ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13i22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483184.1| Oryza sativa (japonica cultivar-group), mRNA 262 1e-66
2ref|XM_483185.1| Oryza sativa (japonica cultivar-group), mRNA 262 1e-66
3dbj|AK065120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
4dbj|AK064832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
5gb|AY772416.1| Oryza sativa (japonica cultivar-group) peroxisoma... 254 3e-64
6gb|AY772415.1| Oryza sativa (japonica cultivar-group) peroxisoma... 254 3e-64
7gb|BT018851.1| Zea mays clone EL01N0555H04.d mRNA sequence 202 9e-49
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
9dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
10gb|AY111328.1| Zea mays CL29436_1 mRNA sequence 78 3e-11
11gb|AF056282.1|AF056282 Nicotiana tabacum clone 165 peroxisomal t... 68 3e-08
12gb|AF056283.1|AF056283 Nicotiana tabacum clone 354 peroxisomal t... 60 8e-06
13gb|AF053104.1|AF053104 Nicotiana tabacum peroxisomal targeting s... 60 8e-06
14gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete s... 54 5e-04
15gb|AF068690.1|AF068690 Citrullus lanatus peroxisomal targeting s... 46 0.12
16gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome... 42 1.9
17gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, com... 42 1.9
18ref|NM_062819.2| Caenorhabditis elegans Fem-3 mRNA Binding Facto... 42 1.9
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20gb|AC092155.3| Homo sapiens BAC clone RP11-312H10 from 2, comple... 42 1.9
21gb|U23176.2| Caenorhabditis elegans cosmid F21H12, complete sequ... 42 1.9
22dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
23dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
24gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 ma... 42 1.9
25gb|AC125079.3| Mus musculus chromosome 16 clone RP23-480M17, com... 40 7.4
26gb|AC147344.2| Pan troglodytes BAC clone CH251-4O16 from Y, comp... 40 7.4
27gb|AC141329.4| Mus musculus BAC clone RP23-63G7 from chromosome ... 40 7.4
28gb|AC122517.2| Mus musculus BAC clone RP24-459G24 from chromosom... 40 7.4
29gb|AC146206.3| Pan troglodytes BAC clone CH251-395K13 from Y, co... 40 7.4
30ref|XM_847882.1| PREDICTED: Canis familiaris similar to Actin-bi... 40 7.4
31ref|XM_673223.1| Plasmodium berghei strain ANKA guanylyl cyclase... 40 7.4
32gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Ho... 40 7.4
33emb|AL732586.6| Human DNA sequence from clone RP11-549H3 on chro... 40 7.4
34gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, comple... 40 7.4
35dbj|BS000553.1| Pan troglodytes chromosome Y clone:PTB-310C12, c... 40 7.4
36gb|AC078784.24| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cance... 40 7.4
37gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.4
38dbj|AK154777.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.4
39gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosom... 40 7.4
40dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
41gb|AY913763.1| Pan troglodytes ZFY (ZFY) gene, complete cds 40 7.4
42gb|AC084321.37| Mus musculus strain C57BL/6J chromosome 7 clone ... 40 7.4
43dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
44gb|AC153862.8| Mus musculus 10 BAC RP23-353K11 (Roswell Park Can... 40 7.4 
>ref|XM_483184.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2693

 Score =  262 bits (132), Expect = 1e-66
 Identities = 219/248 (88%)
 Strand = Plus / Minus

                                                                        
Query: 295  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2328 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2269

                                                                        
Query: 355  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 414
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2268 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2209

                                                                        
Query: 415  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 474
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2208 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 2149

                                                                        
Query: 475  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 534
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 2148 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 2089

                    
Query: 535  ttgggctt 542
            ||||||||
Sbjct: 2088 ttgggctt 2081
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>ref|XM_483185.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2526

 Score =  262 bits (132), Expect = 1e-66
 Identities = 219/248 (88%)
 Strand = Plus / Minus

                                                                        
Query: 295  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2161 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2102

                                                                        
Query: 355  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 414
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2101 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2042

                                                                        
Query: 415  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 474
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2041 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 1982

                                                                        
Query: 475  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 534
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 1981 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 1922

                    
Query: 535  ttgggctt 542
            ||||||||
Sbjct: 1921 ttgggctt 1914
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>dbj|AK065120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O15, full
            insert sequence
          Length = 2693

 Score =  262 bits (132), Expect = 1e-66
 Identities = 219/248 (88%)
 Strand = Plus / Minus

                                                                        
Query: 295  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2328 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2269

                                                                        
Query: 355  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 414
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2268 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2209

                                                                        
Query: 415  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 474
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2208 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 2149

                                                                        
Query: 475  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 534
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 2148 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 2089

                    
Query: 535  ttgggctt 542
            ||||||||
Sbjct: 2088 ttgggctt 2081
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>dbj|AK064832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F17, full
            insert sequence
          Length = 2526

 Score =  262 bits (132), Expect = 1e-66
 Identities = 219/248 (88%)
 Strand = Plus / Minus

                                                                        
Query: 295  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2161 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2102

                                                                        
Query: 355  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 414
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2101 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2042

                                                                        
Query: 415  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 474
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2041 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 1982

                                                                        
Query: 475  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 534
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 1981 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 1922

                    
Query: 535  ttgggctt 542
            ||||||||
Sbjct: 1921 ttgggctt 1914
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>gb|AY772416.1| Oryza sativa (japonica cultivar-group) peroxisomal targeting signal 1
            receptor short form (PEX5) mRNA, complete cds,
            alternatively spliced
          Length = 2527

 Score =  254 bits (128), Expect = 3e-64
 Identities = 218/248 (87%)
 Strand = Plus / Minus

                                                                        
Query: 295  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
            |||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2143 aatgcctaaaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2084

                                                                        
Query: 355  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 414
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2083 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2024

                                                                        
Query: 415  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 474
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2023 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 1964

                                                                        
Query: 475  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 534
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 1963 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 1904

                    
Query: 535  ttgggctt 542
            ||||||||
Sbjct: 1903 ttgggctt 1896
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>gb|AY772415.1| Oryza sativa (japonica cultivar-group) peroxisomal targeting signal 1
            receptor long form (PEX5) mRNA, complete cds,
            alternatively spliced
          Length = 2698

 Score =  254 bits (128), Expect = 3e-64
 Identities = 218/248 (87%)
 Strand = Plus / Minus

                                                                        
Query: 295  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
            |||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2314 aatgcctaaaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2255

                                                                        
Query: 355  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 414
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2254 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2195

                                                                        
Query: 415  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 474
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2194 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 2135

                                                                        
Query: 475  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 534
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 2134 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 2075

                    
Query: 535  ttgggctt 542
            ||||||||
Sbjct: 2074 ttgggctt 2067
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>gb|BT018851.1| Zea mays clone EL01N0555H04.d mRNA sequence
          Length = 2135

 Score =  202 bits (102), Expect = 9e-49
 Identities = 201/234 (85%)
 Strand = Plus / Minus

                                                                        
Query: 311  ggactcagaggggaaactctttctgaaggacgtcaaggttgcgggaatcacatgcagcaa 370
            |||||||||| |||||||||||||||||  |||| ||||||||||  || ||||| ||||
Sbjct: 1805 ggactcagagaggaaactctttctgaagagcgtcgaggttgcgggcgtcgcatgcggcaa 1746

                                                                        
Query: 371  tcatatcactgcgtgaagcattaccaagtgaaattctcaagtactgccaggcattgtctg 430
            |||| |||   | |||||| || ||||| ||||| |||||||||||||| || ||||| |
Sbjct: 1745 tcatgtcagctcttgaagcgttgccaagagaaatcctcaagtactgccaagcgttgtcag 1686

                                                                        
Query: 431  ctttcggattcatggaaaccgcccttacatagtaccgaatggaatcttcgtacagaccct 490
            |||| || ||||| | ||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct: 1685 cttttgggttcattgtaactgcccttacatagtatcgaatggaatcctcatacagaccct 1626

                                                                  
Query: 491  ggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttca 544
            ||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||
Sbjct: 1625 ggttggcatagctgattcccatgttcgcccatgcacgcacgtagttgggtttca 1572
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 1e-23
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                            
Query: 295      aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
                |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 24686878 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 24686819

                                    
Query: 355      gaatcacatgcagcaatcat 374
                |||||||||||||| |||||
Sbjct: 24686818 gaatcacatgcagcgatcat 24686799



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                            
Query: 408      caagtactgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccg 467
                ||||||||||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||
Sbjct: 24686511 caagtactgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcg 24686452

                                 
Query: 468      aatggaatcttcgtaca 484
                ||| || ||||| ||||
Sbjct: 24686451 aatagagtcttcataca 24686435



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 488      cctggttggcatagctaattcccatattagcccatgcacggacgtagttgggctt 542
                ||||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 24685951 cctggttggcatagctaatccccatattagcccatgcacgcacataattgggctt 24685897
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>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_A06
          Length = 92836

 Score =  119 bits (60), Expect = 1e-23
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                         
Query: 295   aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 354
             |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 59182 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 59123

                                 
Query: 355   gaatcacatgcagcaatcat 374
             |||||||||||||| |||||
Sbjct: 59122 gaatcacatgcagcgatcat 59103



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                         
Query: 408   caagtactgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccg 467
             ||||||||||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||
Sbjct: 58815 caagtactgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcg 58756

                              
Query: 468   aatggaatcttcgtaca 484
             ||| || ||||| ||||
Sbjct: 58755 aatagagtcttcataca 58739



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 488   cctggttggcatagctaattcccatattagcccatgcacggacgtagttgggctt 542
             ||||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 58255 cctggttggcatagctaatccccatattagcccatgcacgcacataattgggctt 58201
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>gb|AY111328.1| Zea mays CL29436_1 mRNA sequence
          Length = 700

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                       
Query: 430 gctttcggattcatggaaaccgcccttacatagtaccgaatggaatcttcgtacagaccc 489
           ||||| || ||||| | ||| |||||||||||||| ||||||||||| || ||||  |||
Sbjct: 539 gcttttgggttcattgcaactgcccttacatagtatcgaatggaatcctcatacaacccc 598

                                                                  
Query: 490 tggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttca 544
           |||||||||||| |     ||||||| ||||||||||| ||||||||||| ||||
Sbjct: 599 tggttggcatagattcccaccatattcgcccatgcacgcacgtagttgggtttca 653



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 322 ggaaactctttctgaaggacgtcaaggttgcggg 355
           |||||||||||||||||  |||||||||||||||
Sbjct: 431 ggaaactctttctgaagagcgtcaaggttgcggg 464
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>gb|AF056282.1|AF056282 Nicotiana tabacum clone 165 peroxisomal targeting sequence 1 receptor
            (PEX5) mRNA, partial cds
          Length = 2078

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 469  atggaatcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacgg 528
            |||||||| || |||| ||||||||||||||| || |||||||| || ||||||||||| 
Sbjct: 1505 atggaatcctcatacataccctggttggcataactgattcccatgtttgcccatgcacgt 1446

                          
Query: 529  acgtagttgggctt 542
            || ||||| |||||
Sbjct: 1445 acatagttaggctt 1432
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>gb|AF056283.1|AF056283 Nicotiana tabacum clone 354 peroxisomal targeting sequence 1
           receptor (PEX5) mRNA, partial cds
          Length = 1474

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 469 atggaatcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacgg 528
           |||||||| || |||| |||||||||||| || || |||||||| || ||||||||||| 
Sbjct: 845 atggaatcctcatacataccctggttggcgtaactgattcccatgtttgcccatgcacgt 786

                         
Query: 529 acgtagttgggctt 542
           || ||||| |||||
Sbjct: 785 acatagttaggctt 772
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>gb|AF053104.1|AF053104 Nicotiana tabacum peroxisomal targeting signal 1 receptor (PEX5)
            mRNA, complete cds
          Length = 2823

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 469  atggaatcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacgg 528
            |||||||| || |||| |||||||||||| || || |||||||| || ||||||||||| 
Sbjct: 2213 atggaatcctcatacataccctggttggcgtaactgattcccatgtttgcccatgcacgt 2154

                          
Query: 529  acgtagttgggctt 542
            || ||||| |||||
Sbjct: 2153 acatagttaggctt 2140
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>gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete sequence
          Length = 132878

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 399    tgaaattctcaagtactgccaggcattgtctgctttcggattcatgg 445
              |||||||||||| || ||||| ||||| |||||||| ||||||||||
Sbjct: 125017 tgaaattctcaaatattgccatgcattctctgcttttggattcatgg 125063
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>gb|AF068690.1|AF068690 Citrullus lanatus peroxisomal targeting signal-1 receptor (PEX5)
            mRNA, complete cds
          Length = 2503

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 397  agtgaaattctcaagtactgccaggcattgtctgctttcggattcat 443
            ||||||||||| || || ||||| ||||||||||| || ||||||||
Sbjct: 1921 agtgaaattcttaaatattgccatgcattgtctgcctttggattcat 1875



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 487  ccctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttca 544
            ||||| || ||||| || ||||||||||| ||||| ||||| ||||| || |||||||
Sbjct: 1831 ccctgattagcataactgattcccatattggcccaggcacgtacgtaattaggcttca 1774
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>gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome 16, complete sequence
          Length = 148167

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   caatctgtgtttgtttctcct 215
             |||||||||||||||||||||
Sbjct: 61334 caatctgtgtttgtttctcct 61314
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>gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, complete sequence
          Length = 166581

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 205   ttgtttctccttcccattcca 225
             |||||||||||||||||||||
Sbjct: 75425 ttgtttctccttcccattcca 75405
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>ref|NM_062819.2| Caenorhabditis elegans Fem-3 mRNA Binding Factor family member
            (fbf-2) (fbf-2) mRNA, complete cds
          Length = 2272

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 159  acagtaaacagaaaaacacaataacacaa 187
            |||||||||||||| | ||||||||||||
Sbjct: 2218 acagtaaacagaaagaaacaataacacaa 2190
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 167      cagaaaaacacaataacacaa 187
                |||||||||||||||||||||
Sbjct: 33387687 cagaaaaacacaataacacaa 33387667
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>gb|AC092155.3| Homo sapiens BAC clone RP11-312H10 from 2, complete sequence
          Length = 153304

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   tctgtgtttgtttctccttcc 218
             |||||||||||||||||||||
Sbjct: 42444 tctgtgtttgtttctccttcc 42464
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>gb|U23176.2| Caenorhabditis elegans cosmid F21H12, complete sequence
          Length = 21805

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 159  acagtaaacagaaaaacacaataacacaa 187
            |||||||||||||| | ||||||||||||
Sbjct: 6678 acagtaaacagaaagaaacaataacacaa 6706
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>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1715_H01
          Length = 138733

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 167    cagaaaaacacaataacacaa 187
              |||||||||||||||||||||
Sbjct: 128437 cagaaaaacacaataacacaa 128417
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>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1316_E06
          Length = 110197

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 167   cagaaaaacacaataacacaa 187
             |||||||||||||||||||||
Sbjct: 18306 cagaaaaacacaataacacaa 18286
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>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence
          Length = 117052

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 205    ttgtttctccttcccattcca 225
              |||||||||||||||||||||
Sbjct: 108166 ttgtttctccttcccattcca 108186
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>gb|AC125079.3| Mus musculus chromosome 16 clone RP23-480M17, complete sequence
          Length = 174536

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    tctgccatgggattttacat 89
             ||||||||||||||||||||
Sbjct: 75474 tctgccatgggattttacat 75493
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>gb|AC147344.2| Pan troglodytes BAC clone CH251-4O16 from Y, complete sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    ttgtatacagaattacatat 43
             ||||||||||||||||||||
Sbjct: 22449 ttgtatacagaattacatat 22430
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>gb|AC141329.4| Mus musculus BAC clone RP23-63G7 from chromosome 7, complete sequence
          Length = 153106

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    aaaaacacaataacacaatg 189
              ||||||||||||||||||||
Sbjct: 108018 aaaaacacaataacacaatg 108037
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>gb|AC122517.2| Mus musculus BAC clone RP24-459G24 from chromosome 7, complete sequence
          Length = 186032

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    aaaaacacaataacacaatg 189
              ||||||||||||||||||||
Sbjct: 179777 aaaaacacaataacacaatg 179758
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>gb|AC146206.3| Pan troglodytes BAC clone CH251-395K13 from Y, complete sequence
          Length = 161960

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ttgtatacagaattacatat 43
              ||||||||||||||||||||
Sbjct: 152285 ttgtatacagaattacatat 152304
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>ref|XM_847882.1| PREDICTED: Canis familiaris similar to Actin-binding LIM protein 2
            (Actin-binding LIM protein family member 2) (abLIM2)
            (LOC610389), mRNA
          Length = 3487

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   tgcaaccactgtttctgcca 76
            ||||||||||||||||||||
Sbjct: 2759 tgcaaccactgtttctgcca 2778
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>ref|XM_673223.1| Plasmodium berghei strain ANKA guanylyl cyclase (PB001219.00.0)
            partial mRNA
          Length = 5982

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 163  taaacagaaaaacacaataacaca 186
            |||||| |||||||||||||||||
Sbjct: 4299 taaacaaaaaaacacaataacaca 4322
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>gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237247

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    gaaaaacacaataacacaat 188
              ||||||||||||||||||||
Sbjct: 130645 gaaaaacacaataacacaat 130664
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>emb|AL732586.6| Human DNA sequence from clone RP11-549H3 on chromosome X, complete
             sequence
          Length = 125933

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   aacagaaaaacacaataaca 184
             ||||||||||||||||||||
Sbjct: 12110 aacagaaaaacacaataaca 12091
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>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence
          Length = 169106

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    acagaaaaacacaataacac 185
              ||||||||||||||||||||
Sbjct: 130901 acagaaaaacacaataacac 130920
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>dbj|BS000553.1| Pan troglodytes chromosome Y clone:PTB-310C12, complete sequences
          Length = 120948

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ttgtatacagaattacatat 43
             ||||||||||||||||||||
Sbjct: 72146 ttgtatacagaattacatat 72165
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>gb|AC078784.24| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 165413

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  ttaccaagtgaaattctcaa 410
            ||||||||||||||||||||
Sbjct: 8456 ttaccaagtgaaattctcaa 8437
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 24       ttgtatacagaattacatat 43
                ||||||||||||||||||||
Sbjct: 23522861 ttgtatacagaattacatat 23522842
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>dbj|AK154777.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630106H22
            product:unclassifiable, full insert sequence
          Length = 3351

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  tagcttacagtaaacagaaa 172
            ||||||||||||||||||||
Sbjct: 3319 tagcttacagtaaacagaaa 3300
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>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete sequence
          Length = 180876

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     tctgccatgggattttacat 89
              ||||||||||||||||||||
Sbjct: 167347 tctgccatgggattttacat 167328
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 153      tagcttacagtaaacagaaa 172
                ||||||||||||||||||||
Sbjct: 20522809 tagcttacagtaaacagaaa 20522790
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>gb|AY913763.1| Pan troglodytes ZFY (ZFY) gene, complete cds
          Length = 167166

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ttgtatacagaattacatat 43
              ||||||||||||||||||||
Sbjct: 122602 ttgtatacagaattacatat 122621
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>gb|AC084321.37| Mus musculus strain C57BL/6J chromosome 7 clone rp23-316h18, complete
             sequence
          Length = 176639

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   aaaaacacaataacacaatg 189
             ||||||||||||||||||||
Sbjct: 96183 aaaaacacaataacacaatg 96164
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>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   tagcttacagtaaacagaaa 172
             ||||||||||||||||||||
Sbjct: 40456 tagcttacagtaaacagaaa 40437
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>gb|AC153862.8| Mus musculus 10 BAC RP23-353K11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 223830

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   tagcttacagtaaacagaaa 172
             ||||||||||||||||||||
Sbjct: 93186 tagcttacagtaaacagaaa 93205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,010,092
Number of Sequences: 3902068
Number of extensions: 5010092
Number of successful extensions: 99244
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99097
Number of HSP's gapped (non-prelim): 146
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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