ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13k19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACVS_CEPAC (P25464) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D... 29 2.5
2PUR2_RHIME (Q92RL0) Phosphoribosylamine--glycine ligase (EC 6.3.... 28 4.2
3AHR_DELLE (Q95LD9) Aryl hydrocarbon receptor precursor (Ah recep... 28 7.2
4BGLS_RUMAL (P15885) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)... 28 7.2
5S13A4_HUMAN (Q9UKG4) Solute carrier family 13 member 4 (Na(+)/su... 28 7.2
6SQT1_CAEEL (P12114) Cuticle collagen sqt-1 (Protein squat-1) (Pr... 28 7.2
7N2DL4_HUMAN (Q8TD07) NKG2D ligand 4 precursor (NKG2D ligand 4) (... 27 9.3
8PSF2_YEAST (P40359) DNA replication complex GINS protein PSF2 (P... 27 9.3

>ACVS_CEPAC (P25464) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine|
           synthase (EC 6.3.2.26)
           (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
           synthetase) (ACV synthetase) (ACVS)
          Length = 3712

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 196 PFFDRR---TKLTAYQDLLEINQHALQLVSGFDLLPEIHSAPLPTCTKDDQDQVTQRGVH 366
           P FD     + L+A  +LL       QLV   +LLPE   A L      D D  T++ +H
Sbjct: 204 PLFDTMVIDSFLSALHNLLSAVTKPSQLVRDIELLPEYQVAQLEKWNNTDGDYPTEKRLH 263



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>PUR2_RHIME (Q92RL0) Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS)|
           (Glycinamide ribonucleotide synthetase)
           (Phosphoribosylglycinamide synthetase)
          Length = 423

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
 Frame = +2

Query: 50  KMTMIRFGAREYSLVQHISSTP*-TRRWEAKGKG------------REPLAQAISFCTFH 190
           K+ +I  G RE++L   I+ +P  T+ + A G               E     + FC  H
Sbjct: 2   KVLLIGSGGREHALAWKIAQSPRLTKLYAAPGNPGIAEEAAIVDLHTENHEDVVDFCRTH 61

Query: 191 AVPFLIEGP 217
           A+ F++ GP
Sbjct: 62  AIDFVVVGP 70



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>AHR_DELLE (Q95LD9) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)|
          Length = 845

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 331 PWCKSEVVLNESQGANQIHSPT--GAHAGLFPTN 236
           P    +++ +E  G +Q  +PT  G HAGLFP N
Sbjct: 498 PMGSDDILKHEQIGQSQEMNPTLSGDHAGLFPDN 531



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>BGLS_RUMAL (P15885) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)|
           (Beta-D-glucoside glucohydrolase)
          Length = 947

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 367 HAHPFGSPGPGHPWCKSEVVLNES 296
           H + +G    G PWC+ E+ L++S
Sbjct: 93  HPYDYGEGWGGEPWCQEEMPLDDS 116



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>S13A4_HUMAN (Q9UKG4) Solute carrier family 13 member 4 (Na(+)/sulfate|
           cotransporter SUT-1)
          Length = 627

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 347 TWSWSSLVQVGSGAE*ISGSKSNPLTNW 264
           T  W  ++ VG G    SGSKS+ L+ W
Sbjct: 462 TMPWEIVILVGGGYALASGSKSSGLSTW 489



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>SQT1_CAEEL (P12114) Cuticle collagen sqt-1 (Protein squat-1) (Protein|
           roller-5)
          Length = 324

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 361 HPFGSPGPGHPWCKSEVVLNESQGANQIHSPTGAHAGLFPTNP 233
           HP G PGP  P  + +       G N +H P G    + P  P
Sbjct: 234 HPIGGPGPKGP--RGDQGPTGPAGQNGLHGPPGEPGTVGPEGP 274



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>N2DL4_HUMAN (Q8TD07) NKG2D ligand 4 precursor (NKG2D ligand 4) (NKG2DL4)|
           (N2DL-4) (Retinoic acid early transcript 1E) (Lymphocyte
           effector toxicity activation ligand) (RAE-1-like
           transcript 4) (RL-4)
          Length = 263

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 340 PGHPWCKSEVVLNES 296
           PG PWC+++V LN++
Sbjct: 45  PGQPWCEAQVFLNKN 59



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>PSF2_YEAST (P40359) DNA replication complex GINS protein PSF2 (Partner of Sld|
           five 2)
          Length = 213

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 238 LLEINQHALQLVSGFDLLPEIHSAPLPTCTKDDQDQ 345
           LLEIN+    +    D L EIH+A L   T++D+++
Sbjct: 175 LLEINELRPFITEIMDKLREIHTASLTAGTENDEEE 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,802,452
Number of Sequences: 219361
Number of extensions: 1209096
Number of successful extensions: 2879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2876
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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