zebrafish DNA sequence from clone DKEY-4P13 in linkage group 2, complete sequence Length = 252614 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gttaaaattgcacatttttt 313 |||||||||||||||||||| Sbjct: 200566 gttaaaattgcacatttttt 200585
>gb|AF227510.1|AF227510 Homo sapiens chromosome 21 map 21q22.1 clone PAC B14273, complete sequence Length = 118018 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 ctacaatatcgtcaaaatgttgtt 456 |||||||||| ||||||||||||| Sbjct: 39298 ctacaatatcttcaaaatgttgtt 39321
>emb|AL163248.2|HS21C048 Homo sapiens chromosome 21 segment HS21C048 Length = 340000 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 ctacaatatcgtcaaaatgttgtt 456 |||||||||| ||||||||||||| Sbjct: 186775 ctacaatatcttcaaaatgttgtt 186798
>emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 in linkage group 19, complete sequence Length = 168768 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 acaagatagatccttcaaca 202 |||||||||||||||||||| Sbjct: 55040 acaagatagatccttcaaca 55021
>dbj|AP003530.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-514H18, complete sequence Length = 205804 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 agtaatggaaaactaaataa 478 |||||||||||||||||||| Sbjct: 137008 agtaatggaaaactaaataa 137027
>dbj|AP002810.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-852N2, complete sequences Length = 191909 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 agtaatggaaaactaaataa 478 |||||||||||||||||||| Sbjct: 32074 agtaatggaaaactaaataa 32093
>emb|BX322614.3| Zebrafish DNA sequence from clone CH211-215G1 in linkage group 16, complete sequence Length = 199783 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgtttggatggacatacatg 273 |||||||||||||||||||| Sbjct: 99581 tgtttggatggacatacatg 99600
>emb|Z83239.1|CET09F5 Caenorhabditis elegans Cosmid T09F5, complete sequence Length = 37512 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 ttttgcaccaactttgttaaaaat 333 ||||||||||| |||||||||||| Sbjct: 9958 ttttgcaccaaatttgttaaaaat 9981
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 542 tttattattgagatatttcctttt 565 |||||||| ||||||||||||||| Sbjct: 3188779 tttattatagagatatttcctttt 3188756
>emb|CR974484.9| Mouse DNA sequence from clone RP23-1D11 on chromosome 12, complete sequence Length = 203805 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agatccttcaacaactatga 209 |||||||||||||||||||| Sbjct: 116898 agatccttcaacaactatga 116917
>gb|AC133437.2| Homo sapiens X BAC RP11-712B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75967 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 tcaacatattttattgaacaattc 378 |||||||||||||||| ||||||| Sbjct: 56522 tcaacatattttattgcacaattc 56545 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,322,517 Number of Sequences: 3902068 Number of extensions: 7322517 Number of successful extensions: 163489 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 162475 Number of HSP's gapped (non-prelim): 1011 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)