ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd13k09 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 197 bits (502), Expect = 2e-50 Identities = 99/118 (83%), Positives = 99/118 (83%) Frame = -3 Query: 587 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPSLVIXXXXXXXVQTAQPYGPGGGVAFK 408 MSACVM LQRSKLGGVRPSARPSLVI VQTAQPYGPGGGVAFK Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60 Query: 407 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 234 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT Sbjct: 61 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 119 bits (298), Expect = 7e-27 Identities = 53/73 (72%), Positives = 61/73 (83%) Frame = -3 Query: 452 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 273 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 272 VGGKTGLFLWAVT 234 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 119 bits (298), Expect = 7e-27 Identities = 53/73 (72%), Positives = 61/73 (83%) Frame = -3 Query: 452 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 273 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 272 VGGKTGLFLWAVT 234 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 118 bits (295), Expect = 2e-26 Identities = 52/73 (71%), Positives = 61/73 (83%) Frame = -3 Query: 452 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 273 +T +PYG G ++ ++GVDASGR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVY Sbjct: 44 KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103 Query: 272 VGGKTGLFLWAVT 234 VGG TGL +WAVT Sbjct: 104 VGGTTGLAIWAVT 116
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 114 bits (284), Expect = 3e-25 Identities = 56/120 (46%), Positives = 72/120 (60%), Gaps = 2/120 (1%) Frame = -3 Query: 587 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPS--LVIXXXXXXXVQTAQPYGPGGGVA 414 M+ VM +S + G+ +R S + ++ +P G GGG+ Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 413 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 234 ++GVD+SGR GKGVYQF DKYGANVDGYSPIY EEW+P+GDVY GG TGL +WAVT Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 112 bits (279), Expect = 1e-24 Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 3/121 (2%) Frame = -3 Query: 587 MSACVMXXXXXXXXXXXXLQRSKLGGVRPS---ARPSLVIXXXXXXXVQTAQPYGPGGGV 417 M+A VM ++++ G+ PS ARPS I ++T +P+G G + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGL-PSLTRARPSFKIVASGVKKIKTDKPFGINGSM 59 Query: 416 AFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 237 ++GVDASGR KG GVY++ DKYGANVDGYSPIY EWS SGDVY GG TGL +WAV Sbjct: 60 DLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAV 119 Query: 236 T 234 T Sbjct: 120 T 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 107 bits (267), Expect = 3e-23 Identities = 48/73 (65%), Positives = 57/73 (78%) Frame = -3 Query: 452 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 273 +T +P+G G + ++GVDASGR KG GVY+F DKYGANVDGYSPIY +EWS SGDVY Sbjct: 49 KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108 Query: 272 VGGKTGLFLWAVT 234 GG TGL +WAVT Sbjct: 109 KGGVTGLAIWAVT 121
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 32.0 bits (71), Expect = 1.4 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Frame = +1 Query: 208 APPSRIPA---RVTAQRNSPVFPPT*TSPLGD-----HSSGVYIGLYPSTFAPYLSANW* 363 APP+ +PA V A PV P P+G + P A L+A+W Sbjct: 341 APPAHVPAVPAPVGAPDGGPVRLPGAAVPIGPGPRVADMRAAAVAAPPPESA--LAASWS 398 Query: 364 TPFPLATLPDASTPSLNATPPPG-P*GWAVWTFFAFLATMTND 489 P P D + P+ PP P GW W F M+ND Sbjct: 399 RPRPGVNGADPAVPAPAPAPPEASPAGWRPWRF-----RMSND 436
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 425 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 333 GGV +G A+ R+A+G + FADK GA+ Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430
>ENDD1_MOUSE (Q8C522) Endonuclease domain-containing 1 protein precursor (EC| 3.1.30.-) Length = 501 Score = 30.0 bits (66), Expect = 5.5 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = +1 Query: 73 VVIFVSITYVLTVIIRTIIHIVWCIA 150 + +F I Y++T ++R I+H++W +A Sbjct: 341 IKLFQLIYYLVTAVLRNIVHLLWLVA 366
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -3 Query: 404 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 285 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -2 Query: 405 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGS 238 R R ++GS +GEG P+ VW W Q ++ R + +K KD V LG+ Sbjct: 63 RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115 Query: 237 DSCWNSA 217 + C++S+ Sbjct: 116 EHCYDSS 122
>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| Length = 3034 Score = 29.6 bits (65), Expect = 7.2 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -2 Query: 483 GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 331 GH GQ E D P + WW + V G C + +G P C + +C Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000
>ALB2_PEA (P08688) Albumin-2 (PA2)| Length = 231 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 422 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 327 G F+ G+DA+ R +GK VY F A +D Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145
>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 403 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -3 Query: 452 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 324 QT QPYG V E V+A RVA G+ QFA G ++ G Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +2 Query: 116 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 283 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRK 254
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 29.3 bits (64), Expect = 9.4 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +1 Query: 211 PPSRIPARVTAQRNSPV---FPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 381 PP A T SP+ P SP G G+ P + SA+ P PLA Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570 Query: 382 TLPDASTPSLNATPPPG 432 P +P+LN PPG Sbjct: 571 RPPSTPSPTLNPGSPPG 587
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 29.3 bits (64), Expect = 9.4 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +1 Query: 253 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 420 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259 Query: 421 PPPG 432 PP G Sbjct: 260 PPGG 263
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +1 Query: 223 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 354 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,057,592 Number of Sequences: 219361 Number of extensions: 2118677 Number of successful extensions: 6913 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6276 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6881 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
