ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13k12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 238 1e-59
2gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
3gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 70 6e-09
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
5dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
6dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
8dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
9gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.022
10gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.022
11gb|AY107519.1| Zea mays PCO078033 mRNA sequence 48 0.022
12ref|XM_478005.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.34
13ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.34
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
15dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
16dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
17gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete s... 40 5.3
18gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complet... 40 5.3
19gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 40 5.3
20gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Canc... 40 5.3
21emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chr... 40 5.3
22emb|AL732482.8| Mouse DNA sequence from clone RP23-199C21 on chr... 40 5.3 
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  238 bits (120), Expect = 1e-59
 Identities = 201/229 (87%)
 Strand = Plus / Minus

                                                                       
Query: 169 tttccccccatttcgcgggacggaatggccttcttgcattgagacaggatattgatgcaa 228
           ||||| |||||||| ||||| || |||||||||||||||||||  ||||| |||||||||
Sbjct: 304 tttcctcccatttctcgggaaggtatggccttcttgcattgagcgaggatcttgatgcaa 245

                                                                       
Query: 229 tcttcgtcactccagaagtgcagaacaagcttaagcatgagaacttgancaggtggaatg 288
           || ||||| ||||||||||| ||||||||||| |||||||   | ||| | ||||| | |
Sbjct: 244 tcctcgtcgctccagaagtgtagaacaagcttgagcatgacggcctgagctggtgggacg 185

                                                                       
Query: 289 gcatggaataggtcaccagcaacatagntaacgataccatcacttggaactttctcgatc 348
           | |||||| ||||||||||| |||||| |||| | |||||||||||| ||||||||||||
Sbjct: 184 gtatggaagaggtcaccagcgacatagttaacaacaccatcacttgggactttctcgatc 125

                                                            
Query: 349 accttcngaaggtccaacacattgcacttgatatgcgggaaggccttga 397
           |||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acctttggaaggtccaacacattgcacttgatatgcgggaaggccttga 76



 Score =  111 bits (56), Expect = 2e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgacaatcttatagtcgctaaatcctgcttttgtaaagattgagctccagtcattttca 60
           |||||||||||||||| |||||| |||||||| |||||||| | |||||| || ||||||
Sbjct: 472 ttgacaatcttatagttgctaaaccctgctttcgtaaagatcgtgctccactccttttca 413

                                                                      
Query: 61  tctcgttgccgtccttttgnacataccaacatgagcatatccatcaacagttcggtttc 119
           || |||||||||||| | | |||||  ||||| ||||| ||||||| ||||||||||||
Sbjct: 412 tcccgttgccgtcctctggtacatatgaacatcagcatgtccatcagcagttcggtttc 354
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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                          
Query: 300    gtcaccagcaacatagntaacgataccatcacttggaactttctcgatcaccttcngaag 359
              |||||| ||||||||| |||||| ||||||| | ||  | || |||||||||||  ||||
Sbjct: 119655 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 119596

                                                   
Query: 360    gtccaacacattgcacttgatatgcgggaaggccttg 396
              ||||| |||| ||||||||| ||| ||| ||||||||
Sbjct: 119595 gtccagcacagtgcacttgacatgagggtaggccttg 119559



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 43/51 (84%)
 Strand = Plus / Minus

                                                                 
Query: 56     tttcatctcgttgccgtccttttgnacataccaacatgagcatatccatca 106
              |||||||||| ||||| ||| ||| |   |||||||| |||||||||||||
Sbjct: 123069 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 123019
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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 300  gtcaccagcaacatagntaacgataccatcacttggaactttctcgatcaccttcngaag 359
            |||||| ||||||||| |||||| ||||||| | ||  | || |||||||||||  ||||
Sbjct: 5404 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 5345

                                                 
Query: 360  gtccaacacattgcacttgatatgcgggaaggccttg 396
            ||||| |||| ||||||||| ||| ||| ||||||||
Sbjct: 5344 gtccagcacagtgcacttgacatgagggtaggccttg 5308



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 43/51 (84%)
 Strand = Plus / Minus

                                                               
Query: 56   tttcatctcgttgccgtccttttgnacataccaacatgagcatatccatca 106
            |||||||||| ||||| ||| ||| |   |||||||| |||||||||||||
Sbjct: 8818 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 8768
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                            
Query: 300      gtcaccagcaacatagntaacgataccatcacttggaactttctcgatcaccttcngaag 359
                |||||| ||||||||| |||||| ||||||| | ||  | || |||||||||||  ||||
Sbjct: 11494133 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11494192

                                                     
Query: 360      gtccaacacattgcacttgatatgcgggaaggccttg 396
                ||||| |||| ||||||||| ||| ||| ||||||||
Sbjct: 11494193 gtccagcacagtgcacttgacatgagggtaggccttg 11494229



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 343     tcgatcaccttcngaaggtccaacacattgcacttgatatgcgggaa 389
               |||||||||||| | ||||||| |||  |||||||||| ||||||||
Sbjct: 7138295 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 7138341



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 43/51 (84%)
 Strand = Plus / Plus

                                                                   
Query: 56       tttcatctcgttgccgtccttttgnacataccaacatgagcatatccatca 106
                |||||||||| ||||| ||| ||| |   |||||||| |||||||||||||
Sbjct: 11490719 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11490769
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>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
           insert sequence
          Length = 1362

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                       
Query: 300 gtcaccagcaacatagntaacgataccatcacttggaactttctcgatcaccttcngaag 359
           |||||| ||||||||| |||||| ||||||| | ||  | || |||||||||||  ||||
Sbjct: 815 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 756

                                                
Query: 360 gtccaacacattgcacttgatatgcgggaaggccttg 396
           ||||| |||| ||||||||| ||| ||| ||||||||
Sbjct: 755 gtccagcacagtgcacttgacatgagggtaggccttg 719



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 43/51 (84%)
 Strand = Plus / Minus

                                                               
Query: 56   tttcatctcgttgccgtccttttgnacataccaacatgagcatatccatca 106
            |||||||||| ||||| ||| ||| |   |||||||| |||||||||||||
Sbjct: 1062 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1012
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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
           insert sequence
          Length = 1264

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                       
Query: 300 gtcaccagcaacatagntaacgataccatcacttggaactttctcgatcaccttcngaag 359
           |||||| ||||||||| |||||| ||||||| | ||  | || |||||||||||  ||||
Sbjct: 820 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 761

                                                
Query: 360 gtccaacacattgcacttgatatgcgggaaggccttg 396
           ||||| |||| ||||||||| ||| ||| ||||||||
Sbjct: 760 gtccagcacagtgcacttgacatgagggtaggccttg 724



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 43/51 (84%)
 Strand = Plus / Minus

                                                               
Query: 56   tttcatctcgttgccgtccttttgnacataccaacatgagcatatccatca 106
            |||||||||| ||||| ||| ||| |   |||||||| |||||||||||||
Sbjct: 1067 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 1017
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                            
Query: 300      gtcaccagcaacatagntaacgataccatcacttggaactttctcgatcaccttcngaag 359
                |||||| ||||||||| |||||| ||||||| | ||  | || |||||||||||  ||||
Sbjct: 11573322 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11573381

                                                     
Query: 360      gtccaacacattgcacttgatatgcgggaaggccttg 396
                ||||| |||| ||||||||| ||| ||| ||||||||
Sbjct: 11573382 gtccagcacagtgcacttgacatgagggtaggccttg 11573418



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 343     tcgatcaccttcngaaggtccaacacattgcacttgatatgcgggaa 389
               |||||||||||| | ||||||| |||  |||||||||| ||||||||
Sbjct: 7204266 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 7204312



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 43/51 (84%)
 Strand = Plus / Plus

                                                                   
Query: 56       tttcatctcgttgccgtccttttgnacataccaacatgagcatatccatca 106
                |||||||||| ||||| ||| ||| |   |||||||| |||||||||||||
Sbjct: 11569908 tttcatctcgctgccggcctcttgtattgaccaacatcagcatatccatca 11569958
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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 86/106 (81%)
 Strand = Plus / Minus

                                                                       
Query: 226 caatcttcgtcactccagaagtgcagaacaagcttaagcatgagaacttgancaggtgga 285
           ||||| ||||||||||||  ||| || |||||||| ||||||| | ||||| ||||||| 
Sbjct: 906 caatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttgagcaggtggg 847

                                                         
Query: 286 atggcatggaataggtcaccagcaacatagntaacgataccatcac 331
           |||||  |||| | |||||| || |||||| | || | ||||||||
Sbjct: 846 atggcgcggaacatgtcacccgctacatagttcaccacaccatcac 801
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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 343   tcgatcaccttcngaaggtccaacacattgcacttgatatgcgggaa 389
             |||||||||||| | ||||||| |||  |||||||||| ||||||||
Sbjct: 44260 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 44214
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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 343   tcgatcaccttcngaaggtccaacacattgcacttgatatgcgggaa 389
             |||||||||||| | ||||||| |||  |||||||||| ||||||||
Sbjct: 51515 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 51561
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>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 213 caggatattgatgcaatcttcgtcactccagaagtgcagaacaagcttaagcatga 268
           |||||| |||| ||| || ||||| |||||||||||||| || ||||| |||||||
Sbjct: 854 caggatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagcatga 799
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>ref|XM_478005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1026

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 356 gaaggtccaacacattgcacttgatatgcgggaa 389
           ||||||||| |||  |||||||||||||||||||
Sbjct: 643 gaaggtccagcaccgtgcacttgatatgcgggaa 610
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>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 356 gaaggtccaacacattgcacttgatatgcgggaa 389
           ||||||||| |||  |||||||||||||||||||
Sbjct: 673 gaaggtccagcacggtgcacttgatatgcgggaa 640
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 356      gaaggtccaacacattgcacttgatatgcgggaa 389
                ||||||||| |||  |||||||||||||||||||
Sbjct: 16295258 gaaggtccagcaccgtgcacttgatatgcgggaa 16295291



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 356      gaaggtccaacacattgcacttgatatgcgggaa 389
                ||||||||| |||  |||||||||||||||||||
Sbjct: 16264585 gaaggtccagcacggtgcacttgatatgcgggaa 16264618



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 356      gaaggtccaacacattgcacttgatatgcgggaa 389
                ||||||||| |||  |||||||||||||||||||
Sbjct: 16220132 gaaggtccagcacggtgcacttgatatgcgggaa 16220099
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>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0473C09
          Length = 141066

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 356  gaaggtccaacacattgcacttgatatgcgggaa 389
            ||||||||| |||  |||||||||||||||||||
Sbjct: 1314 gaaggtccagcaccgtgcacttgatatgcgggaa 1347
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>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1634_H04
          Length = 151699

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 356    gaaggtccaacacattgcacttgatatgcgggaa 389
              ||||||||| |||  |||||||||||||||||||
Sbjct: 115696 gaaggtccagcaccgtgcacttgatatgcgggaa 115729



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 356   gaaggtccaacacattgcacttgatatgcgggaa 389
             ||||||||| |||  |||||||||||||||||||
Sbjct: 85023 gaaggtccagcacggtgcacttgatatgcgggaa 85056



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 356   gaaggtccaacacattgcacttgatatgcgggaa 389
             ||||||||| |||  |||||||||||||||||||
Sbjct: 40570 gaaggtccagcacggtgcacttgatatgcgggaa 40537
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>gb|AC024777.1| Caenorhabditis elegans cosmid Y42H9AR, complete sequence
          Length = 15915

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ttcggtttctaatatttctt 130
            ||||||||||||||||||||
Sbjct: 3670 ttcggtttctaatatttctt 3689
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>gb|AC121981.3| Mus musculus BAC clone RP24-290K9 from 5, complete sequence
          Length = 184908

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gacaggatattgatgcaatc 230
             ||||||||||||||||||||
Sbjct: 89926 gacaggatattgatgcaatc 89907
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>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 1    ttgacaatcttatagtcgctaaatcctgcttt 32
            |||||||| || ||||||||||| ||||||||
Sbjct: 1099 ttgacaattttgtagtcgctaaaccctgcttt 1068
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>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119034

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   atttctttggatgatgagcc 143
             ||||||||||||||||||||
Sbjct: 43678 atttctttggatgatgagcc 43659
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>emb|AL840639.3| Mouse DNA sequence from clone RP23-156E17 on chromosome 2, complete
             sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   aacaataacctttccccccatttc 182
             |||||||||||||||| |||||||
Sbjct: 17596 aacaataacctttcccaccatttc 17619
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>emb|AL732482.8| Mouse DNA sequence from clone RP23-199C21 on chromosome 4, complete
              sequence
          Length = 191239

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ccatcacttggaactttctc 344
              ||||||||||||||||||||
Sbjct: 149587 ccatcacttggaactttctc 149606


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,028,701
Number of Sequences: 3902068
Number of extensions: 3028701
Number of successful extensions: 54618
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54396
Number of HSP's gapped (non-prelim): 221
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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