Clone Information

BLAST Search Result

Clone Name	rbasd13k20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	84	6e-13
2	gb\|AC073405.2\| Oryza sativa (japonica cultivar-group) chromosome...	84	6e-13
3	gb\|AC152969.1\| Oryza sativa (japonica cultivar-group) chromosome...	84	6e-13
4	emb\|Y09874.2\|SBANS5PRT Sorghum bicolor mRNA for pSbaNS5 protein	72	2e-09
5	ref\|XM_549869.1\| Oryza sativa (japonica cultivar-group), mRNA	68	4e-08
6	dbj\|AK121497.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	68	4e-08
7	gb\|AY110474.1\| Zea mays CL17761_1 mRNA sequence	68	4e-08
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.035
9	dbj\|AP002845.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.035
10	gb\|L47745.1\|PIAEMB25R Picea glauca albumin-like protein (EMB25) ...	46	0.14
11	gb\|AC087560.26\| Mus musculus strain C57BL/6J clone rp23-448g13 m...	44	0.54
12	emb\|AL954389.5\| Mouse DNA sequence from clone RP23-321F18 on chr...	44	0.54
13	ref\|XM_483219.1\| Oryza sativa (japonica cultivar-group), mRNA	42	2.1
14	gb\|AC147638.2\| Mus musculus BAC clone RP23-181L5 from chromosome...	42	2.1
15	gb\|AC151830.3\| Mus musculus BAC clone RP24-76I23 from chromosome...	42	2.1
16	ref\|NM_169611.1\| Drosophila melanogaster CG6904-RC, transcript v...	42	2.1
17	ref\|NM_169610.1\| Drosophila melanogaster CG6904-RA, transcript v...	42	2.1
18	ref\|NM_142165.2\| Drosophila melanogaster CG6904-RB, transcript v...	42	2.1
19	gb\|AC009904.7\| Drosophila melanogaster, chromosome 3R, region 88...	42	2.1
20	gb\|AY052005.1\| Drosophila melanogaster LD46952 full length cDNA	42	2.1
21	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	42	2.1
22	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
23	gb\|AC009457.8\|AC009457 Drosophila melanogaster, chromosome 3R, r...	42	2.1
24	dbj\|AP004190.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
25	gb\|AE003707.2\| Drosophila melanogaster chromosome 3R, section 45...	42	2.1
26	gb\|AF074938.1\|AF074938 Picea glauca 2S albumin-like protein mRNA...	42	2.1
27	ref\|NM_121506.2\| Arabidopsis thaliana unknown protein AT5G15020 ...	40	8.4
28	ref\|NM_179549.2\| Arabidopsis thaliana acid phosphatase AT1G72880...	40	8.4
29	ref\|NM_105946.3\| Arabidopsis thaliana acid phosphatase AT1G72880...	40	8.4
30	gb\|AC147024.2\| Pan troglodytes BAC clone RP43-89L5 from 7, compl...	40	8.4
31	gb\|AC123074.2\| Mus musculus BAC clone RP23-168H19 from 10, compl...	40	8.4
32	gb\|BC046095.1\| Homo sapiens A kinase (PRKA) anchor protein (grav...	40	8.4
33	emb\|AL033392.5\|HS403M6 Human DNA sequence from clone RP3-403M6 o...	40	8.4
34	emb\|AL603841.4\| Human DNA sequence from clone RP11-408E1 on chro...	40	8.4
35	emb\|CR626927.1\| Bacteroides fragilis NCTC 9343, complete genome	40	8.4
36	emb\|AL391146.1\|ATF2G14 Arabidopsis thaliana DNA chromosome 5, BA...	40	8.4
37	gb\|AC153988.5\| Mus musculus 6 BAC RP24-553I1 (Roswell Park Cance...	40	8.4
38	emb\|BX511209.11\| Zebrafish DNA sequence from clone CH211-129A6 i...	40	8.4
39	gb\|AC159546.4\| Mus musculus 6 BAC RP23-450B23 (Roswell Park Canc...	40	8.4
40	dbj\|AK126161.1\| Homo sapiens cDNA FLJ44173 fis, clone THYMU2036105	40	8.4
41	gb\|AC026789.5\| Homo sapiens chromosome 5 clone CTD-2219P2, compl...	40	8.4
42	gb\|AC026727.6\| Homo sapiens chromosome 5 clone CTD-2258D6, compl...	40	8.4
43	gb\|AF420083.1\| Nerodia erythrogaster NADH dehydrogenase subunit ...	40	8.4
44	gb\|AF384833.1\| Nerodia taxispilota NADH dehydrogenase subunit II...	40	8.4
45	gb\|AF384831.1\| Nerodia erythrogaster NADH dehydrogenase subunit ...	40	8.4
46	gb\|BT006375.1\| Arabidopsis thaliana At1g72880 gene, complete cds	40	8.4
47	gb\|AF350318.1\| Amaranthus tricolor copia-like retrotransposon C1...	40	8.4
48	gb\|AC008549.6\|AC008549 Homo sapiens chromosome 5 clone CTC-505O3...	40	8.4
49	emb\|BX816834.1\|CNS0AD65 Arabidopsis thaliana Full-length cDNA Co...	40	8.4
50	emb\|BX830006.1\|CNS0A1IY Arabidopsis thaliana Full-length cDNA Co...	40	8.4
51	emb\|BX832976.1\|CNS0A0BE Arabidopsis thaliana Full-length cDNA Co...	40	8.4
52	emb\|AJ292057.1\|ECO292057 Populus deltoides 5S rRNA gene, clone P...	40	8.4
53	dbj\|AP006841.1\| Bacteroides fragilis YCH46 DNA, complete genome	40	8.4
54	emb\|BX000437.7\| Zebrafish DNA sequence from clone DKEY-106O5 in ...	40	8.4
55	gb\|AC008017.2\|AC008017 Arabidopsis thaliana chromosome I BAC F3N...	40	8.4
56	gb\|AC004701.1\|AC004701 Homo sapiens chromosome 4 clone B331M8 ma...	40	8.4
57	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	40	8.4
58	emb\|AL683811.6\| Mouse DNA sequence from clone RP23-291K22 on chr...	40	8.4
59	emb\|AL845173.4\| Mouse DNA sequence from clone RP23-322G1 on chro...	40	8.4

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
            complete sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                        
Query: 512  acctttgaggatttgcaggttatcttgcattcaaggccattcgcaaccttgaaatcatcc 571
            ||||||||||||||||||| ||||||||||||||| ||||| | |||| ||||| |||| 
Sbjct: 8382 acctttgaggatttgcaggatatcttgcattcaagaccattagtaaccatgaaagcatca 8441

                                  
Query: 572  atgacctccaaggaagcttgag 593
            ||| ||| ||| ||||||||||
Sbjct: 8442 atggccttcaaagaagcttgag 8463



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 479  aataaaaagtcttctgtatcaaggacatacgaaacct 515
            ||||| || ||||| |||||||||||||| |||||||
Sbjct: 8212 aataagaaatcttcagtatcaaggacataggaaacct 8248

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>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10,
            complete sequence
          Length = 156772

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                        
Query: 512  acctttgaggatttgcaggttatcttgcattcaaggccattcgcaaccttgaaatcatcc 571
            ||||||||||||||||||| ||||||||||||||| ||||| | |||| ||||| |||| 
Sbjct: 8382 acctttgaggatttgcaggatatcttgcattcaagaccattagtaaccatgaaagcatca 8441

                                  
Query: 572  atgacctccaaggaagcttgag 593
            ||| ||| ||| ||||||||||
Sbjct: 8442 atggccttcaaagaagcttgag 8463



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 479  aataaaaagtcttctgtatcaaggacatacgaaacct 515
            ||||| || ||||| |||||||||||||| |||||||
Sbjct: 8212 aataagaaatcttcagtatcaaggacataggaaacct 8248

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>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0098I11, complete sequence
          Length = 122970

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                         
Query: 512   acctttgaggatttgcaggttatcttgcattcaaggccattcgcaaccttgaaatcatcc 571
             ||||||||||||||||||| ||||||||||||||| ||||| | |||| ||||| |||| 
Sbjct: 17611 acctttgaggatttgcaggatatcttgcattcaagaccattagtaaccatgaaagcatca 17670

                                   
Query: 572   atgacctccaaggaagcttgag 593
             ||| ||| ||| ||||||||||
Sbjct: 17671 atggccttcaaagaagcttgag 17692



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 479   aataaaaagtcttctgtatcaaggacatacgaaacct 515
             ||||| || ||||| |||||||||||||| |||||||
Sbjct: 17441 aataagaaatcttcagtatcaaggacataggaaacct 17477

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>emb|Y09874.2|SBANS5PRT Sorghum bicolor mRNA for pSbaNS5 protein
          Length = 851

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 488 tcttctgtatcaaggacatacgaaacctttgaggatttgcaggttatcttgcattcaagg 547
           ||||| |||||||||||||| || ||||| ||||  ||||||| ||||||||||||||| 
Sbjct: 264 tcttcagtatcaaggacatatgagaccttagaggtcttgcaggatatcttgcattcaaga 205

                           
Query: 548 ccattcgcaaccttga 563
           |||||| |||| ||||
Sbjct: 204 ccattcacaactttga 189

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>ref|XM_549869.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4570

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 97/118 (82%)
 Strand = Plus / Minus

                                                                        
Query: 457  tctcctcctgttcctcatacggaataaaaagtcttctgtatcaaggacatacgaaacctt 516
            ||||||||| || ||||  || ||||| || ||||| || ||||||||||| || |||||
Sbjct: 3885 tctcctcctctttctcaatcgaaataagaaatcttcagtgtcaaggacatatgagacctt 3826

                                                                      
Query: 517  tgaggatttgcaggttatcttgcattcaaggccattcgcaaccttgaaatcatccatg 574
             ||||  ||||| | ||||||||||||||||||||| || || |||| | ||||||||
Sbjct: 3825 agaggtcttgcatgatatcttgcattcaaggccattagcgactttgacaccatccatg 3768

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>dbj|AK121497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033007H10, full
            insert sequence
          Length = 4570

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 97/118 (82%)
 Strand = Plus / Minus

                                                                        
Query: 457  tctcctcctgttcctcatacggaataaaaagtcttctgtatcaaggacatacgaaacctt 516
            ||||||||| || ||||  || ||||| || ||||| || ||||||||||| || |||||
Sbjct: 3885 tctcctcctctttctcaatcgaaataagaaatcttcagtgtcaaggacatatgagacctt 3826

                                                                      
Query: 517  tgaggatttgcaggttatcttgcattcaaggccattcgcaaccttgaaatcatccatg 574
             ||||  ||||| | ||||||||||||||||||||| || || |||| | ||||||||
Sbjct: 3825 agaggtcttgcatgatatcttgcattcaaggccattagcgactttgacaccatccatg 3768

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>gb|AY110474.1| Zea mays CL17761_1 mRNA sequence
          Length = 1226

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 488 tcttctgtatcaaggacatacgaaacctttgaggatttgcaggttatcttgcattcaagg 547
           ||||| |||||||||||||| || || || ||||  ||||||| ||||||||||||||| 
Sbjct: 716 tcttcagtatcaaggacatatgagactttcgaggtcttgcaggatatcttgcattcaaga 657

                                     
Query: 548 ccattcgcaaccttgaaatcatccat 573
           |||||| |||| |||| | |||||||
Sbjct: 656 ccattcacaacattgataccatccat 631

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                          
Query: 511    aacctttgaggatttgcaggttatcttgcattcaaggccattcgcaaccttgaaatcatc 570
              |||||| ||||  ||||| | ||||||||||||||||||||| || || |||| | ||||
Sbjct: 513806 aaccttagaggtcttgcatgatatcttgcattcaaggccattagcgactttgacaccatc 513865

                  
Query: 571    catg 574
              ||||
Sbjct: 513866 catg 513869

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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0482C06
          Length = 182779

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                          
Query: 511    aacctttgaggatttgcaggttatcttgcattcaaggccattcgcaaccttgaaatcatc 570
              |||||| ||||  ||||| | ||||||||||||||||||||| || || |||| | ||||
Sbjct: 154007 aaccttagaggtcttgcatgatatcttgcattcaaggccattagcgactttgacaccatc 154066

                  
Query: 571    catg 574
              ||||
Sbjct: 154067 catg 154070

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>gb|L47745.1|PIAEMB25R Picea glauca albumin-like protein (EMB25) mRNA, complete cds
          Length = 714

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 188 ctctccgcaccacatcatcttcttccattcc 218
           ||||||||||||| || ||||||||||||||
Sbjct: 411 ctctccgcaccacctcctcttcttccattcc 381

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>gb|AC087560.26| Mus musculus strain C57BL/6J clone rp23-448g13 map X, complete sequence
          Length = 203953

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   cacatgctttgctttggttggt 167
             ||||||||||||||||||||||
Sbjct: 33930 cacatgctttgctttggttggt 33951

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>emb|AL954389.5| Mouse DNA sequence from clone RP23-321F18 on chromosome X, complete
            sequence
          Length = 25193

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 146  cacatgctttgctttggttggt 167
            ||||||||||||||||||||||
Sbjct: 8403 cacatgctttgctttggttggt 8424

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>ref|XM_483219.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 206 cttcttccattccaaaaaggc 226
           |||||||||||||||||||||
Sbjct: 556 cttcttccattccaaaaaggc 536

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>gb|AC147638.2| Mus musculus BAC clone RP23-181L5 from chromosome 7, complete sequence
          Length = 196114

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 61     atacataacattaataatata 81
              |||||||||||||||||||||
Sbjct: 135698 atacataacattaataatata 135678

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>gb|AC151830.3| Mus musculus BAC clone RP24-76I23 from chromosome 7, complete sequence
          Length = 212931

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    atacataacattaataatata 81
             |||||||||||||||||||||
Sbjct: 89076 atacataacattaataatata 89056

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>ref|NM_169611.1| Drosophila melanogaster CG6904-RC, transcript variant C (CG6904),
            mRNA
          Length = 2566

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 54   tctgggcatacataacattaataat 78
            ||||||||||||||| |||||||||
Sbjct: 2429 tctgggcatacataatattaataat 2405

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>ref|NM_169610.1| Drosophila melanogaster CG6904-RA, transcript variant A (CG6904),
            mRNA
          Length = 2688

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 54   tctgggcatacataacattaataat 78
            ||||||||||||||| |||||||||
Sbjct: 2551 tctgggcatacataatattaataat 2527

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>ref|NM_142165.2| Drosophila melanogaster CG6904-RB, transcript variant B (CG6904),
            mRNA
          Length = 3132

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 54   tctgggcatacataacattaataat 78
            ||||||||||||||| |||||||||
Sbjct: 2995 tctgggcatacataatattaataat 2971

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>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
             BACR32A03, complete sequence
          Length = 182601

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 54    tctgggcatacataacattaataat 78
             ||||||||||||||| |||||||||
Sbjct: 52000 tctgggcatacataatattaataat 52024

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>gb|AY052005.1| Drosophila melanogaster LD46952 full length cDNA
          Length = 3149

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 54   tctgggcatacataacattaataat 78
            ||||||||||||||| |||||||||
Sbjct: 2995 tctgggcatacataatattaataat 2971

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 227     taggctgtaccaaaaaggttg 247
               |||||||||||||||||||||
Sbjct: 2592476 taggctgtaccaaaaaggttg 2592456

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 206      cttcttccattccaaaaaggc 226
                |||||||||||||||||||||
Sbjct: 24871897 cttcttccattccaaaaaggc 24871917

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>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
              BACR25A06, complete sequence
          Length = 170163

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 54     tctgggcatacataacattaataat 78
              ||||||||||||||| |||||||||
Sbjct: 167849 tctgggcatacataatattaataat 167873

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>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1506_F01
          Length = 121202

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   cttcttccattccaaaaaggc 226
             |||||||||||||||||||||
Sbjct: 76343 cttcttccattccaaaaaggc 76363

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>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the complete
              sequence
          Length = 228284

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 54     tctgggcatacataacattaataat 78
              ||||||||||||||| |||||||||
Sbjct: 173690 tctgggcatacataatattaataat 173714

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>gb|AF074938.1|AF074938 Picea glauca 2S albumin-like protein mRNA, complete cds
          Length = 720

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 188 ctctccgcaccacatcatcttcttccatt 216
           ||||||||||||| || ||||||||||||
Sbjct: 425 ctctccgcaccacctcctcttcttccatt 397

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>ref|NM_121506.2| Arabidopsis thaliana unknown protein AT5G15020 mRNA, complete cds
          Length = 4404

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 533  atcttgcattcaaggccatt 552
            ||||||||||||||||||||
Sbjct: 3980 atcttgcattcaaggccatt 3961

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>ref|NM_179549.2| Arabidopsis thaliana acid phosphatase AT1G72880 transcript variant
           AT1G72880.2 mRNA, complete cds
          Length = 1564

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 138 actgcctacacatgctttgctttg 161
           ||||||| ||||||||||||||||
Sbjct: 883 actgcctccacatgctttgctttg 860

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>ref|NM_105946.3| Arabidopsis thaliana acid phosphatase AT1G72880 transcript variant
           AT1G72880.1 mRNA, complete cds
          Length = 1662

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 138 actgcctacacatgctttgctttg 161
           ||||||| ||||||||||||||||
Sbjct: 981 actgcctccacatgctttgctttg 958

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>gb|AC147024.2| Pan troglodytes BAC clone RP43-89L5 from 7, complete sequence
          Length = 162174

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   gaaatcatccatgacctcca 581
             ||||||||||||||||||||
Sbjct: 88643 gaaatcatccatgacctcca 88624

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>gb|AC123074.2| Mus musculus BAC clone RP23-168H19 from 10, complete sequence
          Length = 210189

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   aggaagcttgaggaccattg 601
             ||||||||||||||||||||
Sbjct: 97608 aggaagcttgaggaccattg 97627

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>gb|BC046095.1| Homo sapiens A kinase (PRKA) anchor protein (gravin) 12, mRNA (cDNA
            clone IMAGE:6190455), complete cds
          Length = 1940

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  aaaaaggttgggaagcagct 257
            ||||||||||||||||||||
Sbjct: 1311 aaaaaggttgggaagcagct 1330

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>emb|AL033392.5|HS403M6 Human DNA sequence from clone RP3-403M6 on chromosome 6q24.1-25.3
             Contains part of the AKAP12 gene for A kinase (PRKA)
             anchor protein (gravin) 12, complete sequence
          Length = 86329

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   aaaaaggttgggaagcagct 257
             ||||||||||||||||||||
Sbjct: 69211 aaaaaggttgggaagcagct 69230

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>emb|AL603841.4| Human DNA sequence from clone RP11-408E1 on chromosome 1 Contains a 35
             kDa subunit 1 alpha eukaryotic translation initiation
             factor 3 (EIF3S1) pseudogene, complete sequence
          Length = 41617

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   gattagatgataccatggca 331
             ||||||||||||||||||||
Sbjct: 27120 gattagatgataccatggca 27139

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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 47     attctcttctgggcatacataacattaa 74
              |||||||| |||||||||||||| ||||
Sbjct: 985541 attctcttttgggcatacataactttaa 985514

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>emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project)
          Length = 85992

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   atcttgcattcaaggccatt 552
             ||||||||||||||||||||
Sbjct: 44396 atcttgcattcaaggccatt 44415

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>gb|AC153988.5| Mus musculus 6 BAC RP24-553I1 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 136725

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 581    aaggaagcttgaggaccatt 600
              ||||||||||||||||||||
Sbjct: 116537 aaggaagcttgaggaccatt 116518

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>emb|BX511209.11| Zebrafish DNA sequence from clone CH211-129A6 in linkage group 5,
              complete sequence
          Length = 159017

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     catacataacattaataata 79
              ||||||||||||||||||||
Sbjct: 127035 catacataacattaataata 127054

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>gb|AC159546.4| Mus musculus 6 BAC RP23-450B23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 192227

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 581    aaggaagcttgaggaccatt 600
              ||||||||||||||||||||
Sbjct: 155742 aaggaagcttgaggaccatt 155761

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>dbj|AK126161.1| Homo sapiens cDNA FLJ44173 fis, clone THYMU2036105
          Length = 2921

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 aaaaaggttgggaagcagct 257
           ||||||||||||||||||||
Sbjct: 609 aaaaaggttgggaagcagct 628

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>gb|AC026789.5| Homo sapiens chromosome 5 clone CTD-2219P2, complete sequence
          Length = 176072

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 446    ccagatgagattctcctcctgttc 469
              |||||||||| |||||||||||||
Sbjct: 101978 ccagatgagactctcctcctgttc 101955

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>gb|AC026727.6| Homo sapiens chromosome 5 clone CTD-2258D6, complete sequence
          Length = 176072

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 446    ccagatgagattctcctcctgttc 469
              |||||||||| |||||||||||||
Sbjct: 101978 ccagatgagactctcctcctgttc 101955

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>gb|AF420083.1| Nerodia erythrogaster NADH dehydrogenase subunit 2 gene, complete
            cds; mitochondrial gene for mitochondrial product
          Length = 1029

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    aacaataataacctccctcc 20
            ||||||||||||||||||||
Sbjct: 984  aacaataataacctccctcc 1003

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>gb|AF384833.1| Nerodia taxispilota NADH dehydrogenase subunit II (ND2) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1014

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   aacaataataacctccctcc 20
           ||||||||||||||||||||
Sbjct: 973 aacaataataacctccctcc 992

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>gb|AF384831.1| Nerodia erythrogaster NADH dehydrogenase subunit II (ND2) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1014

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   aacaataataacctccctcc 20
           ||||||||||||||||||||
Sbjct: 973 aacaataataacctccctcc 992

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>gb|BT006375.1| Arabidopsis thaliana At1g72880 gene, complete cds
          Length = 1158

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 138 actgcctacacatgctttgctttg 161
           ||||||| ||||||||||||||||
Sbjct: 769 actgcctccacatgctttgctttg 746

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>gb|AF350318.1| Amaranthus tricolor copia-like retrotransposon C10, partial
           sequence
          Length = 1284

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 atcatcttcttccattccaa 220
           ||||||||||||||||||||
Sbjct: 354 atcatcttcttccattccaa 335

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>gb|AC008549.6|AC008549 Homo sapiens chromosome 5 clone CTC-505O3, complete sequence
          Length = 205342

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 446   ccagatgagattctcctcctgttc 469
             |||||||||| |||||||||||||
Sbjct: 47792 ccagatgagactctcctcctgttc 47769

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>emb|BX816834.1|CNS0AD65 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH70ZE11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1626

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 138 actgcctacacatgctttgctttg 161
           ||||||| ||||||||||||||||
Sbjct: 981 actgcctccacatgctttgctttg 958

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>emb|BX830006.1|CNS0A1IY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB52ZF06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 644

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 atcttgcattcaaggccatt 552
           ||||||||||||||||||||
Sbjct: 207 atcttgcattcaaggccatt 188

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>emb|BX832976.1|CNS0A0BE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZC11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 936

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 atcttgcattcaaggccatt 552
           ||||||||||||||||||||
Sbjct: 511 atcttgcattcaaggccatt 492

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>emb|AJ292057.1|ECO292057 Populus deltoides 5S rRNA gene, clone Pd-G48-20(R)
          Length = 428

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 tttgctttggttggtattta 172
           ||||||||||||||||||||
Sbjct: 263 tttgctttggttggtattta 244

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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 47      attctcttctgggcatacataacattaa 74
               |||||||| |||||||||||||| ||||
Sbjct: 1046295 attctcttttgggcatacataactttaa 1046268

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>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5, complete
              sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     catacataacattaataata 79
              ||||||||||||||||||||
Sbjct: 139037 catacataacattaataata 139018

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>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete
             sequence
          Length = 116944

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   actgcctacacatgctttgctttg 161
             ||||||| ||||||||||||||||
Sbjct: 27024 actgcctccacatgctttgctttg 27047

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>gb|AC004701.1|AC004701 Homo sapiens chromosome 4 clone B331M8 map 4q25, complete sequence
          Length = 143839

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 65    ataacattaataatatacacattt 88
             |||| |||||||||||||||||||
Sbjct: 52893 ataatattaataatatacacattt 52870

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      agcagcgacggcggcatcgc 110
               ||||||||||||||||||||
Sbjct: 1965994 agcagcgacggcggcatcgc 1966013

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>emb|AL683811.6| Mouse DNA sequence from clone RP23-291K22 on chromosome 4, complete
              sequence
          Length = 171213

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 581    aaggaagcttgaggaccatt 600
              ||||||||||||||||||||
Sbjct: 114372 aaggaagcttgaggaccatt 114353

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>emb|AL845173.4| Mouse DNA sequence from clone RP23-322G1 on chromosome 2, complete
              sequence
          Length = 194770

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 582    aggaagcttgaggaccattg 601
              ||||||||||||||||||||
Sbjct: 188322 aggaagcttgaggaccattg 188341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,183,133
Number of Sequences: 3902068
Number of extensions: 6183133
Number of successful extensions: 120308
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119968
Number of HSP's gapped (non-prelim): 340
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result