ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13j21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475314.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
2ref|NM_190752.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
3dbj|AK119536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
4gb|AF218845.1|AF218845 Porteresia coarctata fructose-1,6-bisphos... 74 5e-10
5dbj|AK070516.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
6dbj|AB007193.1| Oryza sativa mRNA for fructose-1,6-bisphosphatas... 74 5e-10
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
8dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
9gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
11emb|X89006.1|SHRNAF16B Saccharum hybrid cultivar H65-7052 mRNA f... 50 0.007
12gb|AF378183.1|AF378183 Oryza sativa cultivar Milyang23 cytosolic... 44 0.42
13emb|X76946.1|STCYF1 S.tuberosum cy-F1 mRNA for cytosolic fructos... 42 1.7
14gb|BT013377.1| Lycopersicon esculentum clone 135407F, mRNA sequence 40 6.6
15gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Ca... 40 6.6
16gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, comp... 40 6.6 
>ref|XM_475314.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1032

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 408 acaatttcaagggcccgctgtttgccggtgaaanattggcctccggnttgctccatcagg 467
           |||| |||||||||||| |||||||| ||||||  ||| ||||| | ||||||||||| |
Sbjct: 932 acaagttcaagggcccgttgtttgcctgtgaaagcttgtcctccagcttgctccatcaag 873

                                  
Query: 468 aatgacatggggaaaacctcgta 490
           |||||||| ||||| || |||||
Sbjct: 872 aatgacattgggaacacttcgta 850
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>ref|NM_190752.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 414 tcaagggcccgctgtttgccggtgaaanattggcctccggnttgctccatcaggaatgac 473
           ||||| ||||| | |||||| |||||| | |||||||| |  ||||||||||||||||||
Sbjct: 980 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 921

                      
Query: 474 atggggaaaac 484
           |||||||||||
Sbjct: 920 atggggaaaac 910
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>dbj|AK119536.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B07, full
            insert sequence
          Length = 1315

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 414  tcaagggcccgctgtttgccggtgaaanattggcctccggnttgctccatcaggaatgac 473
            ||||| ||||| | |||||| |||||| | |||||||| |  ||||||||||||||||||
Sbjct: 1023 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 964

                       
Query: 474  atggggaaaac 484
            |||||||||||
Sbjct: 963  atggggaaaac 953
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>gb|AF218845.1|AF218845 Porteresia coarctata fructose-1,6-bisphosphatase mRNA, complete cds
          Length = 1035

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 414 tcaagggcccgctgtttgccggtgaaanattggcctccggnttgctccatcaggaatgac 473
           ||||| ||||| | |||||| |||||| | |||||||| |  ||||||||||||||||||
Sbjct: 920 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 861

                      
Query: 474 atggggaaaac 484
           |||||||||||
Sbjct: 860 atggggaaaac 850
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>dbj|AK070516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057C24, full
            insert sequence
          Length = 1376

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 414  tcaagggcccgctgtttgccggtgaaanattggcctccggnttgctccatcaggaatgac 473
            ||||| ||||| | |||||| |||||| | |||||||| |  ||||||||||||||||||
Sbjct: 1031 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 972

                       
Query: 474  atggggaaaac 484
            |||||||||||
Sbjct: 971  atggggaaaac 961
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>dbj|AB007193.1| Oryza sativa mRNA for fructose-1,6-bisphosphatase (cytosolic
            isoform), complete cds
          Length = 1544

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 414  tcaagggcccgctgtttgccggtgaaanattggcctccggnttgctccatcaggaatgac 473
            ||||| ||||| | |||||| |||||| | |||||||| |  ||||||||||||||||||
Sbjct: 1000 tcaagagcccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgac 941

                       
Query: 474  atggggaaaac 484
            |||||||||||
Sbjct: 940  atggggaaaac 930
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 428      tttgccggtgaaanattggcctccggnttgctccatcaggaatgacatggggaaaac 484
                |||||| |||||| | |||||||| |  |||||||||||||||||||||||||||||
Sbjct: 37515196 tttgcctgtgaaagactggcctccagcctgctccatcaggaatgacatggggaaaac 37515140
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>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0505D12
          Length = 146951

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                       
Query: 428    tttgccggtgaaanattggcctccggnttgctccatcaggaatgacatggggaaaac 484
              |||||| |||||| | |||||||| |  |||||||||||||||||||||||||||||
Sbjct: 109733 tttgcctgtgaaagactggcctccagcctgctccatcaggaatgacatggggaaaac 109677
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>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0042J17, complete sequence
          Length = 124139

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 421   cccgctgtttgccggtgaaanattggcctccggnttgctccatcaggaatgacatgggga 480
             |||| |||||||| ||||||  ||| ||||| | ||||||||||| ||||||||| ||||
Sbjct: 67584 cccgttgtttgcctgtgaaagcttgtcctccagcttgctccatcaagaatgacattggga 67643

                       
Query: 481   aaacctcgta 490
             | || |||||
Sbjct: 67644 acacttcgta 67653
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                            
Query: 421      cccgctgtttgccggtgaaanattggcctccggnttgctccatcaggaatgacatgggga 480
                |||| |||||||| ||||||  ||| ||||| | ||||||||||| ||||||||| ||||
Sbjct: 21350262 cccgttgtttgcctgtgaaagcttgtcctccagcttgctccatcaagaatgacattggga 21350321

                          
Query: 481      aaacctcgta 490
                | || |||||
Sbjct: 21350322 acacttcgta 21350331
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>emb|X89006.1|SHRNAF16B Saccharum hybrid cultivar H65-7052 mRNA for cytosolic
           fructose-1,6-bisphosphatase
          Length = 1318

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 456 tgctccatcaggaatgacatggggaaaac 484
           |||||||| ||||||||||||||||||||
Sbjct: 948 tgctccattaggaatgacatggggaaaac 920



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 348  tcctccacatnatcgtagctcccgaggaatatcgg 382
            ||||||||||  |||||||| ||||||||||||||
Sbjct: 1056 tcctccacatcgtcgtagctgccgaggaatatcgg 1022
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>gb|AF378183.1|AF378183 Oryza sativa cultivar Milyang23 cytosolic fructose-1 mRNA, partial
           cds
          Length = 504

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 459 tccatcaggaatgacatggggaaaac 484
           ||||| ||||||||||||||||||||
Sbjct: 500 tccattaggaatgacatggggaaaac 475
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>emb|X76946.1|STCYF1 S.tuberosum cy-F1 mRNA for cytosolic fructose-1,6-biphosphatase
          Length = 1487

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 443  ttggcctccggnttgctccatcaggaatgacatggg 478
            ||||||||| | ||| |||||||| |||||||||||
Sbjct: 1089 ttggcctcctgcttgttccatcagaaatgacatggg 1054
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>gb|BT013377.1| Lycopersicon esculentum clone 135407F, mRNA sequence
          Length = 641

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 345 atctcctccacatnatcgtagctcccgaggaatat 379
           ||||||||||||| |||||| || || ||||||||
Sbjct: 399 atctcctccacatcatcgtaactaccaaggaatat 365
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>gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 179759

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    acagtctttgtttctgaaac 33
             ||||||||||||||||||||
Sbjct: 25841 acagtctttgtttctgaaac 25860
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>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence
          Length = 170999

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tgaacataacttttcctttt 270
             ||||||||||||||||||||
Sbjct: 36201 tgaacataacttttcctttt 36182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,168,427
Number of Sequences: 3902068
Number of extensions: 2168427
Number of successful extensions: 33097
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33050
Number of HSP's gapped (non-prelim): 47
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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