>DAX1_HUMAN (P51843) Nuclear receptor 0B1 (Nuclear receptor DAX-1) (DSS-AHC|
           critical region on the X chromosome protein 1)
          Length = 470

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 540 HRDPTAPETPPAGVWSCR*RGTRWHVTPPPSSAEPPGDCTRMLFPLCF 397
           H  P APE  P G W  R   + +   P    A P G  T +L+  CF
Sbjct: 157 HVAPAAPEARPGGAWWDR---SYFAQRPGGKEALPGGRATALLYRCCF 201

>SMAD7_RAT (O88406) Mothers against decapentaplegic homolog 7 (SMAD 7)|
           (Mothers against DPP homolog 7) (Smad7)
          Length = 426

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 191 PQINHQASLSRLACSSTYGMSRHSNVPCPPYARSRV 84
           P + H + + RL C  +YG      V C P+  SR+
Sbjct: 166 PDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRL 201

>SMAD7_MOUSE (O35253) Mothers against decapentaplegic homolog 7 (SMAD 7)|
           (Mothers against DPP homolog 7) (Smad7) (Madh8)
          Length = 426

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 191 PQINHQASLSRLACSSTYGMSRHSNVPCPPYARSRV 84
           P + H + + RL C  +YG      V C P+  SR+
Sbjct: 166 PDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRL 201

>SMAD7_HUMAN (O15105) Mothers against decapentaplegic homolog 7 (SMAD 7)|
           (Mothers against DPP homolog 7) (Smad7) (hSMAD7)
          Length = 426

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 191 PQINHQASLSRLACSSTYGMSRHSNVPCPPYARSRV 84
           P + H + + RL C  +YG      V C P+  SR+
Sbjct: 166 PDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRL 201

>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
 Frame = -2

Query: 549  RPLHRDP-TAPETPPA------GVWSCR*RGTRWH-----VTPPPSSAEPPGDCTRMLFP 406
            RP  ++P T PE PP       G  + R R T        + PPP  AEPP      L P
Sbjct: 1153 RPKAKEPDTGPEPPPPLSVYQNGTATVRRRPTSEQAGPPELPPPPPPAEPPPADLMQLPP 1212

Query: 405  LCFATGRRRRHREP 364
            L    G  R+  +P
Sbjct: 1213 LPLPDGNARKPVKP 1226

>FBX30_RAT (Q5XI67) F-box only protein 30|
          Length = 742

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -3

Query: 332 LMDEEYGRESGA*RCMSQSCDHGVRHCIISLSCDHGVRHCIISLLPPPQINHQA------ 171
           ++ + + R  G   C+S + +   R+C++ L  DH      +S LP   + H A      
Sbjct: 575 IIHDRHLRSFGVQPCVSTALEEPSRNCVLGLRSDH------LSSLPFEVLQHIAGFLDGF 628

Query: 170 SLSRLACSS 144
           SL +LAC S
Sbjct: 629 SLCQLACVS 637

>LEU1_YERPS (Q66EM1) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 520

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 405 GERACGCSHQEVLQMMEVESHAXGYHVNDN 494
           GERA  CS +EV+  ++V     G H N N
Sbjct: 233 GERAGNCSLEEVIMAIKVRHEMLGVHTNIN 262

>LEU1_YERPE (Q8ZIG8) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 520

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 405 GERACGCSHQEVLQMMEVESHAXGYHVNDN 494
           GERA  CS +EV+  ++V     G H N N
Sbjct: 233 GERAGNCSLEEVIMAIKVRHEMLGVHTNIN 262


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,211,831
Number of Sequences: 219361
Number of extensions: 1727613
Number of successful extensions: 4503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4500
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)