ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd13l01 |
|---|---|
| Clone Library Name | barley_pub |
>TRK1_SACBA (P28569) High-affinity potassium transport protein| Length = 1241 Score = 37.0 bits (84), Expect = 0.045 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = -3 Query: 405 EDLQPQI*FPHQKRRMGGHI*AHLHPTRPTKDRLPRDFARSAI*ENNTSE 256 +DL P+ FPHQK+ G+I HL R + ++ R + +I +N++S+ Sbjct: 460 DDLNPRSIFPHQKKSSKGYIMKHLPKARRIRQQIKRRLSTGSIDKNSSSD 509
>NUPL_HUMAN (P52594) Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)| (Rev-interacting protein) (Rev/Rex activation domain-binding protein) Length = 562 Score = 34.7 bits (78), Expect = 0.22 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Frame = +1 Query: 262 GVVLSNGTSGKVSGQSVLGWSSWVKMCSNVPAHSSLLVRKSDLRLKIF---LMVAGMEEC 432 G V+S + S + + S+ S+ S+ +F +VA + Sbjct: 358 GSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQ 417 Query: 433 SYSDVAVGPFGGRPTTIPFLIHGDTIIVGTLTPSRSNLK-----KNGTGPL-RPSGLGTP 594 S PFG P+T PF+ + + P ++N + GT + P+G GTP Sbjct: 418 PASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAATFGTASMSMPTGFGTP 477 Query: 595 AP 600 AP Sbjct: 478 AP 479
>PHLB_MYCTU (P95246) Phospholipase C 2 precursor (EC 3.1.4.3)| Length = 521 Score = 33.9 bits (76), Expect = 0.38 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 29/142 (20%) Frame = -1 Query: 590 VPSPDGLRGPVPFFFKFDRLGVRVPTMMVSPWIKKGMVVGRPPNGPTATSEYEHSSIPAT 411 VP G+RGP+ LG RVP +++SP+ + ++V ++H+S Sbjct: 384 VPGSGGIRGPIG-------LGFRVPCLVISPYSRGPLMV---------HDTFDHTSTLKL 427 Query: 410 IKKIFNLRSDFLTK-RDEWAGTFEHIFT----------QLDQPRTDCPETLPE------- 285 I+ F + LT RD G F LD PR + LP+ Sbjct: 428 IRARFGVPVPNLTAWRDATVGDMTSTFNFAAPPNPSKPNLDHPRLNALPKLPQCVPNAVL 487 Query: 284 -----------VPFERTTPAKE 252 VPF ++ P +E Sbjct: 488 GTVTKTAIPYRVPFPQSMPTQE 509
>PHLC_MYCTU (P95245) Phospholipase C 3 precursor (EC 3.1.4.3)| Length = 517 Score = 33.5 bits (75), Expect = 0.50 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 22/137 (16%) Frame = -1 Query: 590 VPSPDGLRGPVPFFFKFDRLGVRVPTMMVSPWIKKGMVV-------------GRPPNGPT 450 V G+RGP+ LG RVP ++SP+ + G++V G+ P Sbjct: 382 VDGSGGIRGPIG-------LGFRVPCFVISPYSRGGLMVHDRFDHTSQLQLIGKRFGVPV 434 Query: 449 ATSEYEHSSIPATIKKIFNLRSDFLTKRDEWAGTFEHIFTQLDQPRTDCP--------ET 294 +S+ + FN F D +H QL + P E Sbjct: 435 PNLTPWRASVTGDMTSAFN----FAAPPDPSPPNLDHPVRQLPKVAKCVPNVVLGFLNEG 490 Query: 293 LP-EVPFERTTPAKEHG 246 LP VP+ +TTP +E G Sbjct: 491 LPYRVPYPQTTPVQESG 507
>NUPL_BOVIN (Q2TA45) Nucleoporin-like protein RIP (HIV-1 Rev-binding protein| homolog) Length = 562 Score = 33.5 bits (75), Expect = 0.50 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 9/122 (7%) Frame = +1 Query: 262 GVVLSNGTSGKVSGQSVLGWSSWVKMCSNVPAHSSLLVRKSDLRLKIFLMV---AGMEEC 432 G V+S + S + + S+ S+ S+ +F V A + Sbjct: 358 GSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQ 417 Query: 433 SYSDVAVGPFGGRPTTIPFLIHGDTIIVGTLTPSRSNLK-----KNGTGPL-RPSGLGTP 594 S PFG P+T PF+ + + P ++N + GT + P+G GTP Sbjct: 418 PASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAATFGTASMSMPAGFGTP 477 Query: 595 AP 600 AP Sbjct: 478 AP 479
>PHLN_BURPS (Q9RGS8) Non-hemolytic phospholipase C precursor (EC 3.1.4.3)| (PLC-N) (Phosphatidylcholine cholinephosphohydrolase) (Phosphatidylcholine-hydrolyzing phospholipase C) (PC-PLC) Length = 700 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -1 Query: 533 LGVRVPTMMVSPWIKKGMVVGRPPNGPTATSEYEHSSIPATIKKIFNLR 387 LG RVP ++VSPW K G V + ++H+S+ I+ FN R Sbjct: 395 LGPRVPMLVVSPWTKGGWV---------CSQTFDHTSLLQFIEARFNDR 434
>UBE3A_MOUSE (O08759) Ubiquitin-protein ligase E3A (EC 6.3.2.-) (Oncogenic| protein-associated protein E6-AP) Length = 885 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 312 PWLVELGEDVLKCARPFVSFGEEIRSEVEDLLDGRRD 422 P ELG L C +P +SF E I + D+L+ +D Sbjct: 438 PLETELGVKTLDCRKPLISFEESINEPLNDVLEMDKD 474
>PDP_BACSU (P39142) Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) (PYNP)| Length = 433 Score = 31.2 bits (69), Expect = 2.5 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -1 Query: 323 DQPRTDCPETLPEVPFERTTPAKEHGILSDFQRELVELASFLNG 192 D D P LP+ ++ PAKE G++S+ + + +A+ L G Sbjct: 319 DSSIVDDPSKLPQAAYQIDVPAKEAGVVSEIVADEIGVAAMLLG 362
>RPO3B_TOBAC (Q8L6J1) DNA-directed RNA polymerase 3B, chloroplast precursor (EC| 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3B) (NictaRpoT3-tom) Length = 977 Score = 30.8 bits (68), Expect = 3.2 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +1 Query: 214 STSSRWKSERIPCSFAGVVLSNGTSGKVSGQSVLGWSSWVK 336 S +S+W+++++P F V+ N GK+S S L SS+ K Sbjct: 10 SPTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSSFPK 50
>PHLA_MYCTU (Q04001) Phospholipase C 1 precursor (EC 3.1.4.3) (MTP40 antigen)| Length = 520 Score = 30.8 bits (68), Expect = 3.2 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Frame = -1 Query: 590 VPSPDGLRGPVPFFFKFDRLGVRVPTMMVSPWIKKGMVVGRPPNGPTATSE-YEHSSIPA 414 VP G+RGP+ LG RVP +++SP+ + GP S+ ++H+S Sbjct: 380 VPGSGGIRGPLG-------LGFRVPCIVISPYSR----------GPLMVSDTFDHTSQLK 422 Query: 413 TIKKIFNLRSDFLTK-RDEWAGTFEHIFTQLDQPRTDCPE-------TLPEVP 279 I+ F + +T RD G F P + P LP++P Sbjct: 423 LIRARFGVPVPNMTAWRDGVVGDMTSAFNFATPPNSTRPNLSHPLLGALPKLP 475
>KITH_HAEDU (Q7VLH2) Thymidine kinase (EC 2.7.1.21)| Length = 198 Score = 30.4 bits (67), Expect = 4.2 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Frame = -1 Query: 293 LPEVPFERTTPAKEHGILSDFQRELVELASFLNGDYMLTSFAQETQKKMTV----KQADT 126 L +V E P +G+ +DFQ+EL E G L ++A E Q+ T+ K+A Sbjct: 100 LTDVVDELKIPVLCYGLRTDFQKELFE------GSQYLLAWADELQELKTICECGKKAHF 153 Query: 125 YVRRAIKGFLHASRQARRLGANESAIVTMR 36 +R G + + ++G N+ I R Sbjct: 154 VIRLNENGETVTTGEQIQIGGNDKYISVCR 183
>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 730 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Frame = +3 Query: 255 FRWCCSLKWHFWQSLWAICPWLVE--------LGEDVLKCARPFVSFGEEIRSEVEDLLD 410 +RWC + + L+ CP V+ GE C PFV G++ S D Sbjct: 311 YRWCATTANYDQDKLYGFCPTRVDATVVGGNSAGE---LCVFPFVFLGKQYSSCTS---D 364 Query: 411 GRRDG 425 GRRDG Sbjct: 365 GRRDG 369
>RPOT3_NICSY (P69242) DNA-directed RNA polymerase 3, chloroplast precursor (EC| 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3) (NsRpoT-C) Length = 977 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +1 Query: 214 STSSRWKSERIPCSFAGVVLSNGTSGKVSGQSVLGWSSWVK 336 S +S+W+++++P F V+ N GK+S S L SS+ K Sbjct: 10 SPTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSSFPK 50
>RPO3A_TOBAC (P69243) DNA-directed RNA polymerase 3A, chloroplast precursor (EC| 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3A) (NictaRpoT3-syl) Length = 977 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +1 Query: 214 STSSRWKSERIPCSFAGVVLSNGTSGKVSGQSVLGWSSWVK 336 S +S+W+++++P F V+ N GK+S S L SS+ K Sbjct: 10 SPTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSSFPK 50
>GSH1_PHOLL (Q7N7A4) Glutamate--cysteine ligase (EC 6.3.2.2)| (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 519 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 297 LWAICPWLVELGEDVLKCARPFVSFGEEIRSEVEDLLDGRRDGGVLVLGCG 449 +W + E+G D L C R ++ +L+GR+ G ++ LGCG Sbjct: 355 IWCVLAEAPEMGSDELDCCR---------KNWNRVILEGRKPGQMIGLGCG 396
>UCRIC_ANASP (P70758) Cytochrome b6-f complex iron-sulfur subunit 3 (EC| 1.10.99.1) (Rieske iron-sulfur protein 3) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 3) (ISP 3) (RISP 3) Length = 178 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 584 SPDG--LRGPVPFFFKFDRLGVRVPTMMVSPWIKKGMVVGRPP 462 +PDG +RGP P K ++ V ++++SPW + G+ P Sbjct: 133 APDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKP 175
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 29.3 bits (64), Expect = 9.4 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 4/116 (3%) Frame = -1 Query: 590 VPSPDGLRGPVPFFFKFDRLGVRVPTMMVSPWIKKGMVVGRPPNGPTATSEYEH--SSIP 417 V P G GP+P +R G + +P + + P +GP + + P Sbjct: 359 VRDPPGRSGPLPPPPPINRNGSTARALPATPQLPSRSGMDSPRSGPRPPLPPDRPGAGAP 418 Query: 416 ATIKKIFNLRSDFLTK--RDEWAGTFEHIFTQLDQPRTDCPETLPEVPFERTTPAK 255 ++R+ F DEW F P +D P P VP +T P+K Sbjct: 419 PPPPPSTSVRNGFQDSSCEDEWESRFYF------HPISDLPPPEPYVPTTKTYPSK 468
>SCNNA_BOVIN (P55270) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 650 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +1 Query: 49 IADSFAPNRLACLLACRKPLMARLTYVSACFT 144 + D+F+ +RL C CRKP + +SA ++ Sbjct: 441 LQDAFSSDRLGCFTKCRKPCSVTIYKLSASYS 472
>GLMM_DESPS (Q6AMQ5) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 450 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +1 Query: 253 SFAGVVLSNGTSGKVSGQSVLGWSSWVKMCS-NVPAHSSLLVRKSDLRLKIFLMVAGMEE 429 SF V+ + T+ K+S S++G++ VK + +LVR S I +MV G++ Sbjct: 371 SFPQVLKNVRTAKKISVDSIVGFADAVKKYEMQLGDTGRILVRPSGTEPVIRVMVEGLDS 430 Query: 430 CSYSDVA 450 +D+A Sbjct: 431 AEINDIA 437
>CP46A_HUMAN (Q9Y6A2) Cytochrome p450 46A1 (EC 1.14.13.98) (Cholesterol| 24-hydroxylase) (CH24H) Length = 500 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 593 GVPSPDGLRGPVPFFFKFDRLGVRVPTMMVSPWIKK 486 G P P L G +P F+K D +G RV + W KK Sbjct: 35 GPPRPSFLLGHLPCFWKKDEVGGRVLQDVFLDWAKK 70
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 29.3 bits (64), Expect = 9.4 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 4/116 (3%) Frame = -1 Query: 590 VPSPDGLRGPVPFFFKFDRLGVRVPTMMVSPWIKKGMVVGRPPNGPTATSEYEH--SSIP 417 V P G GP+P +R G + +P + + P +GP + + P Sbjct: 353 VRDPPGRSGPLPPPPPINRNGSTARALPATPQLPSRSGMDSPRSGPRPPLPPDRPGAGAP 412 Query: 416 ATIKKIFNLRSDFLTK--RDEWAGTFEHIFTQLDQPRTDCPETLPEVPFERTTPAK 255 ++R+ F DEW F P +D P P VP +T P+K Sbjct: 413 PPPPPSTSVRNGFQDSSCEDEWESRFYF------HPISDLPPPEPYVPTTKTYPSK 462
>ARGD_BACAN (Q81M98) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 386 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +1 Query: 496 HGDTIIVGTLTPSRSNLKKNGTGPLRPSGLGTP 594 HG T GT++ + N K G GPL PS L TP Sbjct: 124 HGRTF--GTMSATGQNKVKEGFGPLLPSFLHTP 154
>MYH6_HUMAN (P13533) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) Length = 1939 Score = 29.3 bits (64), Expect = 9.4 Identities = 26/86 (30%), Positives = 37/86 (43%) Frame = -1 Query: 407 KKIFNLRSDFLTKRDEWAGTFEHIFTQLDQPRTDCPETLPEVPFERTTPAKEHGILSDFQ 228 KK F++ DE A + + +L + + E E+ ERT AK + SD Sbjct: 1084 KKEFDINQQNSKIEDEQALALQ-LQKKLKENQARIEELEEELEAERTARAKVEKLRSDLS 1142 Query: 227 RELVELASFLNGDYMLTSFAQETQKK 150 REL E++ L TS E KK Sbjct: 1143 RELEEISERLEEAGGATSVQIEMNKK 1168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,343,126 Number of Sequences: 219361 Number of extensions: 1553976 Number of successful extensions: 5325 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5314 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
