ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473851.1| Oryza sativa (japonica cultivar-group), predic... 196 5e-47
2emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 196 5e-47
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
4emb|AJ427984.1|OSA427984 Oryza sativa HAK15 gene for putative po... 196 5e-47
5dbj|AK100672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 5e-47
6dbj|AK060729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 5e-47
7gb|AC093875.1| Homo sapiens BAC clone RP11-625B21 from 4, comple... 50 0.008
8gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, comp... 42 1.9
9gb|AC104103.5| Mus musculus BAC clone RP24-378I6 from chromosome... 42 1.9
10gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, comple... 42 1.9
11emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in... 42 1.9
12gb|AC110076.4| Homo sapiens BAC clone RP11-309M5 from 4, complet... 42 1.9
13gb|BT015204.1| Drosophila melanogaster RE66462 full insert cDNA 40 7.4
14ref|NM_001017395.1| Homo sapiens transmembrane and coiled-coil d... 40 7.4
15gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome... 40 7.4
16ref|XM_802162.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.4
17ref|XM_805342.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.4
18gb|AC004122.1| Arabidopsis thaliana chromosome I BAC T27I1 genom... 40 7.4
19emb|Z19108.1|SCORICA Spiroplasma citri dnaA, dnaN, gyrA and gyrB... 40 7.4
20emb|CR749206.1| Homo sapiens mRNA; cDNA DKFZp686M0169 (from clon... 40 7.4
21gb|BC039859.1| Homo sapiens transmembrane and coiled-coil domain... 40 7.4
22ref|NM_168926.1| Drosophila melanogaster CG32441-RA, transcript ... 40 7.4
23ref|NM_168925.1| Drosophila melanogaster CG32441-RB, transcript ... 40 7.4
24gb|AC010701.3| Drosophila melanogaster 3L BAC RP98-26P10 (Roswel... 40 7.4
25gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Canc... 40 7.4
26gb|AC125017.12| Mus musculus chromosome 1, clone RP24-157E23, co... 40 7.4
27gb|BT024347.1| Drosophila melanogaster IP09454 full insert cDNA 40 7.4
28emb|BX649263.6| Zebrafish DNA sequence from clone DKEY-21O22 in ... 40 7.4
29gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75... 40 7.4
30emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on ch... 40 7.4
31gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, comple... 40 7.4
32dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 7.4
33emb|AL449209.2|HS469K11 Homo sapiens chromosome 3 sequence from ... 40 7.4 
>ref|XM_473851.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2604

 Score =  196 bits (99), Expect = 5e-47
 Identities = 177/203 (87%)
 Strand = Plus / Minus

                                                                        
Query: 337  acataagaggtcaggcgcacctgcagcagattcgagtgcgggatgctcatggacacgatc 396
            ||||||||||||| ||||||||||| || ||| | ||| || |||||||| ||||  |||
Sbjct: 2600 acataagaggtcaagcgcacctgcatcacatttgtgtgtggaatgctcatcgacatcatc 2541

                                                                        
Query: 397  gccctgcggcaattgttcctcaggaacgcgaaaaaatagtttatggtcaacttcttgaag 456
            ||||||||||| |||||||||| ||| ||||| || ||||||||| ||| ||||||||||
Sbjct: 2540 gccctgcggcagttgttcctcaagaatgcgaagaagtagtttatgatcagcttcttgaag 2481

                                                                        
Query: 457  aaccacgagtccttcctggctttgactatgggattatcgatgagatagacagctccagat 516
            ||||| || | ||||||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct: 2480 aaccaggaattcttcctggctttgacgatggggttgtcaatgagatagacggctccagat 2421

                                   
Query: 517  tgcttggcctgcttgatgaatgc 539
            |||||||||||| ||||||||||
Sbjct: 2420 tgcttggcctgcctgatgaatgc 2398
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
             complete sequence
          Length = 150551

 Score =  196 bits (99), Expect = 5e-47
 Identities = 177/203 (87%)
 Strand = Plus / Plus

                                                                         
Query: 337   acataagaggtcaggcgcacctgcagcagattcgagtgcgggatgctcatggacacgatc 396
             ||||||||||||| ||||||||||| || ||| | ||| || |||||||| ||||  |||
Sbjct: 84134 acataagaggtcaagcgcacctgcatcacatttgtgtgtggaatgctcatcgacatcatc 84193

                                                                         
Query: 397   gccctgcggcaattgttcctcaggaacgcgaaaaaatagtttatggtcaacttcttgaag 456
             ||||||||||| |||||||||| ||| ||||| || ||||||||| ||| ||||||||||
Sbjct: 84194 gccctgcggcagttgttcctcaagaatgcgaagaagtagtttatgatcagcttcttgaag 84253

                                                                         
Query: 457   aaccacgagtccttcctggctttgactatgggattatcgatgagatagacagctccagat 516
             ||||| || | ||||||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct: 84254 aaccaggaattcttcctggctttgacgatggggttgtcaatgagatagacggctccagat 84313

                                    
Query: 517   tgcttggcctgcttgatgaatgc 539
             |||||||||||| ||||||||||
Sbjct: 84314 tgcttggcctgcctgatgaatgc 84336
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  196 bits (99), Expect = 5e-47
 Identities = 177/203 (87%)
 Strand = Plus / Plus

                                                                            
Query: 337      acataagaggtcaggcgcacctgcagcagattcgagtgcgggatgctcatggacacgatc 396
                ||||||||||||| ||||||||||| || ||| | ||| || |||||||| ||||  |||
Sbjct: 30986761 acataagaggtcaagcgcacctgcatcacatttgtgtgtggaatgctcatcgacatcatc 30986820

                                                                            
Query: 397      gccctgcggcaattgttcctcaggaacgcgaaaaaatagtttatggtcaacttcttgaag 456
                ||||||||||| |||||||||| ||| ||||| || ||||||||| ||| ||||||||||
Sbjct: 30986821 gccctgcggcagttgttcctcaagaatgcgaagaagtagtttatgatcagcttcttgaag 30986880

                                                                            
Query: 457      aaccacgagtccttcctggctttgactatgggattatcgatgagatagacagctccagat 516
                ||||| || | ||||||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct: 30986881 aaccaggaattcttcctggctttgacgatggggttgtcaatgagatagacggctccagat 30986940

                                       
Query: 517      tgcttggcctgcttgatgaatgc 539
                |||||||||||| ||||||||||
Sbjct: 30986941 tgcttggcctgcctgatgaatgc 30986963
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>emb|AJ427984.1|OSA427984 Oryza sativa HAK15 gene for putative potasium transporter, exons 1-9
          Length = 4590

 Score =  196 bits (99), Expect = 5e-47
 Identities = 177/203 (87%)
 Strand = Plus / Minus

                                                                        
Query: 337  acataagaggtcaggcgcacctgcagcagattcgagtgcgggatgctcatggacacgatc 396
            ||||||||||||| ||||||||||| || ||| | ||| || |||||||| ||||  |||
Sbjct: 4099 acataagaggtcaagcgcacctgcatcacatttgtgtgtggaatgctcatcgacatcatc 4040

                                                                        
Query: 397  gccctgcggcaattgttcctcaggaacgcgaaaaaatagtttatggtcaacttcttgaag 456
            ||||||||||| |||||||||| ||| ||||| || ||||||||| ||| ||||||||||
Sbjct: 4039 gccctgcggcagttgttcctcaagaatgcgaagaagtagtttatgatcagcttcttgaag 3980

                                                                        
Query: 457  aaccacgagtccttcctggctttgactatgggattatcgatgagatagacagctccagat 516
            ||||| || | ||||||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct: 3979 aaccaggaattcttcctggctttgacgatggggttgtcaatgagatagacggctccagat 3920

                                   
Query: 517  tgcttggcctgcttgatgaatgc 539
            |||||||||||| ||||||||||
Sbjct: 3919 tgcttggcctgcctgatgaatgc 3897
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>dbj|AK100672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112N09, full
            insert sequence
          Length = 3130

 Score =  196 bits (99), Expect = 5e-47
 Identities = 177/203 (87%)
 Strand = Plus / Minus

                                                                        
Query: 337  acataagaggtcaggcgcacctgcagcagattcgagtgcgggatgctcatggacacgatc 396
            ||||||||||||| ||||||||||| || ||| | ||| || |||||||| ||||  |||
Sbjct: 2779 acataagaggtcaagcgcacctgcatcacatttgtgtgtggaatgctcatcgacatcatc 2720

                                                                        
Query: 397  gccctgcggcaattgttcctcaggaacgcgaaaaaatagtttatggtcaacttcttgaag 456
            ||||||||||| |||||||||| ||| ||||| || ||||||||| ||| ||||||||||
Sbjct: 2719 gccctgcggcagttgttcctcaagaatgcgaagaagtagtttatgatcagcttcttgaag 2660

                                                                        
Query: 457  aaccacgagtccttcctggctttgactatgggattatcgatgagatagacagctccagat 516
            ||||| || | ||||||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct: 2659 aaccaggaattcttcctggctttgacgatggggttgtcaatgagatagacggctccagat 2600

                                   
Query: 517  tgcttggcctgcttgatgaatgc 539
            |||||||||||| ||||||||||
Sbjct: 2599 tgcttggcctgcctgatgaatgc 2577
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>dbj|AK060729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A01, full
            insert sequence
          Length = 2884

 Score =  196 bits (99), Expect = 5e-47
 Identities = 177/203 (87%)
 Strand = Plus / Minus

                                                                        
Query: 337  acataagaggtcaggcgcacctgcagcagattcgagtgcgggatgctcatggacacgatc 396
            ||||||||||||| ||||||||||| || ||| | ||| || |||||||| ||||  |||
Sbjct: 2552 acataagaggtcaagcgcacctgcatcacatttgtgtgtggaatgctcatcgacatcatc 2493

                                                                        
Query: 397  gccctgcggcaattgttcctcaggaacgcgaaaaaatagtttatggtcaacttcttgaag 456
            ||||||||||| |||||||||| ||| ||||| || ||||||||| ||| ||||||||||
Sbjct: 2492 gccctgcggcagttgttcctcaagaatgcgaagaagtagtttatgatcagcttcttgaag 2433

                                                                        
Query: 457  aaccacgagtccttcctggctttgactatgggattatcgatgagatagacagctccagat 516
            ||||| || | ||||||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct: 2432 aaccaggaattcttcctggctttgacgatggggttgtcaatgagatagacggctccagat 2373

                                   
Query: 517  tgcttggcctgcttgatgaatgc 539
            |||||||||||| ||||||||||
Sbjct: 2372 tgcttggcctgcctgatgaatgc 2350
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>gb|AC093875.1| Homo sapiens BAC clone RP11-625B21 from 4, complete sequence
          Length = 180418

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 58     ctgcacaagggaaatatacaggttaaata 86
              |||||||||||||||||||| ||||||||
Sbjct: 121303 ctgcacaagggaaatatacaagttaaata 121275
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>gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, complete sequence
          Length = 157809

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 245   ttcctttatatatggttagtg 265
             |||||||||||||||||||||
Sbjct: 54866 ttcctttatatatggttagtg 54886
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>gb|AC104103.5| Mus musculus BAC clone RP24-378I6 from chromosome 17, complete sequence
          Length = 137278

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   tgcctgcctgctgccacaatg 122
             |||||||||||||||||||||
Sbjct: 24738 tgcctgcctgctgccacaatg 24718
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>gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, complete sequence
          Length = 171457

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   ttcctttatatatggttagtg 265
             |||||||||||||||||||||
Sbjct: 12702 ttcctttatatatggttagtg 12682
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>emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in linkage group 3,
              complete sequence
          Length = 180778

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 10     aaacaacaaaactggccccacaaaa 34
              ||||||||||||||||||| |||||
Sbjct: 180186 aaacaacaaaactggccccccaaaa 180162
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>gb|AC110076.4| Homo sapiens BAC clone RP11-309M5 from 4, complete sequence
          Length = 105211

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 61    cacaagggaaatatacaggttaaat 85
             |||||||||||| ||||||||||||
Sbjct: 91839 cacaagggaaatctacaggttaaat 91815
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>gb|BT015204.1| Drosophila melanogaster RE66462 full insert cDNA
          Length = 901

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 caccttctgaataaagccag 205
           ||||||||||||||||||||
Sbjct: 614 caccttctgaataaagccag 595
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>ref|NM_001017395.1| Homo sapiens transmembrane and coiled-coil domain family 1 (TMCC1),
           transcript variant 1, mRNA
          Length = 6012

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 cctgcagcagattcgagtgc 375
           ||||||||||||||||||||
Sbjct: 656 cctgcagcagattcgagtgc 675
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>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete sequence
          Length = 170885

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tgcctgcctgctgccacaat 121
             ||||||||||||||||||||
Sbjct: 22777 tgcctgcctgctgccacaat 22796
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>ref|XM_802162.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506041.50) partial mRNA
          Length = 849

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 aacttcttgaagaaccacga 464
           ||||||||||||||||||||
Sbjct: 743 aacttcttgaagaaccacga 724
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>ref|XM_805342.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506543.90) partial mRNA
          Length = 849

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 aacttcttgaagaaccacga 464
           ||||||||||||||||||||
Sbjct: 743 aacttcttgaagaaccacga 724
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>gb|AC004122.1| Arabidopsis thaliana chromosome I BAC T27I1 genomic sequence, complete
             sequence
          Length = 67878

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 514   gattgcttggcctgcttgatgaat 537
             |||||||||| |||||||||||||
Sbjct: 47625 gattgcttgggctgcttgatgaat 47602
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>emb|Z19108.1|SCORICA Spiroplasma citri dnaA, dnaN, gyrA and gyrB genes
          Length = 5639

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  tggttttctttcatcaatca 235
            ||||||||||||||||||||
Sbjct: 2783 tggttttctttcatcaatca 2764
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>emb|CR749206.1| Homo sapiens mRNA; cDNA DKFZp686M0169 (from clone DKFZp686M0169)
          Length = 5632

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 cctgcagcagattcgagtgc 375
           ||||||||||||||||||||
Sbjct: 275 cctgcagcagattcgagtgc 294
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>gb|BC039859.1| Homo sapiens transmembrane and coiled-coil domain family 1,
           transcript variant 1, mRNA (cDNA clone MGC:48954
           IMAGE:5527623), complete cds
          Length = 3250

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 cctgcagcagattcgagtgc 375
           ||||||||||||||||||||
Sbjct: 656 cctgcagcagattcgagtgc 675
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>ref|NM_168926.1| Drosophila melanogaster CG32441-RA, transcript variant A (CG32441),
           mRNA
          Length = 704

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 caccttctgaataaagccag 205
           ||||||||||||||||||||
Sbjct: 614 caccttctgaataaagccag 595
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>ref|NM_168925.1| Drosophila melanogaster CG32441-RB, transcript variant B (CG32441),
           mRNA
          Length = 721

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 caccttctgaataaagccag 205
           ||||||||||||||||||||
Sbjct: 631 caccttctgaataaagccag 612
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>gb|AC010701.3| Drosophila melanogaster 3L BAC RP98-26P10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 174920

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   caccttctgaataaagccag 205
             ||||||||||||||||||||
Sbjct: 94887 caccttctgaataaagccag 94906
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>gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184129

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    cctgcagcagattcgagtgc 375
              ||||||||||||||||||||
Sbjct: 143334 cctgcagcagattcgagtgc 143315
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>gb|AC125017.12| Mus musculus chromosome 1, clone RP24-157E23, complete sequence
          Length = 189884

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    aacaaaacaacctgtgctga 315
              ||||||||||||||||||||
Sbjct: 124617 aacaaaacaacctgtgctga 124636
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>gb|BT024347.1| Drosophila melanogaster IP09454 full insert cDNA
          Length = 1307

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 186  caccttctgaataaagccag 205
            ||||||||||||||||||||
Sbjct: 1034 caccttctgaataaagccag 1015
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>emb|BX649263.6| Zebrafish DNA sequence from clone DKEY-21O22 in linkage group 4,
             complete sequence
          Length = 143254

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    taaatacatcattgtgtgat 100
             ||||||||||||||||||||
Sbjct: 45678 taaatacatcattgtgtgat 45697
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>gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75 of 83 of the complete
              sequence
          Length = 314904

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    caccttctgaataaagccag 205
              ||||||||||||||||||||
Sbjct: 309897 caccttctgaataaagccag 309878
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>emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on chromosome 4, complete
             sequence
          Length = 140383

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tgcctgcctgctgccacaat 121
             ||||||||||||||||||||
Sbjct: 97142 tgcctgcctgctgccacaat 97161
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>gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, complete sequence
          Length = 168097

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tgcctgcctgctgccacaat 121
              ||||||||||||||||||||
Sbjct: 160336 tgcctgcctgctgccacaat 160355
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>dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076a,
             complete sequence
          Length = 71794

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    taaatacatcattgtgtgat 100
             ||||||||||||||||||||
Sbjct: 11026 taaatacatcattgtgtgat 11045
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>emb|AL449209.2|HS469K11 Homo sapiens chromosome 3 sequence from BAC 469K11 map 3q21 region
             D3S3607-D3S1587, complete sequence
          Length = 120608

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   cctgcagcagattcgagtgc 375
             ||||||||||||||||||||
Sbjct: 85440 cctgcagcagattcgagtgc 85459


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,224,909
Number of Sequences: 3902068
Number of extensions: 5224909
Number of successful extensions: 102021
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101940
Number of HSP's gapped (non-prelim): 81
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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