No.
Definition
Score (bits)
E Value
1 emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 gen...
86
2e-13
2 emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon...
86
2e-13
3 ref|XM_473911.1| Oryza sativa (japonica cultivar-group), predic...
78
4e-11
4 ref|XM_480565.1| Oryza sativa (japonica cultivar-group), mRNA
76
2e-10
5 dbj|AK120197.1| Oryza sativa (japonica cultivar-group) cDNA clon...
76
2e-10
6 emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,...
70
1e-08
7 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
70
1e-08
8 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
9 dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
10 dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
11 dbj|AK105596.1| Oryza sativa (japonica cultivar-group) cDNA clon...
68
4e-08
12 gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...
50
0.010
13 ref|XM_466817.1| Oryza sativa (japonica cultivar-group), mRNA
48
0.038
14 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
48
0.038
15 dbj|AP006847.2| Oryza sativa (japonica cultivar-group) genomic D...
48
0.038
16 dbj|AK105122.1| Oryza sativa (japonica cultivar-group) cDNA clon...
48
0.038
17 gb|BT009242.1| Triticum aestivum clone wlk1.pk0013.f1:fis, full ...
44
0.60
18 gb|CP000249.1| Frankia sp. CcI3, complete genome
44
0.60
19 ref|NM_205434.1| Gallus gallus homeobox protein hoxd13 (LOC39641...
44
0.60
20 gb|L09550.1|CHKHOXD13A Chicken homeobox protein hoxd13 mRNA, com...
44
0.60
21 gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer...
42
2.4
22 gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
42
2.4
23 gb|AC098970.2| Homo sapiens chromosome 3 clone RP11-30G4, comple...
42
2.4
24 dbj|AP000600.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...
42
2.4
25 emb|BX255920.4| Zebrafish DNA sequence from clone CH211-155K23 i...
42
2.4
26 emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
42
2.4
27 gb|AY845351.1| Candida lignicola 18S ribosomal RNA gene, partial...
42
2.4
28 dbj|AP003029.2| Homo sapiens genomic DNA, chromosome 11q, clone:...
42
2.4
29 gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
40
9.4
30 gb|AY636119.1| Sardinops sagax sagax microsatellite SarB-H04F se...
40
9.4
31 ref|NM_187662.1| Oryza sativa (japonica cultivar-group), predic...
40
9.4
32 ref|XM_464228.1| Oryza sativa (japonica cultivar-group), mRNA
40
9.4
33 gb|AC166161.2| Mus musculus BAC clone RP23-467M7 from chromosome...
40
9.4
34 gb|AC011250.6| Drosophila melanogaster clone BACR21B19, complete...
40
9.4
35 ref|XM_417312.1| PREDICTED: Gallus gallus similar to retinoblast...
40
9.4
36 gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome...
40
9.4
37 gb|BC089435.1| Homo sapiens ADAM metallopeptidase with thrombosp...
40
9.4
38 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
9.4
39 gb|AC114005.5| Mus musculus BAC clone RP23-179L18 from 8, comple...
40
9.4
40 emb|CR723332.2|CNS0GL2I Tetraodon nigroviridis full-length cDNA
40
9.4
41 gb|AC118230.6| Mus musculus chromosome 10, clone RP23-462F16, co...
40
9.4
42 emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in...
40
9.4
43 gb|AE014820.1| Plasmodium falciparum 3D7 chromosome 14 section 5...
40
9.4
44 emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on ch...
40
9.4
45 emb|AL136451.17| Human DNA sequence from clone RP11-162M1 on chr...
40
9.4
46 gb|BC059362.1| Homo sapiens ral guanine nucleotide dissociation ...
40
9.4
47 gb|AC145458.3| Cicer arietinum strain FLIP84-92C clone gl1-4n10,...
40
9.4
48 ref|NM_007037.3| Homo sapiens ADAM metallopeptidase with thrombo...
40
9.4
49 ref|NM_001038709.1| Drosophila melanogaster pangolin CG17964-RI,...
40
9.4
50 gb|AC010915.8| Drosophila melanogaster, chromosome 4, region 101...
40
9.4
51 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
52 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
53 gb|AC078797.20| Homo sapiens 3 BAC RP11-125E8 (Roswell Park Canc...
40
9.4
54 dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
40
9.4
55 dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
56 dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
57 gb|BT021431.1| Drosophila melanogaster GH23203 full insert cDNA
40
9.4
58 dbj|AK070416.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.4
59 gb|AF060153.1|AF060153 Homo sapiens METH2 protein (METH2) mRNA, ...
40
9.4
60 gb|AE003845.4| Drosophila melanogaster chromosome 4, section 1 o...
40
9.4
61 gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...
40
9.4
62 gb|AC000395.1|AC000395 Genomic sequence from Human 9q34, complet...
40
9.4
63 gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complet...
40
9.4
64 dbj|AP006409.1| Lotus japonicus genomic DNA, chromosome 5, clone...
40
9.4
65 emb|Y13362.1|MMRAB7PRO Mus musculus Rab7 gene exon 1
40
9.4
66 emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chro...
40
9.4
67 gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome...
40
9.4
68 emb|AL627393.13| Mouse DNA sequence from clone RP23-154M2 on chr...
40
9.4
69 dbj|AP002986.2| Homo sapiens genomic DNA, chromosome 11q, clone:...
40
9.4
>ref|XM_480565.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 1312
Score = 75.8 bits (38), Expect = 2e-10
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 537 tcttcagatggtggccttgggctggttgttctgctcttgtagaacaccctgcatagcacc 596
|||||||||| ||| ||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 650 tcttcagatgatgggcttggaattgtttgtctggtcttgtagaacaccctgcatagcacc 591
Query: 597 cagtcttccttgag 610
||||| ||||||||
Sbjct: 590 cagtcctccttgag 577
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 398 tgccggcaggccggagaagcaggacacttgctcg 431
||||||||||||||||||||||||||||||||||
Sbjct: 804 tgccggcaggccggagaagcaggacacttgctcg 771
Score = 48.1 bits (24), Expect = 0.038
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 451 cgctgtcgaaggcgatgtaggcgccgatgaggggcg 486
|||| ||||||||||||||||| ||||||||||||
Sbjct: 736 cgctatcgaaggcgatgtaggcatcgatgaggggcg 701
Score = 42.1 bits (21), Expect = 2.4
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 14 tcctatgtacagatgctatatcaagcca-tttcactaatctactg 57
|||||||||||||| ||| | ||||||| |||||||| |||||||
Sbjct: 1222 tcctatgtacagattctacaccaagccattttcactactctactg 1178
>dbj|AK120197.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013036M14, full
insert sequence
Length = 1313
Score = 75.8 bits (38), Expect = 2e-10
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 537 tcttcagatggtggccttgggctggttgttctgctcttgtagaacaccctgcatagcacc 596
|||||||||| ||| ||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 651 tcttcagatgatgggcttggaattgtttgtctggtcttgtagaacaccctgcatagcacc 592
Query: 597 cagtcttccttgag 610
||||| ||||||||
Sbjct: 591 cagtcctccttgag 578
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 398 tgccggcaggccggagaagcaggacacttgctcg 431
||||||||||||||||||||||||||||||||||
Sbjct: 805 tgccggcaggccggagaagcaggacacttgctcg 772
Score = 48.1 bits (24), Expect = 0.038
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 451 cgctgtcgaaggcgatgtaggcgccgatgaggggcg 486
|||| ||||||||||||||||| ||||||||||||
Sbjct: 737 cgctatcgaaggcgatgtaggcatcgatgaggggcg 702
Score = 42.1 bits (21), Expect = 2.4
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 14 tcctatgtacagatgctatatcaagcca-tttcactaatctactg 57
|||||||||||||| ||| | ||||||| |||||||| |||||||
Sbjct: 1223 tcctatgtacagattctacaccaagccattttcactactctactg 1179
>dbj|AP008214.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 537 tcttcagatggtggccttgggctggttgttctgctcttgtagaacaccctgcatagcacc 596
|||||||||| ||| ||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 5841186 tcttcagatgatgggcttggaattgtttgtctggtcttgtagaacaccctgcatagcacc 5841245
Query: 597 cagtcttcct 606
||||| ||||
Sbjct: 5841246 cagtcctcct 5841255
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 398 tgccggcaggccggagaagcaggacacttgctcg 431
||||||||||||||||||||||||||||||||||
Sbjct: 5841032 tgccggcaggccggagaagcaggacacttgctcg 5841065
Score = 48.1 bits (24), Expect = 0.038
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 451 cgctgtcgaaggcgatgtaggcgccgatgaggggcg 486
|||| ||||||||||||||||| ||||||||||||
Sbjct: 5841100 cgctatcgaaggcgatgtaggcatcgatgaggggcg 5841135
Score = 42.1 bits (21), Expect = 2.4
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 14 tcctatgtacagatgctatatcaagcca-tttcactaatctactg 57
|||||||||||||| ||| | ||||||| |||||||| |||||||
Sbjct: 5840614 tcctatgtacagattctacaccaagccattttcactactctactg 5840658
>dbj|AP005442.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0073I05
Length = 182291
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 537 tcttcagatggtggccttgggctggttgttctgctcttgtagaacaccctgcatagcacc 596
|||||||||| ||| ||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 28296 tcttcagatgatgggcttggaattgtttgtctggtcttgtagaacaccctgcatagcacc 28355
Query: 597 cagtcttcct 606
||||| ||||
Sbjct: 28356 cagtcctcct 28365
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 398 tgccggcaggccggagaagcaggacacttgctcg 431
||||||||||||||||||||||||||||||||||
Sbjct: 28142 tgccggcaggccggagaagcaggacacttgctcg 28175
Score = 48.1 bits (24), Expect = 0.038
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 451 cgctgtcgaaggcgatgtaggcgccgatgaggggcg 486
|||| ||||||||||||||||| ||||||||||||
Sbjct: 28210 cgctatcgaaggcgatgtaggcatcgatgaggggcg 28245
Score = 42.1 bits (21), Expect = 2.4
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 14 tcctatgtacagatgctatatcaagcca-tttcactaatctactg 57
|||||||||||||| ||| | ||||||| |||||||| |||||||
Sbjct: 27724 tcctatgtacagattctacaccaagccattttcactactctactg 27768
>dbj|AP004589.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0556A11
Length = 138096
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 537 tcttcagatggtggccttgggctggttgttctgctcttgtagaacaccctgcatagcacc 596
|||||||||| ||| ||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 95331 tcttcagatgatgggcttggaattgtttgtctggtcttgtagaacaccctgcatagcacc 95390
Query: 597 cagtcttcct 606
||||| ||||
Sbjct: 95391 cagtcctcct 95400
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 398 tgccggcaggccggagaagcaggacacttgctcg 431
||||||||||||||||||||||||||||||||||
Sbjct: 95177 tgccggcaggccggagaagcaggacacttgctcg 95210
Score = 48.1 bits (24), Expect = 0.038
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 451 cgctgtcgaaggcgatgtaggcgccgatgaggggcg 486
|||| ||||||||||||||||| ||||||||||||
Sbjct: 95245 cgctatcgaaggcgatgtaggcatcgatgaggggcg 95280
Score = 42.1 bits (21), Expect = 2.4
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 14 tcctatgtacagatgctatatcaagcca-tttcactaatctactg 57
|||||||||||||| ||| | ||||||| |||||||| |||||||
Sbjct: 94759 tcctatgtacagattctacaccaagccattttcactactctactg 94803
>dbj|AK105596.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A01, full
insert sequence
Length = 1779
Score = 67.9 bits (34), Expect = 4e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 398 tgccggcaggccggagaagcaggacacttgctcg 431
||||||||||||||||||||||||||||||||||
Sbjct: 1269 tgccggcaggccggagaagcaggacacttgctcg 1236
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 537 tcttcagatggtggccttgggctggttgttctgctcttgtagaacaccctgcatagcacc 596
|||||||||| ||| ||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 1115 tcttcagatgatgggcttggaattgtttgtctggtcttgtagaacaccctgcatagcacc 1056
Query: 597 cagtcttcct 606
||||| ||||
Sbjct: 1055 cagtcctcct 1046
Score = 48.1 bits (24), Expect = 0.038
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 451 cgctgtcgaaggcgatgtaggcgccgatgaggggcg 486
|||| ||||||||||||||||| ||||||||||||
Sbjct: 1201 cgctatcgaaggcgatgtaggcatcgatgaggggcg 1166
Score = 42.1 bits (21), Expect = 2.4
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 14 tcctatgtacagatgctatatcaagcca-tttcactaatctactg 57
|||||||||||||| ||| | ||||||| |||||||| |||||||
Sbjct: 1687 tcctatgtacagattctacaccaagccattttcactactctactg 1643
>emb|AL162417.23 | Human DNA sequence from clone RP11-326L24 on chromosome 9q34.13-34.3
Contains the GTF3C5 gene for general transcription factor
IIIC polypeptide 5 63kDa, the CEL gene for carboxyl ester
lipase (bile salt-stimulated lipase), the CELP gene for
carboxyl ester lipase pseudogene, the RALGDS gene for ral
guanine nucleotide dissociation stimulator, the gene for
Forssman glycolipid synthetase (FS), three novel genes and
six CpG islands, complete sequence
Length = 152863
Score = 40.1 bits (20), Expect = 9.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 625 cgggggcggcggcgcggccc 644
||||||||||||||||||||
Sbjct: 100006 cgggggcggcggcgcggccc 100025
>dbj|AP002986.2 | Homo sapiens genomic DNA, chromosome 11q, clone:RP11-121M22, complete
sequence
Length = 157963
Score = 40.1 bits (20), Expect = 9.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 618 ctcgcctcgggggcggcggcgcgg 641
|||| |||||||||||||||||||
Sbjct: 113649 ctcggctcgggggcggcggcgcgg 113626
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,492,222
Number of Sequences: 3902068
Number of extensions: 6492222
Number of successful extensions: 137799
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136615
Number of HSP's gapped (non-prelim): 1184
length of query: 684
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 661
effective length of database: 17,143,297,704
effective search space: 11331719782344
effective search space used: 11331719782344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)