ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd14a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3351 Score = 260 bits (131), Expect = 5e-66 Identities = 245/283 (86%) Strand = Plus / Minus Query: 374 ctagttgtagatctttacaggcctctcaaacgaatggcggttctggttagcactatgtgc 433 |||||| |||||||||||||| |||||||| |||||||||||||| ||||| | |||| Sbjct: 3351 ctagttatagatctttacaggtctctcaaatgaatggcggttctgattagcgttgtgtgt 3292 Query: 434 ctttcttggcgctgtgtctgggtgctccagtccaagatactgctcccaagctccatacat 493 |||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 3291 ctttctaggagccgtgtctggatgctccagtccaagatattgctcccaagctccatacat 3232 Query: 494 gtttctctgaaatctcgtagctacactatcagaatcttcaaaatagtctggccggccaag 553 ||||| ||||||||| | ||||||| | || ||||| |||||||| ||||| || ||||| Sbjct: 3231 gtttcgctgaaatcttgaagctacagtgtctgaatcctcaaaataatctgggcgaccaag 3172 Query: 554 ggatatgtatgcaaatttccacttggagaaatcctcttctgagaccttaagctttttctg 613 |||||||| |||||||||||||| ||||||||||| |||| || || || |||||||| Sbjct: 3171 tgatatgtaggcaaatttccactttgagaaatcctcatctggaacttttagttttttctg 3112 Query: 614 taaacgttctttgatagaagataaggtctcatcctcacgaata 656 || |||||||| |||||||| | ||| ||||||||||||||| Sbjct: 3111 tatccgttctttaatagaagaaagggtttcatcctcacgaata 3069
>gb|AY111375.1| Zea mays CL38709_1 mRNA sequence Length = 1037 Score = 254 bits (128), Expect = 3e-64 Identities = 203/228 (89%) Strand = Plus / Plus Query: 429 tgtgcctttcttggcgctgtgtctgggtgctccagtccaagatactgctcccaagctcca 488 |||||||| || || ||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 662 tgtgccttcctaggagctgtgtctggatgttccagtccaagatactgctcccaagctcca 721 Query: 489 tacatgtttctctgaaatctcgtagctacactatcagaatcttcaaaatagtctggccgg 548 |||||||||||||||||| | ||||||| |||| |||||||||||||||||||| || Sbjct: 722 tacatgtttctctgaaattttaaagctacagtatctgaatcttcaaaatagtctggacga 781 Query: 549 ccaagggatatgtatgcaaatttccacttggagaaatcctcttctgagaccttaagcttt 608 ||||| || ||||||||||| |||||||| ||||||||||| |||| | |||||||||| Sbjct: 782 ccaagtgaaatgtatgcaaacttccactttgagaaatcctcatctggaatcttaagcttt 841 Query: 609 ttctgtaaacgttctttgatagaagataaggtctcatcctcacgaata 656 |||||| ||| |||||||||||||||| ||||||||||||||||||| Sbjct: 842 ctctgtatacgctctttgatagaagatagggtctcatcctcacgaata 889
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 429 tgtgcctttcttggcgctgtgtctgggtgctccagtccaagatactgctcccaagctcca 488 |||| |||||| || || |||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 3455982 tgtgtctttctaggagccgtgtctggatgctccagtccaagatattgctcccaagctcca 3455923 Query: 489 tacatgtttc 498 |||||||||| Sbjct: 3455922 tacatgtttc 3455913 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 372 gtctagttgtagatctttacaggcctctcaaacgaatggcggttctg 418 |||||||| |||||||||||||| |||||||| |||||||||||||| Sbjct: 3456181 gtctagttatagatctttacaggtctctcaaatgaatggcggttctg 3456135 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 500 ctgaaatctcgtagctacactatcagaatcttcaaaatagtctggccggccaagggatat 559 ||||||||| | ||||||| | || ||||| |||||||| ||||| || ||||| ||||| Sbjct: 3455827 ctgaaatcttgaagctacagtgtctgaatcctcaaaataatctgggcgaccaagtgatat 3455768 Query: 560 gtatgcaaatttccact 576 ||| ||||||||||||| Sbjct: 3455767 gtaggcaaatttccact 3455751 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 579 gagaaatcctcttctgagaccttaagctttttctgtaaacgttctttgatagaagataag 638 ||||||||||| |||| || || || |||||||||| |||||||| |||||||| | | Sbjct: 3454750 gagaaatcctcatctggaacttttagttttttctgtatccgttctttaatagaagaaagg 3454691 Query: 639 gtctcatcctcacgaata 656 || ||||||||||||||| Sbjct: 3454690 gtttcatcctcacgaata 3454673 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 256 tgagcaaccagtcctgccatca--tatggtacacgatttattcaagccagca 305 ||||||||| ||||| |||||| |||||||||| ||||||||||||||||| Sbjct: 3456287 tgagcaacccgtcctaccatcaattatggtacacaatttattcaagccagca 3456236 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 catcatcaacaactctgcacc 69 ||||||||||||||||||||| Sbjct: 5684537 catcatcaacaactctgcacc 5684517
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 429 tgtgcctttcttggcgctgtgtctgggtgctccagtccaagatactgctcccaagctcca 488 |||| |||||| || || |||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 95802 tgtgtctttctaggagccgtgtctggatgctccagtccaagatattgctcccaagctcca 95743 Query: 489 tacatgtttc 498 |||||||||| Sbjct: 95742 tacatgtttc 95733 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 372 gtctagttgtagatctttacaggcctctcaaacgaatggcggttctg 418 |||||||| |||||||||||||| |||||||| |||||||||||||| Sbjct: 96001 gtctagttatagatctttacaggtctctcaaatgaatggcggttctg 95955 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 500 ctgaaatctcgtagctacactatcagaatcttcaaaatagtctggccggccaagggatat 559 ||||||||| | ||||||| | || ||||| |||||||| ||||| || ||||| ||||| Sbjct: 95647 ctgaaatcttgaagctacagtgtctgaatcctcaaaataatctgggcgaccaagtgatat 95588 Query: 560 gtatgcaaatttccact 576 ||| ||||||||||||| Sbjct: 95587 gtaggcaaatttccact 95571 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 579 gagaaatcctcttctgagaccttaagctttttctgtaaacgttctttgatagaagataag 638 ||||||||||| |||| || || || |||||||||| |||||||| |||||||| | | Sbjct: 94570 gagaaatcctcatctggaacttttagttttttctgtatccgttctttaatagaagaaagg 94511 Query: 639 gtctcatcctcacgaata 656 || ||||||||||||||| Sbjct: 94510 gtttcatcctcacgaata 94493 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 256 tgagcaaccagtcctgccatca--tatggtacacgatttattcaagccagca 305 ||||||||| ||||| |||||| |||||||||| ||||||||||||||||| Sbjct: 96107 tgagcaacccgtcctaccatcaattatggtacacaatttattcaagccagca 96056
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 456 tgctccagtccaagatactgctcccaagctccata 490 ||||||| |||||||||||||||||||| ||||| Sbjct: 5248 tgctccaagccaagatactgctcccaagcaccata 5214
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 456 tgctccagtccaagatactgctcccaagctccata 490 ||||||| ||||||||||||||||| |||||||| Sbjct: 83038 tgctccaaaccaagatactgctcccaggctccata 83072
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 456 tgctccagtccaagatactgctcccaagctccata 490 ||||||| ||||||||||||||||| |||||||| Sbjct: 20648030 tgctccaaaccaagatactgctcccaggctccata 20648064
>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full insert sequence Length = 3975 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 456 tgctccagtccaagatactgctcccaagctccata 490 ||||||| ||||||||||||||||| |||||||| Sbjct: 3266 tgctccaaaccaagatactgctcccaggctccata 3232
>dbj|AK059481.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F05, full insert sequence Length = 1098 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 456 tgctccagtccaagatactgctcccaagctccata 490 ||||||| ||||||||||||||||| |||||||| Sbjct: 429 tgctccaaaccaagatactgctcccaggctccata 395
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 456 tgctccagtccaagatactgctcccaagctccata 490 ||||||| ||||||||||||||||| |||||||| Sbjct: 20958265 tgctccaaaccaagatactgctcccaggctccata 20958299
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546, complete sequence Length = 107979 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 456 tgctccagtccaagatactgctcccaagctccata 490 ||||||| |||||||||||||||||||| ||||| Sbjct: 76930 tgctccaaaccaagatactgctcccaagcaccata 76964
>emb|BX649520.20| Zebrafish DNA sequence from clone DKEY-174E3 in linkage group 13, complete sequence Length = 219709 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 176 gttgggtcatctctgcaaaaactttatata 205 ||||||| | |||||||||||||||||||| Sbjct: 76164 gttgggtgagctctgcaaaaactttatata 76193
>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete sequence Length = 141216 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 465 ccaagatactgctcccaagctccata 490 |||||||||||||||||||| ||||| Sbjct: 45138 ccaagatactgctcccaagcaccata 45113
>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence Length = 198336 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 agaaaagaaaaacagcctcct 152 ||||||||||||||||||||| Sbjct: 39505 agaaaagaaaaacagcctcct 39525
>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence Length = 230184 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 agaaaagaaaaacagcctcct 152 ||||||||||||||||||||| Sbjct: 80686 agaaaagaaaaacagcctcct 80666
>ref|XM_863356.1| PREDICTED: Canis familiaris similar to SAC domain-containing protein 3, transcript variant 2 (LOC475023), mRNA Length = 2535 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 577 tggagaaatcctcttctgaga 597 ||||||||||||||||||||| Sbjct: 2111 tggagaaatcctcttctgaga 2091
>ref|XM_532259.2| PREDICTED: Canis familiaris similar to SAC domain-containing protein 3, transcript variant 1 (LOC475023), mRNA Length = 3040 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 577 tggagaaatcctcttctgaga 597 ||||||||||||||||||||| Sbjct: 2616 tggagaaatcctcttctgaga 2596
>gb|AC116950.5| Mus musculus BAC clone RP23-56K4 from 15, complete sequence Length = 225940 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 gaaaagaaaaacagcctcctc 153 ||||||||||||||||||||| Sbjct: 203855 gaaaagaaaaacagcctcctc 203835
>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0431A02 Length = 165038 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 catcatcaacaactctgcacc 69 ||||||||||||||||||||| Sbjct: 146229 catcatcaacaactctgcacc 146209
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence Length = 168439 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 agaaaagaaaaacagcctcct 152 ||||||||||||||||||||| Sbjct: 127593 agaaaagaaaaacagcctcct 127613
>emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chromosome X, complete sequence Length = 187770 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 aagaaaagaaaaacagcctcc 151 ||||||||||||||||||||| Sbjct: 129461 aagaaaagaaaaacagcctcc 129441
>gb|AF526127.1| Peromyscus maniculatus microsatellite BW4-1 sequence Length = 267 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aagaaaagaaaaacagcctc 150 |||||||||||||||||||| Sbjct: 169 aagaaaagaaaaacagcctc 150
>gb|AC099711.5| Mus musculus chromosome 15, clone RP23-397C11, complete sequence Length = 207144 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 actgtctagttgtagatctt 388 |||||||||||||||||||| Sbjct: 130077 actgtctagttgtagatctt 130096
>gb|AC164581.7| Mus musculus 10 BAC RP23-45O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199422 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 atatccagggcagagtgcgg 222 |||||||||||||||||||| Sbjct: 168091 atatccagggcagagtgcgg 168072
>emb|AL109935.39|HSJ1022P6 Human DNA sequence from clone RP5-1022P6 on chromosome 20 Contains the RPS18P1 gene for ribosomal protein S18 pseudogene 1, the gene for a novel protein (KIAA1434), an EIF4E (eukaryotic translation initiation factor 4E) pseudogene, three novel genes and two CpG islands, complete sequence Length = 178601 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aagaaaagaaaaacagcctc 150 |||||||||||||||||||| Sbjct: 142654 aagaaaagaaaaacagcctc 142673
>emb|AL031532.1|SPCC777 S.pombe chromosome III cosmid c777 Length = 29255 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggaagaaaagaaaaacagcc 148 |||||||||||||||||||| Sbjct: 13286 ggaagaaaagaaaaacagcc 13305
>emb|AL596264.13| Mouse DNA sequence from clone RP23-232G8 on chromosome 11 Contains a novel gene, complete sequence Length = 175724 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ctcacaactgtctagttgta 382 |||||||||||||||||||| Sbjct: 21378 ctcacaactgtctagttgta 21397
>emb|CR788244.9| Zebrafish DNA sequence from clone DKEY-254A16 in linkage group 18, complete sequence Length = 208154 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 aagggatatgtatgcaaatt 570 |||||||||||||||||||| Sbjct: 90480 aagggatatgtatgcaaatt 90461
>ref|NM_008571.1| Mus musculus mast cell protease 2 (Mcpt2), mRNA Length = 971 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 actttatatatccagggcag 215 |||||||||||||||||||| Sbjct: 750 actttatatatccagggcag 731
>dbj|AK133521.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA, RIKEN full-length enriched library, clone:5033416M10 product:mast cell protease 2, full insert sequence Length = 971 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 actttatatatccagggcag 215 |||||||||||||||||||| Sbjct: 751 actttatatatccagggcag 732
>gb|AC163646.2| Mus musculus BAC clone RP23-207D1 from chromosome 14, complete sequence Length = 185289 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 actttatatatccagggcag 215 |||||||||||||||||||| Sbjct: 20505 actttatatatccagggcag 20524
>emb|BX908749.6| Zebrafish DNA sequence from clone DKEY-247F18 in linkage group 18, complete sequence Length = 186014 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 aagggatatgtatgcaaatt 570 |||||||||||||||||||| Sbjct: 94295 aagggatatgtatgcaaatt 94276
>gb|AY007570.1| Mus musculus strain C57BL/6 mouse mast cell protease-2 mRNA, complete cds Length = 971 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 actttatatatccagggcag 215 |||||||||||||||||||| Sbjct: 750 actttatatatccagggcag 731
>ref|NM_001023244.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC777.08c), partial mRNA Length = 1269 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggaagaaaagaaaaacagcc 148 |||||||||||||||||||| Sbjct: 906 ggaagaaaagaaaaacagcc 887
>dbj|AK015515.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930466K18 product:unclassifiable, full insert sequence Length = 908 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 atatccagggcagagtgcgg 222 |||||||||||||||||||| Sbjct: 443 atatccagggcagagtgcgg 462
>gb|AC120051.5| Homo sapiens chromosome 8, clone RP11-809L8, complete sequence Length = 200827 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 caaccagtcctgccatcata 279 |||||||||||||||||||| Sbjct: 94847 caaccagtcctgccatcata 94828
>gb|AC131153.2| Homo sapiens 3 BAC RP11-264F21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 126619 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 caagctccatacatgtttct 499 |||||||||||||||||||| Sbjct: 33075 caagctccatacatgtttct 33094
>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence Length = 148678 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 aagggatatgtatgcaaatt 570 |||||||||||||||||||| Sbjct: 27621 aagggatatgtatgcaaatt 27602
>dbj|AB053451.1| Sus scrofa DNA, constant regions and joining segments of T cell receptor alpha/delta chain Length = 131286 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcactcctgcttctcacaac 370 |||||||||||||||||||| Sbjct: 91614 tcactcctgcttctcacaac 91633
>gb|AC153949.3| Mus musculus 10 BAC RP24-366H8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145982 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 atatccagggcagagtgcgg 222 |||||||||||||||||||| Sbjct: 82915 atatccagggcagagtgcgg 82934
>gb|AY104559.1| Zea mays PCO133879 mRNA sequence Length = 962 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 554 ggatatgtatgcaaatttccacttggagaaatcctc 589 ||||||| |||||| |||||||||||||| ||||| Sbjct: 272 ggatatgaatgcaagcttccacttggagaagtcctc 237
>dbj|AP000892.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-94B1, complete sequence Length = 149843 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 agtccaagatactgctcccaagct 485 |||||||||| ||||||||||||| Sbjct: 30198 agtccaagatcctgctcccaagct 30221
>gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, complete sequence Length = 159923 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 agaaaagaaaaacagcctcc 151 |||||||||||||||||||| Sbjct: 3882 agaaaagaaaaacagcctcc 3863
>emb|CT030191.7| M.truncatula DNA sequence from clone MTH2-29E15 on chromosome 3, complete sequence Length = 107971 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 acatgtttctctgaaatctc 509 |||||||||||||||||||| Sbjct: 36264 acatgtttctctgaaatctc 36245
>gb|L08486.1|MUSSERPROA Mus musculus serine proteinase (MCP2) gene, exons 1-5 and complete cds Length = 4457 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 actttatatatccagggcag 215 |||||||||||||||||||| Sbjct: 3653 actttatatatccagggcag 3634
>gb|J05177.1|MUSPR2MC Mouse mast cell protease-2 (MMCP-2) mRNA, complete cds Length = 953 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 actttatatatccagggcag 215 |||||||||||||||||||| Sbjct: 732 actttatatatccagggcag 713 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,919,507 Number of Sequences: 3902068 Number of extensions: 6919507 Number of successful extensions: 142934 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142634 Number of HSP's gapped (non-prelim): 300 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
