ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13j01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 249 tctaaaacgtcttatattgatgaacagagggagtac 284 ||||||||||| ||||||| |||||||||||||||| Sbjct: 74272 tctaaaacgtcctatattggtgaacagagggagtac 74307 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 253 aaacgtcttatattgatgaacagagggagtac 284 ||||||||| |||| ||||||||||||||||| Sbjct: 74253 aaacgtcttgtattaatgaacagagggagtac 74222
>gb|AY821693.1| Australopyrum velutinum beta amylase gene, partial cds; and Stowaway MITE, complete sequence Length = 1595 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 247 tctctaaaacgtcttatattgatgaacagagggagtac 284 ||||||||| | |||||||| | ||||||||||||||| Sbjct: 1341 tctctaaaaagacttatatttaggaacagagggagtac 1378
>emb|AL662807.8| Mouse DNA sequence from clone RP23-138O19 on chromosome 13 Contains the Hdgfrp1 gene for hepatoma-derived growth factor related protein 1 and a ribosomal protein 27A (Rpl27a) pseudogene, complete sequence Length = 188325 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 564 aatcccagggttgtttttgttt 585 |||||||||||||||||||||| Sbjct: 96044 aatcccagggttgtttttgttt 96023
>gb|AC183492.1| Brassica oleracea Contig G, complete sequence Length = 236640 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 247 tctctaaaacgtcttatattgatgaacagagggagtac 284 ||||||||||| |||||||| | |||||||||||||| Sbjct: 235433 tctctaaaacgacttatattaaaaaacagagggagtac 235396
>gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206191 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 564 aatcccagggttgtttttgttt 585 |||||||||||||||||||||| Sbjct: 114514 aatcccagggttgtttttgttt 114535
>gb|AY398686.1| Synthetic construct expression cassette for expression of Homo sapiens antithrombin (SERPINC1) cDNA controlled by the Capra hicrus beta-casein (CSN2) gene Length = 14747 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 atatcaaattatgtataaaaa 380 ||||||||||||||||||||| Sbjct: 9206 atatcaaattatgtataaaaa 9226
>emb|AL359706.18| Human DNA sequence from clone RP11-245H20 on chromosome 13 Contains the 5' end of the NUFIP1 gene for nuclear fragile X mental retardation protein interacting protein 1, the gene for lipopolysaccharide specific response-7 protein (LSR7) and a CpG island, complete sequence Length = 61576 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 cattaggcagggaggccttca 141 ||||||||||||||||||||| Sbjct: 44575 cattaggcagggaggccttca 44555
>gb|AY785888.1| Hordeum vulgare subsp. vulgare cultivar Optic HvCBF10B (CBF10B) mRNA, complete cds Length = 1041 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 247 tctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| |||||||||| |||||||||||||| Sbjct: 943 tctctaaaaggtcttatattttagaacagagggagta 907
>gb|AY785858.1| Hordeum vulgare subsp. vulgare cultivar Optic HvCBF5 (CBF5) mRNA, complete cds Length = 1285 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 247 tctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| | | |||||| |||||||||||||||| Sbjct: 1230 tctctaaaatggcgtatatttatgaacagagggagta 1194
>gb|AC012625.7| Homo sapiens chromosome 5 clone CTD-2091N23, complete sequence Length = 151225 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 aaacattcctagaaatactta 398 ||||||||||||||||||||| Sbjct: 73860 aaacattcctagaaatactta 73840
>gb|AF409096.1|AF409096 Capra hircus beta-casein precursor (csn2) gene, complete cds Length = 13671 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 atatcaaattatgtataaaaa 380 ||||||||||||||||||||| Sbjct: 13455 atatcaaattatgtataaaaa 13475
>gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, complete sequence Length = 199954 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 ttgtttttgtttcttcaatat 594 ||||||||||||||||||||| Sbjct: 144527 ttgtttttgtttcttcaatat 144547
>emb|BX927095.15| Zebrafish DNA sequence from clone CH211-202E13 in linkage group 17, complete sequence Length = 211277 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 358 atatatcaaattatgtataaaaaca 382 ||||||||||||||| ||||||||| Sbjct: 4966 atatatcaaattatggataaaaaca 4990
>emb|AL929131.5| Zebrafish DNA sequence from clone CH211-286O17, complete sequence Length = 152081 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 gtgaatgcactatatatactc 238 ||||||||||||||||||||| Sbjct: 150812 gtgaatgcactatatatactc 150792
>emb|AJ011018.2|CHI011018 Capra hircus csn2 gene, exons 1 to 9, allele A Length = 10088 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 atatcaaattatgtataaaaa 380 ||||||||||||||||||||| Sbjct: 9907 atatcaaattatgtataaaaa 9927
>emb|AJ011019.2|CHI011019 Capra hircus csn2 gene, exons 1 to 9, allele 0(null) Length = 10087 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 atatcaaattatgtataaaaa 380 ||||||||||||||||||||| Sbjct: 9906 atatcaaattatgtataaaaa 9926
>gb|M90562.1|GOTBCAS07 Goat beta-casein gene, exon 9 and complete cds Length = 494 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 atatcaaattatgtataaaaa 380 ||||||||||||||||||||| Sbjct: 294 atatcaaattatgtataaaaa 314
>gb|AC092173.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0095J15, complete sequence Length = 156023 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 248 ctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| ||||||||| |||||||||||||| Sbjct: 112803 ctctaaaacttcttatattctggaacagagggagta 112838
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 248 ctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| ||||||||| |||||||||||||| Sbjct: 4230 ctctaaaacttcttatattctggaacagagggagta 4265
>gb|AC132441.3| Mus musculus BAC clone RP23-239J2 from chromosome 18, complete sequence Length = 189507 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 150200 tgaaatcccagggttgtttt 150219
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence Length = 378763 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tcagcatcatctcattaggc 128 |||||||||||||||||||| Sbjct: 263058 tcagcatcatctcattaggc 263077
>gb|AC102698.8| Mus musculus chromosome 3, clone RP24-149G20, complete sequence Length = 167457 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 131485 tgaaatcccagggttgtttt 131504
>gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196723 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 151329 tgaaatcccagggttgtttt 151348
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 249 tctaaaacgtcttatattgatgaacagagggagtac 284 ||||||| | |||||||| | ||||||||||||||| Sbjct: 49946 tctaaaaagacttatatttaggaacagagggagtac 49911
>gb|AC105404.4| Mus musculus BAC clone RP24-112M13 from chromosome 16, complete sequence Length = 127531 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 71931 tgaaatcccagggttgtttt 71912
>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence Length = 202089 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 21951 tgaaatcccagggttgtttt 21932
>emb|CR706305.2|CNS0G7XP Tetraodon nigroviridis full-length cDNA Length = 834 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ttttgtttcttcaatatggc 597 |||||||||||||||||||| Sbjct: 182 ttttgtttcttcaatatggc 201
>emb|CR387996.13| Zebrafish DNA sequence from clone DKEY-183N6 in linkage group 3, complete sequence Length = 210145 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 aaacgtcttatattgatgaacaga 276 ||||||||||| |||||||||||| Sbjct: 146307 aaacgtcttattttgatgaacaga 146330
>emb|AL590998.7| Human DNA sequence from clone RP4-677A15 on chromosome 1 Contains parrt of the CACNA1E gene for calcium channel voltage-dependent alpha 1E subunit, complete sequence Length = 102196 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgcactatatatactcctct 242 |||||||||||||||||||| Sbjct: 8252 tgcactatatatactcctct 8271
>emb|AL096855.48|HS1115A15 Human DNA sequence from clone RP5-1115A15 on chromosome 1p36.11-36.31 Contains part of the RERE gene for arginine-glutamic acid dipeptide (RE) repeats (KIAA0458, FLJ38775), a novel gene and a CpG island, complete sequence Length = 178403 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 acacatcaactcaactaaca 164 |||||||||||||||||||| Sbjct: 27844 acacatcaactcaactaaca 27863
>emb|AL021397.1|HS69E11 Human DNA sequence from clone RP1-69E11 on chromosome 1q23-24 Contains a novel gene (MGC3794), a ribosomal protein L34 pseudogene 1, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene and two CpG islands, complete sequence Length = 63916 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 atattgatgaacagagggag 281 |||||||||||||||||||| Sbjct: 14278 atattgatgaacagagggag 14297
>gb|AC163293.4| Mus musculus BAC clone RP23-156J21 from chromosome 16, complete sequence Length = 205834 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 23094 tgaaatcccagggttgtttt 23113
>emb|AL670011.1|NC18F11 Neurospora crassa DNA linkage group V Cosmid contig 18F11 Length = 89222 Score = 40.1 bits (20), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 545 caatatctcgaatntttgaaatc 567 ||||||||||||| ||||||||| Sbjct: 59559 caatatctcgaatatttgaaatc 59537
>emb|AL670010.1|NCB10H4 Neurospora crassa DNA linkage group V BAC contig B10H4 Length = 90763 Score = 40.1 bits (20), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 545 caatatctcgaatntttgaaatc 567 ||||||||||||| ||||||||| Sbjct: 4855 caatatctcgaatatttgaaatc 4833
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 248 ctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| | ||||||| | |||||||||||||| Sbjct: 22425 ctctaaaacttgttatattcaagaacagagggagta 22390
>emb|AL669931.9| Mouse DNA sequence from clone RP23-31D18 on chromosome 11 Contains the Stc2 gene for stanniocalcin 2 and three CpG islands, complete sequence Length = 252980 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 187590 tgaaatcccagggttgtttt 187609
>emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 in linkage group 5, complete sequence Length = 189369 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tatcaaattatgtataaaaa 380 |||||||||||||||||||| Sbjct: 23111 tatcaaattatgtataaaaa 23092
>gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome 8, complete sequence Length = 196609 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 135394 tgaaatcccagggttgtttt 135375
>emb|BX927252.5| Zebrafish DNA sequence from clone CH211-212O10 in linkage group 5, complete sequence Length = 176261 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tatcaaattatgtataaaaa 380 |||||||||||||||||||| Sbjct: 166282 tatcaaattatgtataaaaa 166301
>gb|AC093009.5| Homo sapiens 3 BAC RP11-548O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89214 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 agatgacagtaagtactctg 347 |||||||||||||||||||| Sbjct: 85829 agatgacagtaagtactctg 85848
>gb|AC114945.2| Homo sapiens chromosome 5 clone CTD-2604I2, complete sequence Length = 129575 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atatatcaaattatgtataa 377 |||||||||||||||||||| Sbjct: 97903 atatatcaaattatgtataa 97922
>gb|AC027152.11| Homo sapiens chromosome 17, clone RP11-456D7, complete sequence Length = 132735 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 tataaaaacattcctagaaatact 396 |||||||||||| ||||||||||| Sbjct: 104514 tataaaaacatttctagaaatact 104491
>dbj|AB108373.1| Phleum pratense DNA, SSR, microsatellite C02-D09 Length = 547 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 252 aaaacgtcttatattgatgaacagagggagta 283 ||||||||||| ||| ||||||||||| |||| Sbjct: 475 aaaacgtcttacatttatgaacagaggcagta 506
>gb|AC107216.5| Homo sapiens BAC clone RP11-490A22 from 4, complete sequence Length = 115109 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tgttattttttgatcctcaatttg 539 |||||||||| ||||||||||||| Sbjct: 103736 tgttatttttagatcctcaatttg 103759
>gb|AF486809.1| Bactrocera dorsalis strain white eye transposon hopper, complete sequence Length = 3131 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 tatcaaattatgtataaaaacatt 384 |||| ||||||||||||||||||| Sbjct: 850 tatctaattatgtataaaaacatt 827
>gb|AC093913.2| Homo sapiens BAC clone RP11-768G3 from 4, complete sequence Length = 192059 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccttccagttttctgacagt 441 |||||||||||||||||||| Sbjct: 121711 ccttccagttttctgacagt 121692
>gb|AF306829.1|AF306829 Triticum urartu clone 581 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 aaaacgtcttatattgatgaacagaggg 279 ||||||||||||||| | |||||||||| Sbjct: 739 aaaacgtcttatatttaggaacagaggg 766
>gb|AF306828.1|AF306828 Triticum turgidum subsp. dicoccoides clone 465 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1836 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 aaaacgtcttatattgatgaacagaggg 279 ||||||||||||||| | |||||||||| Sbjct: 739 aaaacgtcttatatttaggaacagaggg 766
>gb|AF306827.1|AF306827 Triticum monococcum subsp. monococcum clone 437 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 aaaacgtcttatattgatgaacagaggg 279 ||||||||||||||| | |||||||||| Sbjct: 739 aaaacgtcttatatttaggaacagaggg 766
>gb|AF306826.1|AF306826 Triticum timopheevii subsp. armeniacum clone 506 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1797 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 252 aaaacgtcttatattgatgaacagagggagta 283 ||||||||||||||| | ||||||||| |||| Sbjct: 725 aaaacgtcttatatttaggaacagaggtagta 694
>gb|AF306825.1|AF306825 Triticum timopheevii subsp. timopheevii clone 513 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1796 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 252 aaaacgtcttatattgatgaacagagggagta 283 ||||||||||||||| | ||||||||| |||| Sbjct: 725 aaaacgtcttatatttaggaacagaggtagta 694
>gb|AF306824.1|AF306824 Triticum timopheevii subsp. armeniacum clone 453 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 aaaacgtcttatattgatgaacagaggg 279 ||||||||||||||| | |||||||||| Sbjct: 739 aaaacgtcttatatttaggaacagaggg 766
>gb|U70428.1|BDU70428 Bactrocera dorsalis transposon hopper, complete sequence Length = 3120 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 tatcaaattatgtataaaaacatt 384 |||| ||||||||||||||||||| Sbjct: 847 tatctaattatgtataaaaacatt 824
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 248 ctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| | ||||||| | |||||||||||||| Sbjct: 31325619 ctctaaaacttgttatattcaagaacagagggagta 31325584
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 248 ctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| ||||||||| |||||||||||||| Sbjct: 5241032 ctctaaaacttcttatattctggaacagagggagta 5241067
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 252 aaaacgtcttatattgatgaacagagggagta 283 ||||||||||||| || |||||||||||||| Sbjct: 21192973 aaaacgtcttataatgtagaacagagggagta 21193004
>gb|AC022093.6| Homo sapiens chromosome 5 clone CTB-169E12, complete sequence Length = 84633 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 atatatcaaattatgtataa 377 |||||||||||||||||||| Sbjct: 76181 atatatcaaattatgtataa 76162
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 252 aaaacgtcttatattgatgaacagagggagta 283 ||||||||||||| || |||||||||||||| Sbjct: 90482 aaaacgtcttataatgtagaacagagggagta 90513
>emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chromosome X, complete sequence Length = 137502 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 112294 tgaaatcccagggttgtttt 112275
>emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chromosome X, complete sequence Length = 163726 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 35199 tgaaatcccagggttgtttt 35180
>emb|BX255927.5| Mouse DNA sequence from clone RP24-87C23 on chromosome 4, complete sequence Length = 56759 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 52339 tgaaatcccagggttgtttt 52358
>gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E subunit (CACNA1E) gene, exons 7-49, and partial cds, alternatively spliced Length = 316704 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgcactatatatactcctct 242 |||||||||||||||||||| Sbjct: 65753 tgcactatatatactcctct 65772
>emb|BX088688.6| Zebrafish DNA sequence from clone CH211-278F21 in linkage group 20, complete sequence Length = 179801 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 ccagggttgtttttgtttct 587 |||||||||||||||||||| Sbjct: 120717 ccagggttgtttttgtttct 120736
>emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a19, COMPLETE SEQUENCE Length = 128818 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 cacttgatatatcaaattat 371 |||||||||||||||||||| Sbjct: 115149 cacttgatatatcaaattat 115130
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 aaattatgtataaaaacatt 384 |||||||||||||||||||| Sbjct: 2414160 aaattatgtataaaaacatt 2414141
>gb|AF017719.1|HSGLRA3S05 Homo sapiens glycine receptor alpha 3 subunit (GLRA3) gene, exon 5 Length = 515 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 tgttattttttgatcctcaatttg 539 |||||||||| ||||||||||||| Sbjct: 494 tgttatttttagatcctcaatttg 471
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 248 ctctaaaacgtcttatattgatgaacagagggagta 283 ||||||||| ||||||||| |||||||||||||| Sbjct: 5241819 ctctaaaacttcttatattctggaacagagggagta 5241854
>emb|AL772138.15| Mouse DNA sequence from clone RP23-213F17 on chromosome 4, complete sequence Length = 229213 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 tgtttttgtttcttcaatat 594 |||||||||||||||||||| Sbjct: 98371 tgtttttgtttcttcaatat 98390
>gb|AC117703.8| Mus musculus chromosome 10, clone RP23-465J13, complete sequence Length = 201237 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 tgaaatcccagggttgtttt 580 |||||||||||||||||||| Sbjct: 200155 tgaaatcccagggttgtttt 200136
>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171960 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 acttgctatgccaatgacat 624 |||||||||||||||||||| Sbjct: 85424 acttgctatgccaatgacat 85443
>emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on chromosome 11, complete sequence Length = 198761 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 agggttgtttttgtttcttc 589 |||||||||||||||||||| Sbjct: 197874 agggttgtttttgtttcttc 197855
>emb|AL935172.8| Mouse DNA sequence from clone RP23-261J24 on chromosome 11, complete sequence Length = 142614 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 agggttgtttttgtttcttc 589 |||||||||||||||||||| Sbjct: 1113 agggttgtttttgtttcttc 1094
>emb|AL691489.20| Mouse DNA sequence from clone RP23-176N9 on chromosome 2, complete sequence Length = 194864 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 tttttgtttcttcaatatgg 596 |||||||||||||||||||| Sbjct: 132085 tttttgtttcttcaatatgg 132104
>gb|AY863213.1| Smittium culisetae mitochondrion, complete genome Length = 58654 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 atatatcaaattatgtataa 377 |||||||||||||||||||| Sbjct: 54732 atatatcaaattatgtataa 54751 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,124,647 Number of Sequences: 3902068 Number of extensions: 6124647 Number of successful extensions: 130314 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 129986 Number of HSP's gapped (non-prelim): 371 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
