ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 pre... 32 2.3
2SYV_GLOVI (Q7NCQ9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 30 8.7

>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor|
          Length = 317

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
 Frame = +1

Query: 151 YKGQVSQSSDF***SLLXXXXXXXXXFPFTSVISHSAASSVERKAARDTDRTGLSSVFHG 330
           Y G +S +S     S++            +S    S++SS     +  + ++  SS    
Sbjct: 123 YSGTISSTSIAP--SMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSS 180

Query: 331 SRQNSNKGR*TTTSDSFHLVCDASSSHARCSRTSLRVPWSDGRFSGTSM-----PCSNPI 495
           S  +S+K   +++S S      +SSS +  S +S +   S  +FS +S      P S+  
Sbjct: 181 SSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSK---SSSKFSSSSFITSTTPASSSS 237

Query: 496 LHLVLVNYRMSRGYDMDTVSTNLSGVSWVV 585
              ++ N + +   D  + S+  S VS VV
Sbjct: 238 SGAIVSNAKTASTDDSSSASSATSSVSSVV 267



to top

>SYV_GLOVI (Q7NCQ9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 897

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 439 LGGKFCCT*HDLMKHRRRDENYRSSWFSGLCWSSVAIHETQRKAL 305
           +G   C T  D++   RR + +++ W  G   +S+A+H    K L
Sbjct: 54  MGHALCFTLPDVVVRYRRMKGFKTLWLPGTDHASIAVHTVLEKQL 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,950,159
Number of Sequences: 219361
Number of extensions: 2105758
Number of successful extensions: 5156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5154
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top