ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13k19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 200 tttttgatcgaaggaccaaactgactgcatatcaggatttgttg 243 |||||||| ||| |||||||||||||| | ||||||||| |||| Sbjct: 649916 tttttgattgaacgaccaaactgactgtacatcaggattagttg 649873 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gtccaacatatctcctcaactccctaaact 121 |||||||||||| |||||||| |||||||| Sbjct: 650004 gtccaacatatcacctcaacttcctaaact 649975
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 200 tttttgatcgaaggaccaaactgactgcatatcaggatttgttg 243 |||||||| ||| |||||||||||||| | ||||||||| |||| Sbjct: 614163 tttttgattgaacgaccaaactgactgtacatcaggattagttg 614120 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gtccaacatatctcctcaactccctaaact 121 |||||||||||| |||||||| |||||||| Sbjct: 614251 gtccaacatatcacctcaacttcctaaact 614222
>dbj|AK068644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158J09, full insert sequence Length = 3185 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 200 tttttgatcgaaggaccaaactgactgcatatcaggatttgttg 243 |||||||| ||| |||||||||||||| | ||||||||| |||| Sbjct: 2745 tttttgattgaacgaccaaactgactgtacatcaggattagttg 2702 Score = 42.1 bits (21), Expect = 1.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 292 cctgagattcattcagcaccacttccgacttgcaccaaggatgaccagg 340 |||||| | |||||||||||||| || |||| |||||| ||||||||| Sbjct: 2647 cctgaggtccattcagcaccactgcctccttggaccaagaatgaccagg 2599
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 200 tttttgatcgaaggaccaaactgactgcatatcaggatttgttg 243 |||||||| ||| |||||||||||||| | ||||||||| |||| Sbjct: 614163 tttttgattgaacgaccaaactgactgtacatcaggattagttg 614120 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gtccaacatatctcctcaactccctaaact 121 |||||||||||| |||||||| |||||||| Sbjct: 614251 gtccaacatatcacctcaacttcctaaact 614222
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 200 tttttgatcgaaggaccaaactgactgcatatcaggatttgttg 243 |||||||| ||| |||||||||||||| | ||||||||| |||| Sbjct: 649916 tttttgattgaacgaccaaactgactgtacatcaggattagttg 649873 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gtccaacatatctcctcaactccctaaact 121 |||||||||||| |||||||| |||||||| Sbjct: 650004 gtccaacatatcacctcaacttcctaaact 649975
>emb|BX571785.1|CNS09SBO Oryza sativa chromosome 12, . Partial sequence from PAC 1 of BAC OSJNBb0027O09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 14570 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 200 tttttgatcgaaggaccaaactgactgcatatcaggatttgttg 243 |||||||| ||| |||||||||||||| | ||||||||| |||| Sbjct: 3062 tttttgattgaacgaccaaactgactgtacatcaggattagttg 3019 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gtccaacatatctcctcaactccctaaact 121 |||||||||||| |||||||| |||||||| Sbjct: 3150 gtccaacatatcacctcaacttcctaaact 3121
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 200 tttttgatcgaaggaccaaactgactgcatatcaggatttgttg 243 |||||||| ||| |||||||||||||| | ||||||||| |||| Sbjct: 128809 tttttgattgaacgaccaaactgactgtacatcaggattagttg 128852 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 92 gtccaacatatctcctcaactccctaaact 121 |||||||||||| |||||||| |||||||| Sbjct: 128721 gtccaacatatcacctcaacttcctaaact 128750
>emb|AL808025.4| Mouse DNA sequence from clone RP23-45M22 on chromosome X, complete sequence Length = 227581 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 133 ggcaaaagggaagggaagggag 154 |||||||||||||||||||||| Sbjct: 79161 ggcaaaagggaagggaagggag 79182
>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence Length = 188649 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 17060 gggaggaaaaagggaagggaaggga 17036 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 17009 gggaggaaaaagggaagggaaggga 16985 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 16903 gggaggaaaaagggaagggaaggga 16879 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 16862 gggaggaaaaagggaagggaaggga 16838
>gb|AC098706.3| Mus musculus BAC clone RP23-1I11 from 14, complete sequence Length = 234326 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 156747 gggagggaaaagggaagggaaggga 156771
>gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence Length = 200062 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 aaagggaagggaagggagccc 157 ||||||||||||||||||||| Sbjct: 98037 aaagggaagggaagggagccc 98017
>emb|Z35159.1|SCGTPAP S.cerevisiae (S288C) IPL2 gene for GTPase activating protein Length = 7053 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 tcaggatttgttggaaataaa 251 ||||||||||||||||||||| Sbjct: 2345 tcaggatttgttggaaataaa 2325
>gb|AC091958.3| Homo sapiens chromosome 5 clone RP11-447B18, complete sequence Length = 123567 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 14260 gggagggaaaagggaagggaaggga 14284
>dbj|AK148624.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120425M12 product:unclassifiable, full insert sequence Length = 1682 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 412 gggaggaaaaagggaagggaaggga 436
>gb|AC159302.3| Mus musculus BAC clone RP23-238C13 from chromosome 8, complete sequence Length = 183988 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 154161 gggaggaaaaagggaagggaaggga 154185
>gb|AC158399.2| Mus musculus BAC clone RP23-246A2 from chromosome 14, complete sequence Length = 198948 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 ggcaaaagggaagggaaggga 153 ||||||||||||||||||||| Sbjct: 158277 ggcaaaagggaagggaaggga 158297
>gb|AC154724.2| Mus musculus BAC clone RP23-125I9 from chromosome 14, complete sequence Length = 177085 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 136393 gggagggaaaagggaagggaaggga 136369
>gb|AC140058.5| Homo sapiens 3 BAC RP13-1007C7 (Roswell park Cancer Institute Human BAC Library) complete sequence Length = 62693 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 gtgggaggcaaaagggaagggaagg 151 ||||||||||| ||||||||||||| Sbjct: 248 gtgggaggcaagagggaagggaagg 272
>gb|U18917.1|SCE8229 Saccharomyces cerevisiae chromosome V cosmids 8229, 9115, 9132, 9981, and lambda clones 7990 and 6134 Length = 67883 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 tcaggatttgttggaaataaa 251 ||||||||||||||||||||| Sbjct: 38851 tcaggatttgttggaaataaa 38871
>gb|AC002123.1|AC002123 Human BAC clone GS1-312P20 from 5p15.2, complete sequence Length = 166531 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 69529 gggagggaaaagggaagggaaggga 69505
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 gggaggcaaaagggaagggaaggga 153 |||||| |||||||||||||||||| Sbjct: 212788 gggaggaaaaagggaagggaaggga 212764
>emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061C18 on chromosome 3p36.22-36.33 Contains the 5' part of the DLG1 gene encoding the discs protein (large Drosophila homolog 1, presynaptic protein SAP97) and a CpG island, complete sequence Length = 148493 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gtgggaggcaaaagggaagggaagg 151 ||||||||||| ||||||||||||| Sbjct: 42415 gtgggaggcaagagggaagggaagg 42391
>gb|L33832.1|YSCBEM2 Saccharomyces cerevisiae bud-emergence protein (BEM2) gene, complete cds Length = 6999 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 tcaggatttgttggaaataaa 251 ||||||||||||||||||||| Sbjct: 2285 tcaggatttgttggaaataaa 2265
>ref|XM_636077.1| Dictyostelium discoideum hypothetical protein (DDB0205193), partial mRNA Length = 3243 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 aggatttgttggaaataaac 252 |||||||||||||||||||| Sbjct: 2619 aggatttgttggaaataaac 2638
>gb|AC115906.6| Mus musculus chromosome 8, clone RP24-476M14, complete sequence Length = 145246 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 taaataaaatgactatgatt 64 |||||||||||||||||||| Sbjct: 28578 taaataaaatgactatgatt 28559
>gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, complete sequence Length = 197827 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgggaggcaaaagggaaggg 147 |||||||||||||||||||| Sbjct: 103365 tgggaggcaaaagggaaggg 103384
>ref|XM_799033.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509623.10) partial mRNA Length = 1428 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 aagggaagggaagggagccc 157 |||||||||||||||||||| Sbjct: 46 aagggaagggaagggagccc 65
>gb|AF355137.1| Papio hamadryas clone PHA1F5 beta-tubulin 4Q (TUBB4Q) pseudogene, partial sequence Length = 2770 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acatgaggtgagcgcaccat 26 |||||||||||||||||||| Sbjct: 1509 acatgaggtgagcgcaccat 1490
>gb|AF355132.1| Papio hamadryas clone PHA140N17 beta-tubulin 4Q (TUBB4Q) pseudogene, partial sequence Length = 2792 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acatgaggtgagcgcaccat 26 |||||||||||||||||||| Sbjct: 1497 acatgaggtgagcgcaccat 1478
>gb|AC127313.3| Mus musculus BAC clone RP23-311A21 from 5, complete sequence Length = 195651 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 aagggaagggaagggagccc 157 |||||||||||||||||||| Sbjct: 100384 aagggaagggaagggagccc 100403
>emb|AL663066.12| Mouse DNA sequence from clone RP23-416K12 on chromosome 11 Contains the 5' end of a novel genes, an H+ transporting ATPase V1 subunit G isoform 1 (Atp6v1g1) pseudogene, an upstream transcription factor 1 (Usf1) pseudogene, the 5' end of the Ssh2 gene for slingshot homolog 2 (Drosophila) and a CpG island, complete sequence Length = 160589 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ggaggcaaaagggaagggaaggga 153 ||||| |||||||||||||||||| Sbjct: 66822 ggagggaaaagggaagggaaggga 66799
>gb|AC120387.5| Mus musculus chromosome 8, clone RP24-299O22, complete sequence Length = 163623 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 taaataaaatgactatgatt 64 |||||||||||||||||||| Sbjct: 109569 taaataaaatgactatgatt 109550
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tgtgaggatatcactaaata 50 |||||||||||||||||||| Sbjct: 541681 tgtgaggatatcactaaata 541662
>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete sequence Length = 252440 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ggaagggagcccttggctca 165 |||||||||||||||||||| Sbjct: 193375 ggaagggagcccttggctca 193356
>ref|NM_137977.2| Drosophila melanogaster CG11299-RA (CG11299), mRNA Length = 3079 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 gatgaccaggaccaggtgacccaa 354 ||||||| |||||||||||||||| Sbjct: 1150 gatgacctggaccaggtgacccaa 1173
>gb|AC017100.4| Homo sapiens BAC clone RP11-549B18 from 18, complete sequence Length = 202950 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 tttgttggaaataaaccagcatgc 260 |||||||||||||| ||||||||| Sbjct: 72166 tttgttggaaataacccagcatgc 72189
>gb|AY069626.1| Drosophila melanogaster LD39604 full length cDNA Length = 3112 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 gatgaccaggaccaggtgacccaa 354 ||||||| |||||||||||||||| Sbjct: 1150 gatgacctggaccaggtgacccaa 1173
>gb|AC157924.6| Mus musculus chromosome 1, clone RP23-18J18, complete sequence Length = 206156 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 caaaagggaagggaagggag 154 |||||||||||||||||||| Sbjct: 136515 caaaagggaagggaagggag 136496
>gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, region 59F5-59F8, BAC clone BACR02E09, complete sequence Length = 175118 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 gatgaccaggaccaggtgacccaa 354 ||||||| |||||||||||||||| Sbjct: 72691 gatgacctggaccaggtgacccaa 72714
>gb|AC107869.15| Mus musculus chromosome 1, clone RP23-418L6, complete sequence Length = 182061 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 caaaagggaagggaagggag 154 |||||||||||||||||||| Sbjct: 155868 caaaagggaagggaagggag 155849
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 gatgaccaggaccaggtgacccaa 354 ||||||| |||||||||||||||| Sbjct: 250289 gatgacctggaccaggtgacccaa 250312
>gb|AC005358.1|AC005358 Homo sapiens chromosome 17, clone hRPK.746_E_8, complete sequence Length = 184886 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 aagggaagggaagggagccc 157 |||||||||||||||||||| Sbjct: 33281 aagggaagggaagggagccc 33300
>gb|AC137516.3| Mus musculus BAC clone RP23-259P18 from 1, complete sequence Length = 162037 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 126 ggtgggaggcaaaagggaagggaaggga 153 |||||| |||| |||||||||||||||| Sbjct: 113135 ggtggggggcagaagggaagggaaggga 113108
>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete sequence Length = 230674 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 agaaggtgggaggcaaaagg 141 |||||||||||||||||||| Sbjct: 95479 agaaggtgggaggcaaaagg 95460
>dbj|AB055342.1| Macaca fascicularis brain cDNA, clone:QflA-11322 Length = 2182 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 agaaggtgggaggcaaaagg 141 |||||||||||||||||||| Sbjct: 1080 agaaggtgggaggcaaaagg 1099 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,611,835 Number of Sequences: 3902068 Number of extensions: 3611835 Number of successful extensions: 126693 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126251 Number of HSP's gapped (non-prelim): 442 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
