ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X89006.1|SHRNAF16B Saccharum hybrid cultivar H65-7052 mRNA f... 48 0.021
2gb|BT013377.1| Lycopersicon esculentum clone 135407F, mRNA sequence 40 5.1
3gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Ca... 40 5.1
4gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, comp... 40 5.1

>emb|X89006.1|SHRNAF16B Saccharum hybrid cultivar H65-7052 mRNA for cytosolic
            fructose-1,6-bisphosphatase
          Length = 1318

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 350  tcctccacatnatcgtagctcccgaggaatatcgg 384
            ||||||||||  |||||||| ||||||||||||||
Sbjct: 1056 tcctccacatcgtcgtagctgccgaggaatatcgg 1022



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>gb|BT013377.1| Lycopersicon esculentum clone 135407F, mRNA sequence
          Length = 641

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 347 atctcctccacatnatcgtagctcccgaggaatat 381
           ||||||||||||| |||||| || || ||||||||
Sbjct: 399 atctcctccacatcatcgtaactaccaaggaatat 365



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>gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 179759

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    acagtctttgtttctgaaac 35
             ||||||||||||||||||||
Sbjct: 25841 acagtctttgtttctgaaac 25860



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>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence
          Length = 170999

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   tgaacataacttttcctttt 272
             ||||||||||||||||||||
Sbjct: 36201 tgaacataacttttcctttt 36182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,768,783
Number of Sequences: 3902068
Number of extensions: 1768783
Number of successful extensions: 26653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26648
Number of HSP's gapped (non-prelim): 5
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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