ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13l13 |
|---|---|
| Clone Library Name | barley_pub |
>TRK1_SACBA (P28569) High-affinity potassium transport protein| Length = 1241 Score = 34.3 bits (77), Expect = 0.26 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = -2 Query: 405 EDLQPQI*FPHQKRRMGGHI*AHLHPTRPTKDRLPXDXARSAI*ENNTSE 256 +DL P+ FPHQK+ G+I HL R + ++ + +I +N++S+ Sbjct: 460 DDLNPRSIFPHQKKSSKGYIMKHLPKARRIRQQIKRRLSTGSIDKNSSSD 509
>UBE3A_MOUSE (O08759) Ubiquitin-protein ligase E3A (EC 6.3.2.-) (Oncogenic| protein-associated protein E6-AP) Length = 885 Score = 31.6 bits (70), Expect = 1.7 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 312 PWLVELGEDVLKCARPFVSFGEEIRSEVEDLLDGRRD 422 P ELG L C +P +SF E I + D+L+ +D Sbjct: 438 PLETELGVKTLDCRKPLISFEESINEPLNDVLEMDKD 474
>Y462_MYCPN (P75321) Hypothetical protein MPN462 (H08_orf270)| Length = 270 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = -3 Query: 281 PFERTTPAKEHGILSDFQRE-LVELASFLNGDIHVDEFCSGDAEKDDREAGRHVCETSHQ 105 P RT HG+ R+ LV+ F N H D F G A ++ + G +T ++ Sbjct: 167 PSWRTPKWNHHGLWDWKARDVLVQTTGFFNPRRHPDWFDQGQAVAENTQTGFDTDDTDNK 226 Query: 104 RFSARKQAGQT 72 + RKQ Q+ Sbjct: 227 KQGFRKQGEQS 237
>FABH_RHIME (Q92QT4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 323 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Frame = -2 Query: 567 GASAILLQVRPARGQGADNDGVAVDQEXDG---------GGAAAERTVGHIRV 436 GA AI+L+ + A G AD + DG GG + TVGH+R+ Sbjct: 161 GAGAIVLEAQEAAGTKADRGVLTAQLRSDGAHRDKLYVDGGPSTTGTVGHLRM 213
>FABH_BRUSU (Q8G1E0) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 323 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = -2 Query: 567 GASAILLQVRPARGQGADNDGVAVDQEXDG---------GGAAAERTVGHIRV 436 GA AI+L+ G +D +A + DG GG + +TVGH+R+ Sbjct: 161 GAGAIVLEAAEGHGLTSDRGILAANLRSDGNHKEKLYVDGGPSTTQTVGHLRM 213
>FABH_BRUME (Q8YGH9) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 323 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = -2 Query: 567 GASAILLQVRPARGQGADNDGVAVDQEXDG---------GGAAAERTVGHIRV 436 GA AI+L+ G +D +A + DG GG + +TVGH+R+ Sbjct: 161 GAGAIVLEAAEGHGLTSDRGILAANLRSDGNHKEKLYVDGGPSTTQTVGHLRM 213
>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 730 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Frame = +3 Query: 255 FRWCCSLKWHFWXSLWAICPWLVE--------LGEDVLKCARPFVSFGEEIRSEVEDLLD 410 +RWC + + L+ CP V+ GE C PFV G++ S D Sbjct: 311 YRWCATTANYDQDKLYGFCPTRVDATVVGGNSAGE---LCVFPFVFLGKQYSSCTS---D 364 Query: 411 GRRDG 425 GRRDG Sbjct: 365 GRRDG 369
>ADP1_MYCGE (P20796) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)| (MgPa) Length = 1444 Score = 30.0 bits (66), Expect = 4.9 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = -3 Query: 281 PFERTTPAKEHGILSDFQRELV-ELASFLNGDIHVDEFCSGDAEKDDREAGRHVCETSHQ 105 P +T HGI R L+ + F N H + F G A+ D+ G V +T H+ Sbjct: 372 PSWKTPKWNHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHK 431 Query: 104 RFSARKQAGQTV 69 + +K + + Sbjct: 432 KDGFKKNSSSPI 443
>IBMP_CAMVD (P03557) Inclusion body matrix protein (Viroplasmin)| Length = 522 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = -1 Query: 178 TSFAQETQKKMTVKQADTYVRRAIKGFLHASRQARRLGANESAIVTMRSSXQVRVPPQD 2 T+ + T+K + +K T I+G LH RQ +G ++ I T + + R+ +D Sbjct: 329 TNCIKNTEKDIFLKIRSTIPVWTIQGLLHKPRQVIEIGVSKKVIPTESKAMESRIQIED 387
>GSH1_PHOLL (Q7N7A4) Glutamate--cysteine ligase (EC 6.3.2.2)| (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 519 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 297 LWAICPWLVELGEDVLKCARPFVSFGEEIRSEVEDLLDGRRDGGVLVLGCG 449 +W + E+G D L C R ++ +L+GR+ G ++ LGCG Sbjct: 355 IWCVLAEAPEMGSDELDCCR---------KNWNRVILEGRKPGQMIGLGCG 396
>SCNNA_BOVIN (P55270) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 650 Score = 29.3 bits (64), Expect = 8.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 48 IADSFAPNRLACLLACRKPLMARLTYVSACFT 143 + D+F+ +RL C CRKP + +SA ++ Sbjct: 441 LQDAFSSDRLGCFTKCRKPCSVTIYKLSASYS 472
>PHLN_BURPS (Q9RGS8) Non-hemolytic phospholipase C precursor (EC 3.1.4.3)| (PLC-N) (Phosphatidylcholine cholinephosphohydrolase) (Phosphatidylcholine-hydrolyzing phospholipase C) (PC-PLC) Length = 700 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -3 Query: 533 LGVRVPTMMVSPWIKKXMVVGRPPNGPSATSEYEHSSIPATIKKIFNLR 387 LG RVP ++VSPW K G + ++H+S+ I+ FN R Sbjct: 395 LGPRVPMLVVSPWTK---------GGWVCSQTFDHTSLLQFIEARFNDR 434 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,640,527 Number of Sequences: 219361 Number of extensions: 1454755 Number of successful extensions: 4476 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4472 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
