ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13k23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
2dbj|AK067224.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
3gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 62 8e-07
4gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome... 62 8e-07
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
6gb|AY112495.1| Zea mays CL38436_1 mRNA sequence 52 7e-04
7dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 48 0.012
8gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromo... 48 0.012
9emb|AL158014.20| Human DNA sequence from clone RP11-88I10 on chr... 44 0.18
10gb|AC005874.3|AC005874 citb_175_g_20, complete sequence 44 0.18
11gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Co... 44 0.18
12ref|XM_691081.1| PREDICTED: Danio rerio similar to potassium cha... 42 0.72
13emb|AL845369.7| Zebrafish DNA sequence from clone CH211-12E13 in... 42 0.72
14gb|AC147826.2| Xenopus tropicalis clone CH216-138M21, complete s... 40 2.8
15gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, comp... 40 2.8
16gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 2.8
17gb|AC113207.8| Mus musculus chromosome 10, clone RP23-323O18, co... 40 2.8
18emb|AL732507.6| Mouse DNA sequence from clone RP23-67E13 on chro... 40 2.8 
>dbj|AK101078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024C12, full
            insert sequence
          Length = 2350

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 102/123 (82%), Gaps = 2/123 (1%)
 Strand = Plus / Minus

                                                                        
Query: 101  attgccatggggttcttcttccgccccgctgcaagcgtcgaactagttttggcactagat 160
            ||||||||||| |||||||| || ||||| |||  ||| || |||| |||||  | ||||
Sbjct: 2053 attgccatggg-ttcttctttcggcccgccgcattcgttgagctagctttggagccagat 1995

                                                                        
Query: 161  ttcaacttcttcaacttgccccgaangcnggntcttttgaggttncagtttataaatccg 220
            |||||||||||||||||||||||||  |    |||||||||||| ||||||||| || ||
Sbjct: 1994 ttcaacttcttcaacttgccccgaac-cctattcttttgaggtttcagtttatatatacg 1936

               
Query: 221  gac 223
            |||
Sbjct: 1935 gac 1933



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 22   ttctagttcttttggagcttgggtgcagttgagcta 57
            ||||||||||||| |||||| | |||||||||||||
Sbjct: 2139 ttctagttctttt-gagcttagttgcagttgagcta 2105
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>dbj|AK067224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L06, full
            insert sequence
          Length = 2758

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 102/123 (82%), Gaps = 2/123 (1%)
 Strand = Plus / Minus

                                                                        
Query: 101  attgccatggggttcttcttccgccccgctgcaagcgtcgaactagttttggcactagat 160
            ||||||||||| |||||||| || ||||| |||  ||| || |||| |||||  | ||||
Sbjct: 2430 attgccatggg-ttcttctttcggcccgccgcattcgttgagctagctttggagccagat 2372

                                                                        
Query: 161  ttcaacttcttcaacttgccccgaangcnggntcttttgaggttncagtttataaatccg 220
            |||||||||||||||||||||||||  |    |||||||||||| ||||||||| || ||
Sbjct: 2371 ttcaacttcttcaacttgccccgaac-cctattcttttgaggtttcagtttatatatacg 2313

               
Query: 221  gac 223
            |||
Sbjct: 2312 gac 2310



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 22   ttctagttcttttggagcttgggtgcagttgagcta 57
            ||||||||||||| |||||| | |||||||||||||
Sbjct: 2516 ttctagttctttt-gagcttagttgcagttgagcta 2482
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>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
              complete sequence
          Length = 169073

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 58/67 (86%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                          
Query: 157    agatttcaacttcttcaacttgccccgaangcnggntcttttgaggttncagtttataaa 216
              |||||||||||||||||||||||||||||  |    |||||||||||| ||||||||| |
Sbjct: 127795 agatttcaacttcttcaacttgccccgaac-cctattcttttgaggtttcagtttatata 127853

                     
Query: 217    tccggac 223
              | |||||
Sbjct: 127854 tacggac 127860



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                  
Query: 22     ttctagttcttttggagcttgggtgcagttgagcta 57
              |||||||||||||| ||||| | |||||||||||||
Sbjct: 127562 ttctagttcttttg-agcttagttgcagttgagcta 127596
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>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07,
             complete sequence
          Length = 147122

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 58/67 (86%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                         
Query: 157   agatttcaacttcttcaacttgccccgaangcnggntcttttgaggttncagtttataaa 216
             |||||||||||||||||||||||||||||  |    |||||||||||| ||||||||| |
Sbjct: 23757 agatttcaacttcttcaacttgccccgaac-cctattcttttgaggtttcagtttatata 23815

                    
Query: 217   tccggac 223
             | |||||
Sbjct: 23816 tacggac 23822



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                 
Query: 22    ttctagttcttttggagcttgggtgcagttgagcta 57
             |||||||||||||| ||||| | |||||||||||||
Sbjct: 23524 ttctagttcttttg-agcttagttgcagttgagcta 23558
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 58/67 (86%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                            
Query: 157      agatttcaacttcttcaacttgccccgaangcnggntcttttgaggttncagtttataaa 216
                |||||||||||||||||||||||||||||  |    |||||||||||| ||||||||| |
Sbjct: 25611388 agatttcaacttcttcaacttgccccgaac-cctattcttttgaggtttcagtttatata 25611446

                       
Query: 217      tccggac 223
                | |||||
Sbjct: 25611447 tacggac 25611453



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 22       ttctagttcttttggagcttgggtgcagttgagcta 57
                |||||||||||||| ||||| | |||||||||||||
Sbjct: 25611155 ttctagttcttttg-agcttagttgcagttgagcta 25611189
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>gb|AY112495.1| Zea mays CL38436_1 mRNA sequence
          Length = 888

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                       
Query: 116 ttcttccgccccgctgcaagcgtcgaactagttttggcactagatttcaacttcttcaac 175
           ||||| ||||| || ||||| || | ||||||||||||||| |  ||||||||||||| |
Sbjct: 507 ttctttcgccctgccgcaagtgtgggactagttttggcactggccttcaacttcttcagc 566

                     
Query: 176 ttgccccgaa 185
           ||||| ||||
Sbjct: 567 ttgcctcgaa 576
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>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete
              sequence
          Length = 227942

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 60     atatcaagtctctcatgtaaaatg 83
              ||||||||||||||||||||||||
Sbjct: 191409 atatcaagtctctcatgtaaaatg 191386
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>gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromosome unknown, complete
              sequence
          Length = 163279

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 60     atatcaagtctctcatgtaaaatg 83
              ||||||||||||||||||||||||
Sbjct: 152426 atatcaagtctctcatgtaaaatg 152449
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>emb|AL158014.20| Human DNA sequence from clone RP11-88I10 on chromosome 10q25.2-26.2
             Contains the 5' end of a novel gene, the 5' end of the
             SAC2 gene for Sac domain-containing inositol phosphatase 2
             and three CpG islands, complete sequence
          Length = 114244

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 63    tcaagtctctcatgtaaaatgg 84
             ||||||||||||||||||||||
Sbjct: 96930 tcaagtctctcatgtaaaatgg 96909
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>gb|AC005874.3|AC005874 citb_175_g_20, complete sequence
          Length = 177750

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 63     tcaagtctctcatgtaaaatgg 84
              ||||||||||||||||||||||
Sbjct: 168072 tcaagtctctcatgtaaaatgg 168051
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>gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Contig902E_1999.01.14,
              complete sequence
          Length = 177747

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 63     tcaagtctctcatgtaaaatgg 84
              ||||||||||||||||||||||
Sbjct: 168069 tcaagtctctcatgtaaaatgg 168048
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>ref|XM_691081.1| PREDICTED: Danio rerio similar to potassium channel, subfamily V,
            member 2 (LOC567780), mRNA
          Length = 1627

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 90   tgtttctcttcattgccatggggttcttc 118
            |||||||||||||||| |||||| |||||
Sbjct: 1224 tgtttctcttcattgcgatggggatcttc 1252
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>emb|AL845369.7| Zebrafish DNA sequence from clone CH211-12E13 in linkage group 5,
             complete sequence
          Length = 190981

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 90    tgtttctcttcattgccatggggttcttc 118
             |||||||||||||||| |||||| |||||
Sbjct: 37664 tgtttctcttcattgcgatggggatcttc 37636
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>gb|AC147826.2| Xenopus tropicalis clone CH216-138M21, complete sequence
          Length = 145416

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    ttggagcttgggtgcagttg 52
             ||||||||||||||||||||
Sbjct: 40156 ttggagcttgggtgcagttg 40175
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>gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, complete sequence
          Length = 237801

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 193   tcttttgaggttncagtttataa 215
             |||||||||||| ||||||||||
Sbjct: 99587 tcttttgaggttacagtttataa 99565
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     ctcatgtaaaatggaacatt 90
              ||||||||||||||||||||
Sbjct: 560476 ctcatgtaaaatggaacatt 560495
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>gb|AC113207.8| Mus musculus chromosome 10, clone RP23-323O18, complete sequence
          Length = 237187

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 193   tcttttgaggttncagtttataa 215
             |||||||||||| ||||||||||
Sbjct: 11099 tcttttgaggttacagtttataa 11077
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>emb|AL732507.6| Mouse DNA sequence from clone RP23-67E13 on chromosome 2, complete
              sequence
          Length = 197132

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     atggaacattgtttctcttc 100
              ||||||||||||||||||||
Sbjct: 108273 atggaacattgtttctcttc 108292


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,858,442
Number of Sequences: 3902068
Number of extensions: 1858442
Number of successful extensions: 129933
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129811
Number of HSP's gapped (non-prelim): 117
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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