>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit, complete cds,
            clone:6, subclone:16
          Length = 5980

 Score =  216 bits (109), Expect = 2e-53
 Identities = 194/219 (88%), Gaps = 10/219 (4%)
 Strand = Plus / Minus

                                                                        
Query: 7    ccgcttgttgtatatattataaatatgacacaggtgttgtatatgtgtaggcggtgctag 66
            ||||||||||||||||  |||||||| |||| |||||||||||||||||| |||||||||
Sbjct: 1470 ccgcttgttgtatata--ataaatatcacactggtgttgtatatgtgtagccggtgctag 1413

                                                                        
Query: 67   aatttacatatgcatatatgctccacaacctatgctcgtacatacacagatcatagagaa 126
            |||||||||||||    ||||||||||||||||| ||||||| ||||||||||||  |||
Sbjct: 1412 aatttacatatgc----atgctccacaacctatgttcgtacaaacacagatcataccgaa 1357

                                                                        
Query: 127  -gaaaattatgctctggtcggaaagcagagtcgtggacaaaagtgaagttcacaaaagac 185
             ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 1356 ggaaaaatatgctctggtcgggaagcagagtcctggacaaaagtgaagttcacaaaagac 1297

                                                   
Query: 186  cttcatacgacataggccattctttcacctcgtagttta 224
              ||||   |||||||||||| ||| | |||||||||||
Sbjct: 1296 aatcat---acataggccattgttttaactcgtagttta 1261



 Score =  153 bits (77), Expect = 3e-34
 Identities = 175/204 (85%), Gaps = 9/204 (4%)
 Strand = Plus / Minus

                                                                        
Query: 19   tatattataaatatgacacaggtgttgtatatgtgtaggcggtgctagaatttacatatg 78
            ||||| |||||||| ||| ||||||||||||||||||| | ||||||||||||||| |||
Sbjct: 5863 tatataataaatatcacataggtgttgtatatgtgtagtcagtgctagaatttacacatg 5804

                                                                        
Query: 79   catatatgctccacaacctatgctcgtacatacacagatcatagagaa-gaaaattatgc 137
            ||     ||||||||||| ||| ||||||||||||| || ||| |||| ||||| |||||
Sbjct: 5803 cac----gctccacaaccaatgttcgtacatacacatattatacagaacgaaaaatatgc 5748

                                                                        
Query: 138  tctggtcggaaagcagagtcgtggacaaaagtgaagttcacaaaagaccttcatacgaca 197
            |||||| || | ||||||||||||| |||||||||||||||||||||||||| |   |||
Sbjct: 5747 tctggtaggca-gcagagtcgtggagaaaagtgaagttcacaaaagaccttcgt---aca 5692

                                    
Query: 198  taggccattctttcacctcgtagt 221
            ||||||||| ||||| ||| ||||
Sbjct: 5691 taggccattgtttcaactcatagt 5668



 Score =  139 bits (70), Expect = 4e-30
 Identities = 150/173 (86%), Gaps = 9/173 (5%)
 Strand = Plus / Minus

                                                                        
Query: 7    ccgcttgttgtatatattataaatatgacacaggtgttgtatatgtgtaggcggtgctag 66
            ||||||||||||||||  |||| ||| ||||  |||||||||||||  || |||||||||
Sbjct: 4522 ccgcttgttgtatata--ataattatcacaccagtgttgtatatgt--agccggtgctag 4467

                                                                        
Query: 67   aatttacatatgcatatatgctccacaacctatgctcgtacatacacagatcatagagaa 126
            | |||||| ||||||    ||||||||||||||| | |||||||||||||||||| ||||
Sbjct: 4466 agtttacacatgcat----gctccacaacctatgtttgtacatacacagatcatacagaa 4411

                                                                 
Query: 127  gaaaa-ttatgctctggtcggaaagcagagtcgtggacaaaagtgaagttcac 178
             |||| |||||||  |||||||||||||||||||||| |||||||||||||||
Sbjct: 4410 caaaaattatgcttaggtcggaaagcagagtcgtggagaaaagtgaagttcac 4358

>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 155  gtcgtggacaaaagtgaagttcacaaaagaccttcatacgacataggccattctttcacc 214
            |||||||||||||||||||||||||||||| ||||||| || |||||||||| ||||| |
Sbjct: 1576 gtcgtggacaaaagtgaagttcacaaaagatcttcatatgagataggccattgtttcaac 1517

                      
Query: 215  tcgtagttta 224
            || |||||||
Sbjct: 1516 tcatagttta 1507



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 51/57 (89%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                     
Query: 105  tacatacacagatcatagagaagaaaat-tatgctctggtcggaaagcagagtcgtg 160
            |||||||||| |||||| |||| ||||  ||||||| ||||||||||||||||||||
Sbjct: 1641 tacatacacaaatcatatagaacaaaaggtatgctccggtcggaaagcagagtcgtg 1585

>gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complete sequence
          Length = 152251

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 65     agaatttacatatgcatatatgc 87
              |||||||||||||||||||||||
Sbjct: 124176 agaatttacatatgcatatatgc 124198

>emb|AL772245.7| Mouse DNA sequence from clone RP23-332K6 on chromosome 4, complete
             sequence
          Length = 70508

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    aatttacatatgcatatatgc 87
             |||||||||||||||||||||
Sbjct: 46373 aatttacatatgcatatatgc 46393

>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete
              sequence
          Length = 228428

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     gaatttacatatgcatatatg 86
              |||||||||||||||||||||
Sbjct: 158744 gaatttacatatgcatatatg 158764

>ref|NM_104705.2| Arabidopsis thaliana ATTPS10; transferase, transferring glycosyl
           groups / trehalose-phosphatase AT1G60140 (ATTPS10) mRNA,
           complete cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 caaaagtgaagttcacaaaa 182
           ||||||||||||||||||||
Sbjct: 125 caaaagtgaagttcacaaaa 106

>gb|AC135567.3| Mus musculus BAC clone RP23-312I24 from chromosome 16, complete
             sequence
          Length = 208603

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    atttacatatgcatatatgc 87
             ||||||||||||||||||||
Sbjct: 85767 atttacatatgcatatatgc 85748

>ref|XM_845494.1| PREDICTED: Canis familiaris similar to tripartite motif protein 24
           (LOC608463), partial mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 agtgaagttcacaaaagacc 186
           ||||||||||||||||||||
Sbjct: 215 agtgaagttcacaaaagacc 234

>ref|XM_843482.1| PREDICTED: Canis familiaris similar to tripartite motif protein 24
           (LOC606986), partial mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 agtgaagttcacaaaagacc 186
           ||||||||||||||||||||
Sbjct: 215 agtgaagttcacaaaagacc 234

>gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome 16, complete sequence
          Length = 195446

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     atttacatatgcatatatgc 87
              ||||||||||||||||||||
Sbjct: 152904 atttacatatgcatatatgc 152885

>ref|XM_847054.1| PREDICTED: Canis familiaris similar to Transcription intermediary
           factor 1-alpha (TIF1-alpha) (Tripartite motif protein
           24) (RING finger protein 82) (LOC609728), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 agtgaagttcacaaaagacc 186
           ||||||||||||||||||||
Sbjct: 585 agtgaagttcacaaaagacc 604

>ref|XM_718658.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03582)
           partial mRNA
          Length = 2811

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  gttgtatatattataaatat 32
           ||||||||||||||||||||
Sbjct: 186 gttgtatatattataaatat 167

>gb|DP000038.2| Colobus guereza target 106 genomic scaffold
          Length = 481828

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     tattataaatatgacacagg 40
              ||||||||||||||||||||
Sbjct: 378209 tattataaatatgacacagg 378190

>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2,
              complete sequence
          Length = 180976

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttgtatatattataaatatg 33
              ||||||||||||||||||||
Sbjct: 116822 ttgtatatattataaatatg 116841

>ref|XM_964469.1| PREDICTED: Tribolium castaneum similar to CG11926-PA (LOC658056),
            mRNA
          Length = 1723

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   ttgtatatattataaatatg 33
            ||||||||||||||||||||
Sbjct: 1599 ttgtatatattataaatatg 1618

>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4
          Length = 347050

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ttgtatatattataaatatg 33
              ||||||||||||||||||||
Sbjct: 140132 ttgtatatattataaatatg 140151

>emb|AL672217.6| Zebrafish DNA sequence from clone BUSM1-72B14 Contains the gdf8 gene
             for growth differentiation factor 8, a novel gene similar
             to PSML1 (postmeiotic segregation increased 1-like
             protein), two novel genes, the 3' part of a novel gene, a
             novel glycoprotease, a novel gene and two CpG islands,
             complete sequence
          Length = 117322

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    acaggtgttgtatatgtgta 55
             ||||||||||||||||||||
Sbjct: 83381 acaggtgttgtatatgtgta 83400

>emb|CR318584.8| Zebrafish DNA sequence from clone CH211-123F21 in linkage group 13,
              complete sequence
          Length = 138029

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     acaggtgttgtatatgtgta 55
              ||||||||||||||||||||
Sbjct: 119128 acaggtgttgtatatgtgta 119147

>emb|CR382380.5| Zebrafish DNA sequence from clone DKEY-112M3 in linkage group 14,
             complete sequence
          Length = 84200

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atcatagagaagaaaattat 135
             ||||||||||||||||||||
Sbjct: 30579 atcatagagaagaaaattat 30560

>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5,
             complete sequence
          Length = 204925

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    ttgttgtatatattataaatatga 34
             |||||||||||||| |||||||||
Sbjct: 79540 ttgttgtatatattttaaatatga 79563

>gb|AC012236.12| Homo sapiens chromosome 15, clone RP11-16E12, complete sequence
          Length = 173729

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    tacatatgcatatatgctccacaa 94
             ||||||||||||||| ||||||||
Sbjct: 56450 tacatatgcatatattctccacaa 56427

>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14,
             complete sequence
          Length = 181055

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    ttacatatgcatatatgctc 89
             ||||||||||||||||||||
Sbjct: 42670 ttacatatgcatatatgctc 42651

>gb|AC090695.14| Homo sapiens chromosome 15, clone RP11-192M23, complete sequence
          Length = 173632

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    taaatatgacacaggtgttg 45
             ||||||||||||||||||||
Sbjct: 80155 taaatatgacacaggtgttg 80136

>gb|AF238281.1| Arabidopsis thaliana trehalose-6-phosphate synthase 3 gene, promoter
            region
          Length = 1943

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  caaaagtgaagttcacaaaa 182
            ||||||||||||||||||||
Sbjct: 1290 caaaagtgaagttcacaaaa 1271

>emb|AL591593.11| Zebrafish DNA sequence from clone BUSM1-211O13, complete sequence
          Length = 121251

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   acaggtgttgtatatgtgta 55
            ||||||||||||||||||||
Sbjct: 6541 acaggtgttgtatatgtgta 6560

>dbj|AP002791.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-843F11, complete
              sequences
          Length = 172914

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     tatatattataaatatgaca 36
              ||||||||||||||||||||
Sbjct: 154751 tatatattataaatatgaca 154732

>emb|AL954341.14| Mouse DNA sequence from clone RP23-213D14 on chromosome 2, complete
             sequence
          Length = 178273

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tgtatatattataaatatga 34
             ||||||||||||||||||||
Sbjct: 38941 tgtatatattataaatatga 38960

>gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence
          Length = 116177

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   caaaagtgaagttcacaaaa 182
             ||||||||||||||||||||
Sbjct: 20673 caaaagtgaagttcacaaaa 20692


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,775,273
Number of Sequences: 3902068
Number of extensions: 2775273
Number of successful extensions: 67809
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67743
Number of HSP's gapped (non-prelim): 57
length of query: 229
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 207
effective length of database: 17,147,199,772
effective search space: 3549470352804
effective search space used: 3549470352804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)