>VPS16_MOUSE (Q920Q4) Vacuolar protein sorting 16 (mVPS16)|
          Length = 839

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 46/121 (38%), Positives = 72/121 (59%)
 Frame = -2

Query: 601  FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREK 422
            F+  S+ DT+ T I+ G+ + A ++  +F++PDKR +WLK  ALA + +W+ LE FS+ K
Sbjct: 691  FLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSK 750

Query: 421  RPPGGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAYARLNMTDEAEKAASEANNGDE 242
            + P GY PFVE C+    K EA KY  ++  P ++ +A   +    +A + A E  N  E
Sbjct: 751  KSPIGYLPFVEICMKQHNKHEAKKYASRV-GPEQKVKALLLVGDVAQAAEVAIEHRNETE 809

Query: 241  L 239
            L
Sbjct: 810  L 810

>VPS16_HUMAN (Q9H269) Vacuolar protein sorting 16 (hVPS16)|
          Length = 839

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 46/121 (38%), Positives = 71/121 (58%)
 Frame = -2

Query: 601  FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREK 422
            F+  S+ DT+ T I+ G+ + A ++  +F++PDKR +WLK  ALA + +W+ LE FS+ K
Sbjct: 691  FLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSK 750

Query: 421  RPPGGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAYARLNMTDEAEKAASEANNGDE 242
            + P GY PFVE C+    K EA KY  ++  P ++ +A   +    +A   A E  N  E
Sbjct: 751  KSPIGYLPFVEICMKQHNKYEAKKYASRV-GPEQKVKALLLVGDVAQAADVAIEHRNEAE 809

Query: 241  L 239
            L
Sbjct: 810  L 810

>VPS16_SCHPO (Q9UT38) Probable vacuolar protein sorting 16|
          Length = 835

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 44/147 (29%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
 Frame = -2

Query: 601  FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSRE- 425
            FVG +V++ +   I +   + A K++S+F++P+KR+ WLK  AL  + +W  +E ++   
Sbjct: 687  FVGLTVNEVVVKLIQINQTQRANKLRSDFQIPEKRFAWLKLRALVAIRDWVQIEQWAGSM 746

Query: 424  KRPPGGYKPFVEACIDAGQKMEAIKYIPKLTD--PGERSEAYARLNMTDEAEKAASEANN 251
            +R P G++PFV   + AG K EA KYIP+ T     E+ + + ++     A + A+++ +
Sbjct: 747  RRSPIGFEPFVTEILSAGNKKEAAKYIPRCTQLTTQEKVDMWVQVGDVKSASEEAAKSKS 806

Query: 250  GDELFGRLK--STLAQNTLIDTLRDRL 176
            G  L   L+   T+ ++  +    D+L
Sbjct: 807  GSVLGDLLERVQTMPESRFVQNALDQL 833

>VPS16_YEAST (Q03308) Vacuolar protein sorting-associated protein VPS16|
          Length = 798

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 40/86 (46%)
 Frame = -2

Query: 601 FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREK 422
           F   ++  T+   I  G ++   ++  +FK+ +K+ Y LK   L     +D L  F++ +
Sbjct: 651 FTNMTLDQTLSKLIETGQDKQVKEIVKKFKISEKKLYHLKCKTLVEAKKFDELLQFAQSR 710

Query: 421 RPPGGYKPFVEACIDAGQKMEAIKYI 344
           + P GY PF       G   +A  Y+
Sbjct: 711 KSPIGYMPFYTYLKSRGHMDKASPYV 736

>YPD2_CAEEL (Q11182) Hypothetical protein C05D11.2|
          Length = 852

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = -2

Query: 589  SVSDTIKTCIVMGNERAAV-KVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREKRPP 413
            SV DT+   I M ++ A V ++K + ++ DK+        LA  G  + L   + +KR P
Sbjct: 712  SVRDTV---IEMAHDTAKVAQLKQQARLTDKQVLLWTIEGLAKKGKMEQLFDLA-QKRSP 767

Query: 412  GGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAYARLNMTDEAEKAASEANNGDEL 239
             GY PFV+AC+   +  E  KY  K+    +   A+  +    EA K A +  + D L
Sbjct: 768  IGYAPFVKACVRYKRLDEIKKYFAKVNGYPDLVAAHLAMKNYVEAAKLAYDRRDRDVL 825

>TXD11_HUMAN (Q6PKC3) Thioredoxin domain-containing protein 11 (EF-hand-binding|
           protein 1)
          Length = 985

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 221 YSGAEYSYRHATGSTIFPRNVLRY 150
           +SG+ Y +RH   S +FPR VL Y
Sbjct: 315 HSGSVYLHRHFNTSLVFPREVLNY 338

>TRME_BUCMP (O51830) Probable tRNA modification GTPase trmE|
          Length = 453

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 426 RRDHQEAINLSWKHALMPVKKWKLSNISQN*QILVKDLR 310
           RR H   INL++   LM  KKW    IS+N ++L + LR
Sbjct: 388 RRRHINQINLAYNEFLMAKKKW---IISKNIELLAESLR 423

>LONH_PYRAB (Q9UYC6) Putative protease La homolog (EC 3.4.21.-) [Contains: Pab|
            lon intein]
          Length = 998

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = -2

Query: 427  EKRPPGGYKPFVEACIDAGQKMEAI-----KYIPKLTDPGERSEAYARLNMTDEAEKAAS 263
            E  P GG  P +EA I+AG K   I     K +    D  E+ E      + +  E A  
Sbjct: 892  EVLPVGGVTPKIEAAIEAGIKKVIIPKANEKDVFLSPDKREKIEIIPVERIDEVLEVALV 951

Query: 262  EANNGDELFGRLKSTL 215
            E+    EL  R++ TL
Sbjct: 952  ESEKKKELIKRIRETL 967

>NUSA_MYCTU (P0A5M2) Transcription elongation protein nusA|
          Length = 347

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 289 TDEAEKAASEANNGDELFGRLKSTLAQNTLIDTLRD 182
           TDEA    SE ++  E FGR+ +T A+  ++   RD
Sbjct: 62  TDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRD 97

>NUSA_MYCBO (P0A5M3) Transcription elongation protein nusA|
          Length = 347

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 289 TDEAEKAASEANNGDELFGRLKSTLAQNTLIDTLRD 182
           TDEA    SE ++  E FGR+ +T A+  ++   RD
Sbjct: 62  TDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRD 97

>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +3

Query: 429 LENVSKASQLPTVAKAHDF-------NQYHLLSGTLNSDFTLTAARSFPITIQVFIVSLT 587
           ++N S    L T+A+ + F       N   LLS  +N+D T  AA S    IQ F+ S+T
Sbjct: 683 VDNSSLLGSLCTIARQNRFFGTVVWSNATTLLSDFINNDPTSFAAISESGWIQAFLESVT 742

Query: 588 LEPTNI 605
             P +I
Sbjct: 743 NRPVSI 748


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,652,158
Number of Sequences: 219361
Number of extensions: 1879414
Number of successful extensions: 4906
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4904
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)