ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13l15 |
|---|---|
| Clone Library Name | barley_pub |
>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4| Length = 211 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -3 Query: 485 VPAFGDWDMKNGAMPD-YSMDFSKIREMR 402 VP FGDWD N + D Y+ F+K+RE R Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREER 176
>NAPA_YERPS (Q668I0) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 830 Score = 31.2 bits (69), Expect = 2.6 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S P SGP+SL G PS G Sbjct: 389 NLHLLTGKISTPGSGPFSLTGQPSACG 415
>NAPA_YERPE (Q8ZCF3) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 830 Score = 31.2 bits (69), Expect = 2.6 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S P SGP+SL G PS G Sbjct: 389 NLHLLTGKISTPGSGPFSLTGQPSACG 415
>NARB_SYNY3 (P73448) Nitrate reductase (EC 1.7.99.4)| Length = 714 Score = 31.2 bits (69), Expect = 2.6 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +1 Query: 208 LRNLFLPVGESSRPWSGPWSLAGAPSLVG 294 L NL L G+ +P SGP+SL G P+ +G Sbjct: 322 LINLHLLTGQIGKPGSGPFSLTGQPNAMG 350
>GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial precursor (EC| 3.5.1.2) (GLS) (L-glutamine amidohydrolase) (K-glutaminase) [Contains: Glutaminase kidney isoform 68 kDa chain; Glutaminase kidney isoform 65 kDa chain] Length = 674 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/60 (28%), Positives = 27/60 (45%) Frame = -3 Query: 620 LASKSAPRLQQQQQEEENIRASPGARSSMEKDGHKEGEGATAWMTVPAFGDWDMKNGAMP 441 L P QQQQQ+++ + P A + G + G + + A GD +K G +P Sbjct: 83 LGKGGTPPQQQQQQQQQPGASPPAAPGPKDSPGETDAFGNSEGKEMVAAGDNKVKQGLLP 142
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -3 Query: 611 KSAPRLQQQQQEEENIRASPGARSSMEKDGHKEGE 507 KS + QQQQQ+++ + P RSS E+ KE E Sbjct: 492 KSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKE 526
>EATA_ECOLI (Q84GK0) Serine protease eatA precursor (EC 3.4.21.-) (Secreted| autotransporter protein eatA) (ETEC autotransporter A) Length = 1364 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 8 YLDIHKQFVSHTNRFVL*TDSVGTSNYITHSLVA 109 Y D+ +++ H NR+ L S+G +Y +HSL A Sbjct: 1182 YFDLIGKYLHHDNRYTLNFASLGERSYTSHSLYA 1215
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 30.4 bits (67), Expect = 4.4 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 18/103 (17%) Frame = -3 Query: 614 SKSAPRL----QQQQQEEENIRASPGARSSMEKDGHKEG------EGATAWMTV------ 483 +KSA +L + EEEN+ A S E++ G EG +V Sbjct: 465 TKSADKLFGSESDSENEEENLIADIFGESGDEEEEEFTGFNQEDLEGEKTVTSVNRQQAA 524 Query: 482 --PAFGDWDMKNGAMPDYSMDFSKIREMRKQNKKELSRASLGG 360 + D DMK+G M DY DF + E +K + R GG Sbjct: 525 AADSDSDDDMKSGKMGDYKSDFDLMLERKKSMSGKQRRNRDGG 567
>YKC3_YEAST (P36103) Hypothetical 32.3 kDa protein in URA6-CDC16 intergenic| region Length = 277 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -3 Query: 455 NGAMPDYSMDFSKIREMRKQNKKELS 378 NGA P ++D SK E R++N KELS Sbjct: 130 NGASPSPNLDRSKKNEKRRKNAKELS 155
>NAPA_SHISS (Q3Z001) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_SHIFL (Q83QV0) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_SHIDS (Q32I06) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_SHIBS (Q31Z29) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_SALTY (Q8ZNH6) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_SALTI (Q8Z570) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_SALPA (Q5PI61) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_SALCH (Q57M92) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_ECOLI (P33937) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_ECOL6 (Q8CVW4) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>NAPA_ECO57 (Q8XE47) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 NL L G+ S+P GP+SL G PS G Sbjct: 389 NLHLLTGKISQPGCGPFSLTGQPSACG 415
>FRQ_CRESP (Q00586) Frequency clock protein| Length = 1015 Score = 30.0 bits (66), Expect = 5.7 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = -3 Query: 617 ASKSAPRLQQQQQEEENIRASPGARSSMEKDGHKEGEGATAWMTVPAFG 471 +S+S+ L Q+ E ++ + G +K GH G+ ++ +P FG Sbjct: 559 SSESSGDLSQRSPETDDTENTKGDNHKRQKTGHSTGDSGSSGNNLPKFG 607
>NAPA_PASMU (Q9CKL8) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 29.6 bits (65), Expect = 7.5 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 N+ L G+ S+P GP+SL G PS G Sbjct: 389 NIHLLTGKISKPGCGPFSLTGQPSACG 415
>NAPA_ERWCT (Q6D5Z2) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 828 Score = 29.3 bits (64), Expect = 9.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 N+ L G+ S+P GP+SL G PS G Sbjct: 389 NIHLLTGKISQPGCGPFSLTGQPSACG 415
>FTSZ_ENTFA (O08439) Cell division protein ftsZ| Length = 410 Score = 29.3 bits (64), Expect = 9.8 Identities = 20/81 (24%), Positives = 35/81 (43%) Frame = -3 Query: 584 QQEEENIRASPGARSSMEKDGHKEGEGATAWMTVPAFGDWDMKNGAMPDYSMDFSKIREM 405 +Q + ++ S+E D K E A+A FGDWD++ +D S + ++ Sbjct: 327 RQTRQAVQPMQQTTQSVEMDQPKSQEEASA------FGDWDIRREQNTRPKVDESSLEQV 380 Query: 404 RKQNKKELSRASLGGDDDLLA 342 K+ R +DD L+ Sbjct: 381 DKKEFDTFHREEPNHNDDELS 401
>NAPA_MANSM (Q65Q72) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 830 Score = 29.3 bits (64), Expect = 9.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVG 294 N+ L G+ S+P GP+SL G PS G Sbjct: 391 NVHLLTGKISKPGCGPFSLTGQPSACG 417
>NASA_KLEOX (Q06457) Nitrate reductase (EC 1.7.99.4)| Length = 866 Score = 29.3 bits (64), Expect = 9.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 214 NLFLPVGESSRPWSGPWSLAGAPSLVGWGALDG 312 N+ L G+ RP GP+SL G P+ +G + G Sbjct: 301 NVHLACGKYGRPGCGPFSLTGQPNAMGGREVGG 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,334,176 Number of Sequences: 219361 Number of extensions: 1128878 Number of successful extensions: 4198 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4011 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4179 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
