ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13l02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NAC22_ARATH (Q84TE6) NAC domain-containing protein 21/22 (ANAC02... 37 0.056
2WOX1_ARATH (Q6X7K0) WUSCHEL-related homeobox 1 (PFS2-like protein) 31 3.1
3CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding... 31 3.1
4IF2G_HALSA (Q9HNK9) Translation initiation factor 2 gamma subuni... 30 5.2
5NAC2_ARATH (Q39013) NAC domain-containing protein 2 (ANAC002) 30 5.2
6RHBT2_MOUSE (Q91V93) Rho-related BTB domain-containing protein 2... 30 6.9
7PHNC_CAUCR (Q9AB70) Phosphonates import ATP-binding protein phnC... 30 6.9
8PTFLB_ECOLI (P32154) Fructose-like PTS system EIIBC component [I... 30 9.0

>NAC22_ARATH (Q84TE6) NAC domain-containing protein 21/22 (ANAC021) (ANAC022)|
          Length = 324

 Score = 37.0 bits (84), Expect = 0.056
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = -3

Query: 607 KEDWVLCRVFYKSRTTSPRPPSEEACTFFTELDLPTMPPLA-PLI------GAYIAFDSG 449
           KEDWVLCRVF+K+        +  +C  F E    ++PPL  P I       +Y++ D  
Sbjct: 160 KEDWVLCRVFHKNTEGVICRDNMGSC--FDETASASLPPLMDPYINFDQEPSSYLSDDHH 217

Query: 448 TTMNTTEQVSCFSGL 404
             +N  E V CFS L
Sbjct: 218 YIIN--EHVPCFSNL 230



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>WOX1_ARATH (Q6X7K0) WUSCHEL-related homeobox 1 (PFS2-like protein)|
          Length = 350

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 594 CYAGCSTRAEQPAQGHHLKKPAH 526
           C  GC T+ E+P++ +HL++PA+
Sbjct: 178 CSVGCDTQPEKPSRDYHLEEPAN 200



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>CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 3)
           (AGAP-3) (MR1-interacting protein) (MRIP-1)
           (CRAM-associated GTPase) (CRAG)
          Length = 875

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = -1

Query: 417 ASPACRHYRSGDR*ASGTCWAGTTLRRRPSGQH*ATCQVTTIPSWSCLQTGARRTACHRC 238
           AS A  H    +R  S + WAG     RP G H  +C V++   WS   T       H  
Sbjct: 468 ASSASLH---SERPLSSSAWAGP----RPEGLHQRSCSVSSADQWSEATTSLPPGMQHPA 520

Query: 237 GHPSESL 217
             P+E L
Sbjct: 521 SGPAEVL 527



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>IF2G_HALSA (Q9HNK9) Translation initiation factor 2 gamma subunit|
           (eIF-2-gamma) (aIF2-gamma)
          Length = 414

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 401 RQAGEAGHLLGGVHRGAAVEGDVGADEGREGRHSRKVQLGEECAGFFRWWP 553
           R   E G LLGGV  G+ V+G++ A +  E R  R+V+ G    G   W P
Sbjct: 223 RPGTEWGGLLGGVIGGSLVDGELEAGDELELRPGREVEEG----GKTEWRP 269



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>NAC2_ARATH (Q39013) NAC domain-containing protein 2 (ANAC002)|
          Length = 289

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
 Frame = -3

Query: 604 EDWVLCRVFYKSRTTSPRPPSE---------EACTFFTELDLPTMPPLAPLIGAYIAFDS 452
           +DWVLCR++ K   T  R P           E     TE+ +P  P        +   DS
Sbjct: 148 DDWVLCRIYNKKGATERRGPPPPVVYGDEIMEEKPKVTEMVMPPPPQQTSEFAYFDTSDS 207

Query: 451 GTTMNTTEQVSC 416
              ++TT+  SC
Sbjct: 208 VPKLHTTDS-SC 218



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>RHBT2_MOUSE (Q91V93) Rho-related BTB domain-containing protein 2 (Deleted in|
           breast cancer 2 gene protein homolog)
          Length = 728

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 380 GELRGPAGLGQP*EEGHQDSTEQH 309
           GEL GP+G G P  E H+   EQH
Sbjct: 303 GELGGPSGSGGPRPEDHRSHPEQH 326



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>PHNC_CAUCR (Q9AB70) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)|
          Length = 264

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -2

Query: 605 GRLGAMQGVLQEQNNQPKATI*RSLHILHRAGPSDYAAPRA 483
           GR+  +QG+L      PK T   ++  LHR G S+YAA RA
Sbjct: 114 GRIPVVQGLL---GWWPKETRDATMAALHRVGVSEYAAQRA 151



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>PTFLB_ECOLI (P32154) Fructose-like PTS system EIIBC component [Includes:|
           Fructose-like phosphotransferase enzyme IIB component
           (EC 2.7.1.69) (PTS system fructose-like EIIB component);
           Fructose-like permease IIC component (PTS system
           fructose-like EIIC co
          Length = 483

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 508 LPTMPP-----LAPLIGAYIAFDSGTTMNTTEQVSCFS 410
           L T+PP      A L+GA +AFD G  +N T    CFS
Sbjct: 296 LNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFS 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,206,864
Number of Sequences: 219361
Number of extensions: 1923982
Number of successful extensions: 6240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6235
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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