ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13k07 |
|---|---|
| Clone Library Name | barley_pub |
>CAPP_BURPS (Q63W75) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = -2 Query: 524 NGSLRTKRRSSFSNSEYP---ESGTKNTPVPSRK-----PSYMAPTESLKAKLRGPPRLD 369 +GS R RR++ S+S P E + P+RK +APT + AK +G R D Sbjct: 4 SGSARATRRNAVSSSSAPAHAEPPARRAAKPARKLDGAAARPLAPTNAASAKPQGRTRED 63 Query: 368 SDLPV 354 D P+ Sbjct: 64 KDRPL 68
>CAPP_BURMA (Q62LC1) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = -2 Query: 524 NGSLRTKRRSSFSNSEYP---ESGTKNTPVPSRK-----PSYMAPTESLKAKLRGPPRLD 369 +GS R RR++ S+S P E + P+RK +APT + AK +G R D Sbjct: 4 SGSARATRRNAVSSSSAPAHAEPPARRAAKPARKLDGAAARPLAPTNAASAKPQGRTRED 63 Query: 368 SDLPV 354 D P+ Sbjct: 64 KDRPL 68
>DSBB_SHIFL (Q54155) Disulfide bond formation protein B (Disulfide| oxidoreductase) Length = 176 Score = 31.2 bits (69), Expect = 2.7 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = -1 Query: 249 KGALLWMKSAAVYLSLYLLFCLRCKHMLLRPF------RAACDDIFGAIFFHELSVVPLS 88 +GA L M A+ L L L+ MLL+P R A + GA ++ P + Sbjct: 12 RGAWLLMAFTALALELTALWFQHV--MLLKPCVLCIYERCALFGVLGAALIG--AIAPKT 67 Query: 87 VLKCIAAVIWLISVLMTTQLTMHY 16 L+ +A VIWL S QLT + Sbjct: 68 PLRYVAMVIWLYSAFRGVQLTYEH 91
>DSBB_ECOLI (P0A6M2) Disulfide bond formation protein B (Disulfide| oxidoreductase) Length = 176 Score = 31.2 bits (69), Expect = 2.7 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = -1 Query: 249 KGALLWMKSAAVYLSLYLLFCLRCKHMLLRPF------RAACDDIFGAIFFHELSVVPLS 88 +GA L M A+ L L L+ MLL+P R A + GA ++ P + Sbjct: 12 RGAWLLMAFTALALELTALWFQHV--MLLKPCVLCIYERCALFGVLGAALIG--AIAPKT 67 Query: 87 VLKCIAAVIWLISVLMTTQLTMHY 16 L+ +A VIWL S QLT + Sbjct: 68 PLRYVAMVIWLYSAFRGVQLTYEH 91
>DSBB_ECOL6 (P59343) Disulfide bond formation protein B (Disulfide| oxidoreductase) Length = 176 Score = 31.2 bits (69), Expect = 2.7 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = -1 Query: 249 KGALLWMKSAAVYLSLYLLFCLRCKHMLLRPF------RAACDDIFGAIFFHELSVVPLS 88 +GA L M A+ L L L+ MLL+P R A + GA ++ P + Sbjct: 12 RGAWLLMAFTALALELTALWFQHV--MLLKPCVLCIYERCALFGVLGAALIG--AIAPKT 67 Query: 87 VLKCIAAVIWLISVLMTTQLTMHY 16 L+ +A VIWL S QLT + Sbjct: 68 PLRYVAMVIWLYSAFRGVQLTYEH 91
>DSBB_ECO57 (P0A6M3) Disulfide bond formation protein B (Disulfide| oxidoreductase) Length = 176 Score = 31.2 bits (69), Expect = 2.7 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = -1 Query: 249 KGALLWMKSAAVYLSLYLLFCLRCKHMLLRPF------RAACDDIFGAIFFHELSVVPLS 88 +GA L M A+ L L L+ MLL+P R A + GA ++ P + Sbjct: 12 RGAWLLMAFTALALELTALWFQHV--MLLKPCVLCIYERCALFGVLGAALIG--AIAPKT 67 Query: 87 VLKCIAAVIWLISVLMTTQLTMHY 16 L+ +A VIWL S QLT + Sbjct: 68 PLRYVAMVIWLYSAFRGVQLTYEH 91
>VE2_HPV49 (P36795) Regulatory protein E2| Length = 488 Score = 30.8 bits (68), Expect = 3.5 Identities = 22/81 (27%), Positives = 32/81 (39%) Frame = -2 Query: 488 SNSEYPESGTKNTPVPSRKPSYMAPTESLKAKLRGPPRLDSDLPVDKNGFTRRQSLPSAA 309 SN+ TP + + T + A G P L S K + R+ S P+AA Sbjct: 212 SNASPVHDTVDETPTSTTATTTTFSTTTATATATGAPELSSKTGTRKGRYGRKDSSPTAA 271 Query: 308 NNRGIKTEWRR*RGYQTSIRR 246 +N + RR R + RR Sbjct: 272 SNSRKEVSRRRSRSRTRTRRR 292
>KCM1_XENLA (Q91636) Kinesin central motor 1 (XKCM1)| Length = 730 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -2 Query: 470 ESGTKNTPVPSRKPSYMAPTESLKAKLRGPPRLDSDLPVDKNGFTRRQSLPSAANNRG 297 E ++TP+P ++ S A + S K + PRL + + +SLPS NN+G Sbjct: 140 EMEAESTPLPIQQNSVQARSRSTKVSIAEEPRLQTRI-----SEIVEESLPSGRNNQG 192
>JIP4_HUMAN (O60271) C-jun-amino-terminal kinase-interacting protein 4| (JNK-interacting protein 4) (JIP-4) (JNK-associated leucine-zipper protein) (JLP) (Sperm-associated antigen 9) (Mitogen-activated protein kinase 8-interacting protein 4) (Human lung ca Length = 1321 Score = 30.4 bits (67), Expect = 4.6 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 7/90 (7%) Frame = -2 Query: 524 NGSLRTKRRSS----FSNSEYPESGTKNTPVPSRKPSYMAPTESLKAKLRGPPRLDSDLP 357 N +++ K+RSS FS S T P P Y APT + ++ S LP Sbjct: 541 NPAMQEKKRSSIWQFFSRLFSSSSNTTKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLP 600 Query: 356 VDKN---GFTRRQSLPSAANNRGIKTEWRR 276 DK+ F ++ S A+ R K E R Sbjct: 601 GDKSKAFDFLSEETEASLASRREQKREQYR 630
>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) Length = 2588 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Frame = -2 Query: 521 GSLRTKRRSSFSNSEYPESGTK-NTPVPSRKPSYMAPTESLKAKLRGPPRLDSDLPVDKN 345 GS +T + S+ S K ++P+P +P + + L K PP + ++ P+ K Sbjct: 609 GSTKTMEPETAELSQVNLSDLKISSPIPKPQPEFR--NDGLTTKFSAPPGIRNENPLTKG 666 Query: 344 GFTRRQSLP 318 G + LP Sbjct: 667 GLANQTLLP 675
>YMF11_MARPO (P38456) Hypothetical 83.1 kDa protein in COB-ATPA intergenic| region (ORF 732) Length = 732 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -3 Query: 571 LQKGKKRLGPRKNLCLMEALEPREGLRSLIQNTRRVEPRILQFHQGSQAIWL 416 L++G K LGP AL+ + R + + + PR+L+ H+ S+A+W+ Sbjct: 175 LERGSKALGPESPKETSLALQKKRR-RPEMASPHTILPRVLRTHKVSRALWV 225
>YQ56_CAEEL (Q09252) Hypothetical protein C16C10.6| Length = 392 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = -2 Query: 527 PNGSLRTKRRSSFSNS--EYPESGTKNTPVPSRKPSYMAPTESLKAKLRGPPRLDSDLPV 354 P RT S S E ESG++ +P + S AP SLK KL+ P ++D + + Sbjct: 298 PRARRRTSSPSPTSRKSIESRESGSRRSPEGKSEKSEKAPKISLKDKLK-PKKIDKEARL 356 Query: 353 D 351 D Sbjct: 357 D 357
>PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1199 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -2 Query: 533 PLPNGSLRTKRRSSFSNSEYPESGTKNTPVPSRKPSYMAPTESLKAKLRGP 381 PL + + + S+SE PE+ T P P + PS +AP L + L GP Sbjct: 571 PLLESLKKMQESPAPSSSEPPEAATVAAPSPPKTPSLLAP---LVSPLTGP 618
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = -2 Query: 530 LPNGSLRTKRR---SSFSNSEYPESGTKNTPVPSRKPSYMAPTESLKAKLR-GPPRLDSD 363 LPN + +R SSFS + PVPS PSYMA T + K K + +S Sbjct: 789 LPNDNKDILQRLDPSSFSTKH-------SMPVPSMVPSYMAMTTAAKRKRKLTSSTSNSS 841 Query: 362 LPVDKN-GFTRR 330 L D N GF +R Sbjct: 842 LTADVNSGFAKR 853 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,332,475 Number of Sequences: 219361 Number of extensions: 1612676 Number of successful extensions: 4376 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4247 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4376 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
