ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUB2_HORVU (P12257) Lichenase-2 precursor (EC 3.2.1.73) (Lichena... 51 1e-06
2E13E_HORVU (Q02438) Glucan endo-1,3-beta-glucosidase GV (EC 3.2.... 35 0.075
3E13F_HORVU (Q02439) Putative glucan endo-1,3-beta-glucosidase GV... 33 0.37
4E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 ... 32 0.49
5PHK_MYCPA (Q73ZM8) Probable phosphoketolase (EC 4.1.2.-) 30 3.2
6E13C_HORVU (Q02126) Glucan endo-1,3-beta-glucosidase GIII precur... 30 3.2
7ENGC1_BACTN (Q8A5I9) Probable GTPase engC protein 1 (EC 3.6.1.-) 29 4.1
8THT1_SCHPO (Q09684) Nuclear fusion protein tht1 29 4.1
9E13B_PEA (Q03467) Glucan endo-1,3-beta-glucosidase precursor (EC... 29 5.4
10E13D_HORVU (Q02437) Glucan endo-1,3-beta-glucosidase GIV (EC 3.2... 28 7.1
11GUB_NICPL (P07979) Lichenase precursor (EC 3.2.1.73) (Endo-beta-... 28 7.1

>GUB2_HORVU (P12257) Lichenase-2 precursor (EC 3.2.1.73) (Lichenase II)|
           (Endo-beta-1,3-1,4 glucanase II)
           ((1->3,1->4)-beta-glucanase isoenzyme EII) (Fragment)
          Length = 312

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = -1

Query: 427 GVEQNWGLFYPNMQHVYPISF 365
           GVEQNWGLFYPNMQHVYPI+F
Sbjct: 292 GVEQNWGLFYPNMQHVYPINF 312



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>E13E_HORVU (Q02438) Glucan endo-1,3-beta-glucosidase GV (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase GV)
           ((1->3)-beta-glucanase isoenzyme GV)
           (Beta-1,3-endoglucanase GV)
          Length = 316

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -1

Query: 430 DGVEQNWGLFYPNMQHVYPISF 365
           D VE+N+GLF+PN Q VYP +F
Sbjct: 293 DEVERNFGLFFPNKQPVYPTTF 314



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>E13F_HORVU (Q02439) Putative glucan endo-1,3-beta-glucosidase GVI precursor|
           (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase GVI)
           ((1->3)-beta-glucanase isoenzyme GVI)
           (Beta-1,3-endoglucanase GVI) (Fragment)
          Length = 321

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 430 DGVEQNWGLFYPNMQHVYPISF 365
           +GVEQN+G+F P+M  VY + F
Sbjct: 295 EGVEQNFGMFQPDMSQVYHVDF 316



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>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 505

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 421 EQNWGLFYPNMQHVYPISF**GSS 350
           E+NWG+ +PN   VYP+S   GSS
Sbjct: 329 ERNWGILFPNGTSVYPLSLSGGSS 352



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>PHK_MYCPA (Q73ZM8) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 804

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 286 AHIMYCT-GLGLGTWDATAEAAQMRTRVVVACYTSVP 179
           A I +CT GLG+  W +TA +      VV+AC   +P
Sbjct: 602 AAIAHCTRGLGIWDWASTARSIGAEPDVVLACAGDIP 638



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>E13C_HORVU (Q02126) Glucan endo-1,3-beta-glucosidase GIII precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase GIII)
           ((1->3)-beta-glucanase isoenzyme GIII)
           (Beta-1,3-endoglucanase GIII)
          Length = 330

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 430 DGVEQNWGLFYPNMQHVYPISF 365
           D +E+N+GLF PNM   Y I+F
Sbjct: 309 DELEKNFGLFKPNMSPAYAITF 330



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>ENGC1_BACTN (Q8A5I9) Probable GTPase engC protein 1 (EC 3.6.1.-)|
          Length = 310

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 184 VPVRMIFDGREAYANAPPSSIDHALDTYTHVCVPRNYIVGFKISSK 47
           VPV+++F+  +AY       +D  ++ YTH+  P      FK+S+K
Sbjct: 119 VPVKLVFNKVDAYNEDELRYLDALINLYTHIGYP-----CFKVSAK 159



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>THT1_SCHPO (Q09684) Nuclear fusion protein tht1|
          Length = 577

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 131 RGSVCICFPSIENHTYWYTSIASHYYSRTHLSCLS 235
           RGS   C   +E+ + W+ S  SH++   HL  L+
Sbjct: 114 RGSQSECVSKLESTSTWWLSFTSHFHDVNHLCRLA 148



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>E13B_PEA (Q03467) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 370

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 424 VEQNWGLFYPNMQHVYPISF 365
           +E+++G+FYPN Q  YP  F
Sbjct: 327 LEKHFGVFYPNKQKKYPFGF 346



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>E13D_HORVU (Q02437) Glucan endo-1,3-beta-glucosidase GIV (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase GIV)
           ((1->3)-beta-glucanase isoenzyme GIV)
           (Beta-1,3-endoglucanase GIV)
          Length = 327

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 421 EQNWGLFYPNMQHVYPISF 365
           E+++GLFYPN + VY I+F
Sbjct: 290 ERHFGLFYPNKRPVYHINF 308



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>GUB_NICPL (P07979) Lichenase precursor (EC 3.2.1.73) (Endo-beta-1,3-1,4|
           glucanase)
          Length = 370

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 424 VEQNWGLFYPNMQHVYPISF 365
           +E+++GLF PN Q  YP+SF
Sbjct: 327 LEKHFGLFSPNKQPKYPLSF 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,817,882
Number of Sequences: 219361
Number of extensions: 1126708
Number of successful extensions: 2412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2412
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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