Clone Name | rbasd13l04 |
---|---|
Clone Library Name | barley_pub |
>VPS16_MOUSE (Q920Q4) Vacuolar protein sorting 16 (mVPS16)| Length = 839 Score = 88.2 bits (217), Expect = 2e-17 Identities = 46/121 (38%), Positives = 72/121 (59%) Frame = -2 Query: 601 FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREK 422 F+ S+ DT+ T I+ G+ + A ++ +F++PDKR +WLK ALA + +W+ LE FS+ K Sbjct: 691 FLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSK 750 Query: 421 RPPGGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAYARLNMTDEAEKAASEANNGDE 242 + P GY PFVE C+ K EA KY ++ P ++ +A + +A + A E N E Sbjct: 751 KSPIGYLPFVEICMKQHNKHEAKKYASRV-GPEQKVKALLLVGDVAQAAEVAIEHRNETE 809 Query: 241 L 239 L Sbjct: 810 L 810
>VPS16_HUMAN (Q9H269) Vacuolar protein sorting 16 (hVPS16)| Length = 839 Score = 87.0 bits (214), Expect = 4e-17 Identities = 46/121 (38%), Positives = 71/121 (58%) Frame = -2 Query: 601 FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREK 422 F+ S+ DT+ T I+ G+ + A ++ +F++PDKR +WLK ALA + +W+ LE FS+ K Sbjct: 691 FLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSK 750 Query: 421 RPPGGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAYARLNMTDEAEKAASEANNGDE 242 + P GY PFVE C+ K EA KY ++ P ++ +A + +A A E N E Sbjct: 751 KSPIGYLPFVEICMKQHNKYEAKKYASRV-GPEQKVKALLLVGDVAQAADVAIEHRNEAE 809 Query: 241 L 239 L Sbjct: 810 L 810
>VPS16_SCHPO (Q9UT38) Probable vacuolar protein sorting 16| Length = 835 Score = 79.0 bits (193), Expect = 1e-14 Identities = 44/147 (29%), Positives = 83/147 (56%), Gaps = 5/147 (3%) Frame = -2 Query: 601 FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSRE- 425 FVG +V++ + I + + A K++S+F++P+KR+ WLK AL + +W +E ++ Sbjct: 687 FVGLTVNEVVVKLIQINQTQRANKLRSDFQIPEKRFAWLKLRALVAIRDWVQIEQWAGSM 746 Query: 424 KRPPGGYKPFVEACIDAGQKMEAIKYIPKLTD--PGERSEAYARLNMTDEAEKAASEANN 251 +R P G++PFV + AG K EA KYIP+ T E+ + + ++ A + A+++ + Sbjct: 747 RRSPIGFEPFVTEILSAGNKKEAAKYIPRCTQLTTQEKVDMWVQVGDVKSASEEAAKSKS 806 Query: 250 GDELFGRLK--STLAQNTLIDTLRDRL 176 G L L+ T+ ++ + D+L Sbjct: 807 GSVLGDLLERVQTMPESRFVQNALDQL 833
>VPS16_YEAST (Q03308) Vacuolar protein sorting-associated protein VPS16| Length = 798 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/86 (25%), Positives = 40/86 (46%) Frame = -2 Query: 601 FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREK 422 F ++ T+ I G ++ ++ +FK+ +K+ Y LK L +D L F++ + Sbjct: 651 FTNMTLDQTLSKLIETGQDKQVKEIVKKFKISEKKLYHLKCKTLVEAKKFDELLQFAQSR 710 Query: 421 RPPGGYKPFVEACIDAGQKMEAIKYI 344 + P GY PF G +A Y+ Sbjct: 711 KSPIGYMPFYTYLKSRGHMDKASPYV 736
>YPD2_CAEEL (Q11182) Hypothetical protein C05D11.2| Length = 852 Score = 42.0 bits (97), Expect = 0.001 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Frame = -2 Query: 589 SVSDTIKTCIVMGNERAAV-KVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREKRPP 413 SV DT+ I M ++ A V ++K + ++ DK+ LA G + L + +KR P Sbjct: 712 SVRDTV---IEMAHDTAKVAQLKQQARLTDKQVLLWTIEGLAKKGKMEQLFDLA-QKRSP 767 Query: 412 GGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAYARLNMTDEAEKAASEANNGDEL 239 GY PFV+AC+ + E KY K+ + A+ + EA K A + + D L Sbjct: 768 IGYAPFVKACVRYKRLDEIKKYFAKVNGYPDLVAAHLAMKNYVEAAKLAYDRRDRDVL 825
>TXD11_HUMAN (Q6PKC3) Thioredoxin domain-containing protein 11 (EF-hand-binding| protein 1) Length = 985 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 221 YSGAEYSYRHATGSTIFPRNVLRY 150 +SG+ Y +RH S +FPR VL Y Sbjct: 315 HSGSVYLHRHFNTSLVFPREVLNY 338
>TRME_BUCMP (O51830) Probable tRNA modification GTPase trmE| Length = 453 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -3 Query: 426 RRDHQEAINLSWKHALMPVKKWKLSNISQN*QILVKDLR 310 RR H INL++ LM KKW IS+N ++L + LR Sbjct: 388 RRRHINQINLAYNEFLMAKKKW---IISKNIELLAESLR 423
>LONH_PYRAB (Q9UYC6) Putative protease La homolog (EC 3.4.21.-) [Contains: Pab| lon intein] Length = 998 Score = 29.6 bits (65), Expect = 7.5 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Frame = -2 Query: 427 EKRPPGGYKPFVEACIDAGQKMEAI-----KYIPKLTDPGERSEAYARLNMTDEAEKAAS 263 E P GG P +EA I+AG K I K + D E+ E + + E A Sbjct: 892 EVLPVGGVTPKIEAAIEAGIKKVIIPKANEKDVFLSPDKREKIEIIPVERIDEVLEVALV 951 Query: 262 EANNGDELFGRLKSTL 215 E+ EL R++ TL Sbjct: 952 ESEKKKELIKRIRETL 967
>NUSA_MYCTU (P0A5M2) Transcription elongation protein nusA| Length = 347 Score = 29.3 bits (64), Expect = 9.8 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 289 TDEAEKAASEANNGDELFGRLKSTLAQNTLIDTLRD 182 TDEA SE ++ E FGR+ +T A+ ++ RD Sbjct: 62 TDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRD 97
>NUSA_MYCBO (P0A5M3) Transcription elongation protein nusA| Length = 347 Score = 29.3 bits (64), Expect = 9.8 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 289 TDEAEKAASEANNGDELFGRLKSTLAQNTLIDTLRD 182 TDEA SE ++ E FGR+ +T A+ ++ RD Sbjct: 62 TDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRD 97
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 29.3 bits (64), Expect = 9.8 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = +3 Query: 429 LENVSKASQLPTVAKAHDF-------NQYHLLSGTLNSDFTLTAARSFPITIQVFIVSLT 587 ++N S L T+A+ + F N LLS +N+D T AA S IQ F+ S+T Sbjct: 683 VDNSSLLGSLCTIARQNRFFGTVVWSNATTLLSDFINNDPTSFAAISESGWIQAFLESVT 742 Query: 588 LEPTNI 605 P +I Sbjct: 743 NRPVSI 748 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,652,158 Number of Sequences: 219361 Number of extensions: 1879414 Number of successful extensions: 4906 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4904 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)