ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13k07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159J10, full insert sequence Length = 2641 Score = 167 bits (84), Expect = 6e-38 Identities = 237/287 (82%), Gaps = 12/287 (4%) Strand = Plus / Minus Query: 274 caccgtctccattcagttttgattcctctattgtttgcagcagaaggaagagactgacgg 333 |||||||||||||||| | |||| |||| ||||||| || |||||| |||||||| ||| Sbjct: 2337 caccgtctccattcagctctgatcgctctgttgtttgtagaagaaggtagagactggcgg 2278 Query: 334 cgagtgaagccattcttgtccactggcagatcagaatctaatctgggtg------gtcct 387 || |||||||||||| |||| |||| ||||||||| | ||| |||| ||||| Sbjct: 2277 cgtgtgaagccattcatgtctgctggtgaatcagaatccagtcttggtgaattctgtcct 2218 Query: 388 cgcaattttgcctttaacgattctgttggagccatatagcttggcttccttgatggaact 447 ||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| Sbjct: 2217 cgcaactttgcctttgcagattctgttgcagccatatagcttggcttccttcgtggaact 2158 Query: 448 ggagtattcttggttccactctccgggtattctgaat---tagagaacgaagaccttctc 504 || ||||||| || |||| | |||||||| ||||| | | |||||||||||||| ||| Sbjct: 2157 ggcgtattctgggctccattttccgggtaatctgatttggtggagaacgaagacctcctc 2098 Query: 505 ttg---gttctaaggcttccattaggcagaggttcttccttggacct 548 ||| ||| ||||| ||||||||| ||||||||||||||||||||| Sbjct: 2097 ttgctagttttaaggtttccattagacagaggttcttccttggacct 2051
>dbj|AK098920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N06, full insert sequence Length = 2040 Score = 167 bits (84), Expect = 6e-38 Identities = 237/287 (82%), Gaps = 12/287 (4%) Strand = Plus / Minus Query: 274 caccgtctccattcagttttgattcctctattgtttgcagcagaaggaagagactgacgg 333 |||||||||||||||| | |||| |||| ||||||| || |||||| |||||||| ||| Sbjct: 1865 caccgtctccattcagctctgatcgctctgttgtttgtagaagaaggtagagactggcgg 1806 Query: 334 cgagtgaagccattcttgtccactggcagatcagaatctaatctgggtg------gtcct 387 || |||||||||||| |||| |||| ||||||||| | ||| |||| ||||| Sbjct: 1805 cgtgtgaagccattcatgtctgctggtgaatcagaatccagtcttggtgaattctgtcct 1746 Query: 388 cgcaattttgcctttaacgattctgttggagccatatagcttggcttccttgatggaact 447 ||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| Sbjct: 1745 cgcaactttgcctttgcagattctgttgcagccatatagcttggcttccttcgtggaact 1686 Query: 448 ggagtattcttggttccactctccgggtattctgaat---tagagaacgaagaccttctc 504 || ||||||| || |||| | |||||||| ||||| | | |||||||||||||| ||| Sbjct: 1685 ggcgtattctgggctccattttccgggtaatctgatttggtggagaacgaagacctcctc 1626 Query: 505 ttg---gttctaaggcttccattaggcagaggttcttccttggacct 548 ||| ||| ||||| ||||||||| ||||||||||||||||||||| Sbjct: 1625 ttgctagttttaaggtttccattagacagaggttcttccttggacct 1579
>dbj|AK062106.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B02, full insert sequence Length = 2099 Score = 167 bits (84), Expect = 6e-38 Identities = 237/287 (82%), Gaps = 12/287 (4%) Strand = Plus / Minus Query: 274 caccgtctccattcagttttgattcctctattgtttgcagcagaaggaagagactgacgg 333 |||||||||||||||| | |||| |||| ||||||| || |||||| |||||||| ||| Sbjct: 1923 caccgtctccattcagctctgatcgctctgttgtttgtagaagaaggtagagactggcgg 1864 Query: 334 cgagtgaagccattcttgtccactggcagatcagaatctaatctgggtg------gtcct 387 || |||||||||||| |||| |||| ||||||||| | ||| |||| ||||| Sbjct: 1863 cgtgtgaagccattcatgtctgctggtgaatcagaatccagtcttggtgaattctgtcct 1804 Query: 388 cgcaattttgcctttaacgattctgttggagccatatagcttggcttccttgatggaact 447 ||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| Sbjct: 1803 cgcaactttgcctttgcagattctgttgcagccatatagcttggcttccttcgtggaact 1744 Query: 448 ggagtattcttggttccactctccgggtattctgaat---tagagaacgaagaccttctc 504 || ||||||| || |||| | |||||||| ||||| | | |||||||||||||| ||| Sbjct: 1743 ggcgtattctgggctccattttccgggtaatctgatttggtggagaacgaagacctcctc 1684 Query: 505 ttg---gttctaaggcttccattaggcagaggttcttccttggacct 548 ||| ||| ||||| ||||||||| ||||||||||||||||||||| Sbjct: 1683 ttgctagttttaaggtttccattagacagaggttcttccttggacct 1637
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 2e-31 Identities = 211/256 (82%), Gaps = 12/256 (4%) Strand = Plus / Plus Query: 305 tgtttgcagcagaaggaagagactgacggcgagtgaagccattcttgtccactggcagat 364 |||||| || |||||| |||||||| ||||| |||||||||||| |||| |||| || Sbjct: 29795549 tgtttgtagaagaaggtagagactggcggcgtgtgaagccattcatgtctgctggtgaat 29795608 Query: 365 cagaatctaatctgggtg------gtcctcgcaattttgcctttaacgattctgttggag 418 ||||||| | ||| |||| |||||||||| ||||||||| |||||||||| || Sbjct: 29795609 cagaatccagtcttggtgaattctgtcctcgcaactttgcctttgcagattctgttgcag 29795668 Query: 419 ccatatagcttggcttccttgatggaactggagtattcttggttccactctccgggtatt 478 |||||||||||||||||||| ||||||||| ||||||| || |||| | |||||||| | Sbjct: 29795669 ccatatagcttggcttccttcgtggaactggcgtattctgggctccattttccgggtaat 29795728 Query: 479 ctgaat---tagagaacgaagaccttctcttg---gttctaaggcttccattaggcagag 532 |||| | | |||||||||||||| |||||| ||| ||||| ||||||||| ||||| Sbjct: 29795729 ctgatttggtggagaacgaagacctcctcttgctagttttaaggtttccattagacagag 29795788 Query: 533 gttcttccttggacct 548 |||||||||||||||| Sbjct: 29795789 gttcttccttggacct 29795804
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683B11 Length = 155955 Score = 145 bits (73), Expect = 2e-31 Identities = 211/256 (82%), Gaps = 12/256 (4%) Strand = Plus / Plus Query: 305 tgtttgcagcagaaggaagagactgacggcgagtgaagccattcttgtccactggcagat 364 |||||| || |||||| |||||||| ||||| |||||||||||| |||| |||| || Sbjct: 39644 tgtttgtagaagaaggtagagactggcggcgtgtgaagccattcatgtctgctggtgaat 39703 Query: 365 cagaatctaatctgggtg------gtcctcgcaattttgcctttaacgattctgttggag 418 ||||||| | ||| |||| |||||||||| ||||||||| |||||||||| || Sbjct: 39704 cagaatccagtcttggtgaattctgtcctcgcaactttgcctttgcagattctgttgcag 39763 Query: 419 ccatatagcttggcttccttgatggaactggagtattcttggttccactctccgggtatt 478 |||||||||||||||||||| ||||||||| ||||||| || |||| | |||||||| | Sbjct: 39764 ccatatagcttggcttccttcgtggaactggcgtattctgggctccattttccgggtaat 39823 Query: 479 ctgaat---tagagaacgaagaccttctcttg---gttctaaggcttccattaggcagag 532 |||| | | |||||||||||||| |||||| ||| ||||| ||||||||| ||||| Sbjct: 39824 ctgatttggtggagaacgaagacctcctcttgctagttttaaggtttccattagacagag 39883 Query: 533 gttcttccttggacct 548 |||||||||||||||| Sbjct: 39884 gttcttccttggacct 39899
>gb|AY596619.1| Saccharum officinarum clone SCEZLB1008G11, complete sequence Length = 2293 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 508 gttctaaggcttccattaggcagaggttcttccttggacct 548 ||||||||||||||||||| ||| | |||||||||||||| Sbjct: 544 gttctaaggcttccattagacaggtgctcttccttggacct 584 Score = 44.1 bits (22), Expect = 0.56 Identities = 46/54 (85%) Strand = Plus / Plus Query: 386 ctcgcaattttgcctttaacgattctgttggagccatatagcttggcttccttg 439 ||||||||||||||||| || || || | ||||||||||||||||| ||||| Sbjct: 416 ctcgcaattttgcctttgcggactccgtcgcagccatatagcttggctgccttg 469
>gb|AC115928.10| Mus musculus chromosome 18, clone RP24-530D22, complete sequence Length = 182777 Score = 44.1 bits (22), Expect = 0.56 Identities = 28/30 (93%) Strand = Plus / Minus Query: 268 cctcttcaccgtctccattcagttttgatt 297 |||||||||| |||||||||||||||||| Sbjct: 3628 cctcttcacctgctccattcagttttgatt 3599
>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence Length = 139630 Score = 44.1 bits (22), Expect = 0.56 Identities = 28/30 (93%) Strand = Plus / Minus Query: 268 cctcttcaccgtctccattcagttttgatt 297 |||||||||| |||||||||||||||||| Sbjct: 105398 cctcttcacctgctccattcagttttgatt 105369
>gb|AC092656.1| Homo sapiens BAC clone RP11-455G16 from 4, complete sequence Length = 191840 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 78 attttaatacactcagaggaactaca 103 |||| ||||||||||||||||||||| Sbjct: 187452 atttgaatacactcagaggaactaca 187477
>gb|AY108873.1| Zea mays PCO135817 mRNA sequence Length = 832 Score = 44.1 bits (22), Expect = 0.56 Identities = 46/54 (85%) Strand = Plus / Minus Query: 386 ctcgcaattttgcctttaacgattctgttggagccatatagcttggcttccttg 439 |||||||||| |||||| || || |||| ||||||||||||||||| ||||| Sbjct: 276 ctcgcaatttcgcctttgcggactccgttgcagccatatagcttggctgccttg 223 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 508 gttctaaggcttccattaggcagaggttcttccttggacct 548 ||||||||||||||||||| || | |||||||||||||| Sbjct: 148 gttctaaggcttccattagacaagtgctcttccttggacct 108
>emb|AJ586888.1| Escherichia coli Genomic Island II, strain Nissle 1917 Length = 96457 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 caagtacagagacaggtatac 216 ||||||||||||||||||||| Sbjct: 37222 caagtacagagacaggtatac 37242
>emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, complete sequence Length = 72241 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 tgattcctctattgtttgcag 313 ||||||||||||||||||||| Sbjct: 58015 tgattcctctattgtttgcag 57995
>emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on chromosome 2, complete sequence Length = 230161 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 cattcagttttgattcctcta 303 ||||||||||||||||||||| Sbjct: 172938 cattcagttttgattcctcta 172958
>ref|NM_126334.2| Arabidopsis thaliana calmodulin binding AT2G02790 mRNA, complete cds Length = 1911 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1547 gttggagccatatagcttgg 1528
>ref|NM_202676.1| Arabidopsis thaliana calmodulin binding AT3G49260 transcript variant AT3G49260.2 mRNA, complete cds Length = 1781 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1395 gttggagccatatagcttgg 1376
>ref|NM_114785.2| Arabidopsis thaliana calmodulin binding AT3G49260 transcript variant AT3G49260.1 mRNA, complete cds Length = 1695 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1309 gttggagccatatagcttgg 1290
>gb|AY810284.1| Schistosoma japonicum SJCHGC03774 protein mRNA, partial cds Length = 716 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ttcatccacaacaatgcacc 246 |||||||||||||||||||| Sbjct: 544 ttcatccacaacaatgcacc 525
>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence Length = 166883 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 cttggacctagtctcttctt 559 |||||||||||||||||||| Sbjct: 35432 cttggacctagtctcttctt 35451
>gb|AC115743.10| Mus musculus chromosome 5, clone RP23-477P24, complete sequence Length = 189890 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 cttggacctagtctcttctt 559 |||||||||||||||||||| Sbjct: 175948 cttggacctagtctcttctt 175967
>gb|AY484700.1| Arabidopsis thaliana guard cell associated protein (GCA2) mRNA, complete cds Length = 1720 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1278 gttggagccatatagcttgg 1259
>emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in linkage group 15, complete sequence Length = 135398 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 aatgcacccttctgatggaa 258 |||||||||||||||||||| Sbjct: 55659 aatgcacccttctgatggaa 55678
>gb|AC102933.6| Mus musculus chromosome 8, clone RP24-211I18, complete sequence Length = 172489 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aacaagtacagagacaggta 213 |||||||||||||||||||| Sbjct: 83989 aacaagtacagagacaggta 84008
>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence Length = 122694 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gattcctctattgtttgcag 313 |||||||||||||||||||| Sbjct: 111704 gattcctctattgtttgcag 111685
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence Length = 105599 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 ccattcagttttgattcctc 301 |||||||||||||||||||| Sbjct: 63392 ccattcagttttgattcctc 63373
>emb|AL360270.18| Human DNA sequence from clone RP11-96K19 on chromosome 1 Contains a putative novel transcript, a gene for a novel protein (FLJ11269), a processed pseudogene for cyclin T2 (CCNT2) and a CpG island, complete sequence Length = 172805 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 cttggttccactctccgggt 475 |||||||||||||||||||| Sbjct: 166127 cttggttccactctccgggt 166146
>gb|BT000602.1| Arabidopsis thaliana SF16 -like protein (At3g49260/F2K15_120) mRNA, complete cds Length = 1416 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1151 gttggagccatatagcttgg 1132
>emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F2K15 Length = 129757 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 68251 gttggagccatatagcttgg 68232
>gb|AC104150.6| Homo sapiens 3q BAC RP11-523G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160850 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 aaataactgcagctatacatttta 83 |||||| ||||||||||||||||| Sbjct: 10787 aaataaatgcagctatacatttta 10810
>emb|BX950205.10| Zebrafish DNA sequence from clone CH211-226H8 in linkage group 22, complete sequence Length = 198379 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tcaaaacagaaatgagccaa 61 |||||||||||||||||||| Sbjct: 106345 tcaaaacagaaatgagccaa 106326 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tcaaaacagaaatgagccaa 61 |||||||||||||||||||| Sbjct: 102967 tcaaaacagaaatgagccaa 102948
>gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map CIC11A04, complete sequence Length = 81004 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 36924 gttggagccatatagcttgg 36943
>gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181345 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 aaataactgcagctatacatttta 83 |||||| ||||||||||||||||| Sbjct: 164250 aaataaatgcagctatacatttta 164273
>gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, complete sequence Length = 221086 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctaatctgggtggtcctcgc 390 |||||||||||||||||||| Sbjct: 19446 ctaatctgggtggtcctcgc 19465
>gb|AF361635.1| Arabidopsis thaliana AT3g49260/F2K15_120 mRNA, complete cds Length = 1645 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1259 gttggagccatatagcttgg 1240
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 taatatcatatccgttatca 588 |||||||||||||||||||| Sbjct: 1288592 taatatcatatccgttatca 1288573
>gb|AC011930.5|AC011930 Homo sapiens, clone RP11-16B21, complete sequence Length = 164168 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctaatctgggtggtcctcgc 390 |||||||||||||||||||| Sbjct: 82902 ctaatctgggtggtcctcgc 82921
>emb|BX822787.1|CNS0A64Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB64ZA12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1600 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1246 gttggagccatatagcttgg 1227
>emb|BX822237.1|CNS0A618 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB22ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1742 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1402 gttggagccatatagcttgg 1383
>gb|AY087861.1| Arabidopsis thaliana clone 39013 mRNA, complete sequence Length = 1672 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gttggagccatatagcttgg 431 |||||||||||||||||||| Sbjct: 1300 gttggagccatatagcttgg 1281
>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence Length = 167777 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ctctattgtttgcagcagaa 318 |||||||||||||||||||| Sbjct: 54440 ctctattgtttgcagcagaa 54421
>gb|AC013829.13| Homo sapiens chromosome 8, clone RP11-23D17, complete sequence Length = 147584 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 tggcttccttgatggaactg 448 |||||||||||||||||||| Sbjct: 54299 tggcttccttgatggaactg 54318
>emb|BX842239.2| Mouse DNA sequence from clone RP23-454A1 on chromosome X, complete sequence Length = 58222 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aacagaaatgagccaaataa 65 |||||||||||||||||||| Sbjct: 56127 aacagaaatgagccaaataa 56108
>emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chromosome X, complete sequence Length = 195763 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 aacagaaatgagccaaataa 65 |||||||||||||||||||| Sbjct: 50336 aacagaaatgagccaaataa 50355
>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20, complete sequence Length = 217957 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 563 tttctgtaatatcatatccgttat 586 |||||||||| ||||||||||||| Sbjct: 104971 tttctgtaatttcatatccgttat 104994
>emb|BX530025.6| Mouse DNA sequence from clone RP23-14E18 on chromosome X, complete sequence Length = 104719 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 aacagaaatgagccaaataa 65 |||||||||||||||||||| Sbjct: 48888 aacagaaatgagccaaataa 48907 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,300,434 Number of Sequences: 3902068 Number of extensions: 6300434 Number of successful extensions: 127698 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127570 Number of HSP's gapped (non-prelim): 116 length of query: 642 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 619 effective length of database: 17,143,297,704 effective search space: 10611701278776 effective search space used: 10611701278776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
