ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13k15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2 31 4.0
2SIF1_DROME (P91621) Protein still life, isoform SIF type 1 31 4.0

>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2|
          Length = 2061

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 286  QGNQFSQRGTKGSKIQLGCPMLQVTFSTWSTLQEQRN*QHAR--RSSEAPSNKQPFMI 453
            +G + SQ+GT   K  LG     +T ST STL        AR  +SS  P++ QP ++
Sbjct: 1973 EGEEDSQQGTIRPKATLGRTPNHLTLSTTSTLSVGSTGSQARLIQSSHPPASYQPVLM 2030



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>SIF1_DROME (P91621) Protein still life, isoform SIF type 1|
          Length = 2072

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 286  QGNQFSQRGTKGSKIQLGCPMLQVTFSTWSTLQEQRN*QHAR--RSSEAPSNKQPFMI 453
            +G + SQ+GT   K  LG     +T ST STL        AR  +SS  P++ QP ++
Sbjct: 1984 EGEEDSQQGTIRPKATLGRTPNHLTLSTTSTLSVGSTGSQARLIQSSHPPASYQPVLM 2041


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,891,441
Number of Sequences: 219361
Number of extensions: 1778902
Number of successful extensions: 4006
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4002
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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