ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13i17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ574850.2|HVU574850 Hordeum vulgare bcat-1 gene for branche... 577 e-161
2emb|AJ622895.1| Triticum durum partial mRNA for DRP3 protein (dr... 464 e-127
3ref|XM_470612.1| Oryza sativa (japonica cultivar-group), predic... 285 8e-74
4dbj|AK120579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 8e-74
5dbj|AK105963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 8e-74
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 165 2e-37
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
8gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome... 165 2e-37
9gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome... 165 2e-37
10ref|XM_467440.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.53
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
12dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
13dbj|AK107391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.53
14gb|AC102532.12| Mus musculus chromosome 12, clone RP23-49D23, co... 42 2.1
15gb|AF547699.1| Lysimachia heterogenea internal transcribed space... 42 2.1
16emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, compl... 42 2.1
17gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, co... 42 2.1
18gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, com... 42 2.1
19gb|AC053479.8| Homo sapiens chromosome 8, clone RP11-782A18, com... 42 2.1
20gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, com... 42 2.1
21gb|AF335476.1| Leishmania tropica ABCA1.2 transporter gene, part... 42 2.1
22gb|AY048850.1| Halobacterium salinarum strain J7 plasmid pHH205,... 42 2.1
23gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete s... 42 2.1
24gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, compl... 42 2.1
25gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the ... 42 2.1
26gb|AC135720.8| Mus musculus chromosome 15, clone RP24-298F20, co... 40 8.3
27ref|XM_480381.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
28ref|XM_466433.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
29gb|AC007864.5| Trypanosoma brucei chromosome 2 clone RPCI93-28H1... 40 8.3
30gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 40 8.3
31gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 8.3
32gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, comple... 40 8.3
33ref|NM_001032492.1| Ciona intestinalis alcohol dehydrogenase cla... 40 8.3
34gb|AC006966.3| Homo sapiens PAC clone RP4-563H24 from 7, complet... 40 8.3
35ref|XM_750819.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.3
36emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 8.3
37gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 8.3
38emb|AL049565.3|HS751D22 Human DNA sequence from clone RP4-751D22... 40 8.3
39emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M1... 40 8.3
40emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.3
41emb|AL606831.17| Mouse DNA sequence from clone RP23-432M23 on ch... 40 8.3
42emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 ... 40 8.3
43gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 8.3
44gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 8.3
45gb|AC003673.3| Arabidopsis thaliana chromosome 2 clone F19F24 ma... 40 8.3
46gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete g... 40 8.3
47gb|AF344173.1| Ciona intestinalis alcohol dehydrogenase class 3 ... 40 8.3
48gb|AF344172.1| Ciona intestinalis alcohol dehydrogenase class 3 ... 40 8.3
49gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.3
50gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, compl... 40 8.3
51gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 8.3
52dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
53gb|AC155252.2| Mus musculus BAC clone RP24-190H19 from chromosom... 40 8.3
54gb|AC009469.4| Homo sapiens BAC clone RP11-20N16 from 2, complet... 40 8.3
55emb|BX321894.8| Zebrafish DNA sequence from clone DKEYP-56B7 in ... 40 8.3
56gb|AC154843.2| Mus musculus BAC clone RP23-58N15 from chromosome... 40 8.3
57dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
58dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
59gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 8.3
60emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.3
61emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in... 40 8.3
62gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Canc... 40 8.3
63gb|AC137950.16| Mus musculus chromosome 15, clone RP24-356L7, co... 40 8.3
64gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 ... 40 8.3
65dbj|AP003327.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.3
66gb|AC120156.9| Mus musculus chromosome 18, clone RP24-263P17, co... 40 8.3
67emb|AJ629123.1| Streptomyces sp. DSM 40477 genomic region of the... 40 8.3 
>emb|AJ574850.2|HVU574850 Hordeum vulgare bcat-1 gene for branched-chain amino acid
            aminotransferase, exons 1-7
          Length = 4318

 Score =  577 bits (291), Expect = e-161
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    gatcgatttctttccgtgcccaaatttgaagccgctgatgaccggggcacgtaactttca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4210 gatcgatttctttccgtgcccaaatttgaagccgctgatgaccggggcacgtaactttca 4151

                                                                        
Query: 61   aattctagcgcgagatatgatcaccatgataattattcacatttgcaaagataatactaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4150 aattctagcgcgagatatgatcaccatgataattattcacatttgcaaagataatactaa 4091

                                                                        
Query: 121  aacaatactggatgcttctggcgctgcatgcgcccatgctcttttcctaatcaatcaatc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4090 aacaatactggatgcttctggcgctgcatgcgcccatgctcttttcctaatcaatcaatc 4031

                                                                        
Query: 181  aatcgctaccgtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4030 aatcgctaccgtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagt 3971

                                                               
Query: 241  cgtgtacaatttcctcgacaacgtgtcttccccagtcctgaactcgtgcct 291
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3970 cgtgtacaatttcctcgacaacgtgtcttccccagtcctgaactcgtgcct 3920



 Score =  426 bits (215), Expect = e-116
 Identities = 215/215 (100%)
 Strand = Plus / Minus

                                                                        
Query: 398  tcgacctggtagccgtcatccctggcgagctcgatgatgctcctgcgcgtgacacccggc 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3612 tcgacctggtagccgtcatccctggcgagctcgatgatgctcctgcgcgtgacacccggc 3553

                                                                        
Query: 458  aggatggtccctgccgtcgtcgccggcgtcgcgacggcgccgcccttgacgacgaagagg 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3552 aggatggtccctgccgtcgtcgccggcgtcgcgacggcgccgcccttgacgacgaagagg 3493

                                                                        
Query: 518  ttgcaggaggaggcctcctcgacgtacctcttgtggaccgcgtccaggtacagcacgtcc 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3492 ttgcaggaggaggcctcctcgacgtacctcttgtggaccgcgtccaggtacagcacgtcc 3433

                                               
Query: 578  gcgaaccccttgcttttcgcgtccatctgcggctt 612
            |||||||||||||||||||||||||||||||||||
Sbjct: 3432 gcgaaccccttgcttttcgcgtccatctgcggctt 3398



 Score =  232 bits (117), Expect = 1e-57
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                        
Query: 289  ccttgtcccttggtaggtgatggtcgacaccggggtgacgccgacggccgttcccgtgca 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 ccttgtcccttggtaggtgatggtcgacaccggggtgacgccgacggccgttcccgtgca 3759

                                                                     
Query: 349  gaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctcttcgacctg 405
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 gaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctcttcgacctg 3702
to top
>emb|AJ622895.1| Triticum durum partial mRNA for DRP3 protein (drg3 gene)
          Length = 469

 Score =  464 bits (234), Expect = e-127
 Identities = 299/320 (93%), Gaps = 3/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 289 ccttgtcccttggtaggtgatggtcgacaccggggtgacgccgacggccgttcccgtgca 348
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 469 ccttgtcccttggtaggtgatggtggacaccggggtgacgccgacggccgttcccgtgca 410

                                                                       
Query: 349 gaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctcttcgacctggta 408
           |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaacacttcgtcggcactgacgagatcgtcgatggagacgaggcgctcttcgacctggta 350

                                                                       
Query: 409 gccgtcatccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggtccc 468
           ||||   || ||||||||||||||||||||||  |||||||| |||||||||||||||| 
Sbjct: 349 gccgctgtctctggcgagctcgatgatgctccgacgcgtgacccccggcaggatggtcc- 291

                                                                       
Query: 469 tgccgtcgtcgccggcgtcgcgacggcgccgcccttgacgacgaagaggttgcaggagga 528
             ||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 290 --cctccgtcgccggcgtcgcgacggcgccgcccttcacgacgaagaggttgcaggagga 233

                                                                       
Query: 529 ggcctcctcgacgtacctcttgtggaccgcgtccaggtacagcacgtccgcgaacccctt 588
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 232 ggcctcctccacgtacctcttgtggaccgagtccaggtacagcacgtccgcgaacccctt 173

                               
Query: 589 gcttttcgcgtccatctgcg 608
           |||  |||||||||||||||
Sbjct: 172 gctcctcgcgtccatctgcg 153
to top
>ref|XM_470612.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1248

 Score =  285 bits (144), Expect = 8e-74
 Identities = 350/418 (83%), Gaps = 3/418 (0%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 250
            |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 1232 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 1173

                                                                        
Query: 251  ttcctcgacaacgtgtcttccccagtcctgaactcgtgccttgtcccttggtaggtgatg 310
             ||  ||| |||||||| |  |||||||||||||||| ||||  ||| ||||| || |  
Sbjct: 1172 gtctgcgataacgtgtcatgtccagtcctgaactcgtacctttgcccatggtaagtaaca 1113

                                                                        
Query: 311  gtcgacaccggggtgacgccgacggccgttcccgtgcagaacacttcgtctgcgccgacg 370
             |||| || ||||  ||| | || || ||||| ||||||||||| |||||||||||||| 
Sbjct: 1112 ctcgatactggggcaacgaccaccgctgttccggtgcagaacacctcgtctgcgccgacc 1053

                                                                        
Query: 371  agatcgtcgatggagacgaggcgctcttcgacctggtagccgtcatccctggcgagctcg 430
            |||||||||||||||||||| || ||||| ||||| ||||||   |||||||||||||||
Sbjct: 1052 agatcgtcgatggagacgagccgttcttcaacctgatagccgcggtccctggcgagctcg 993

                                                                        
Query: 431  atgatgctcctgcgcgtgacacccggcaggatggtccctgccgtcgtcgccggcgtcgcg 490
            |||| |||| |||||||||  ||||||||||||||   | ||   || |||||||| |||
Sbjct: 992  atgacgctcttgcgcgtgatccccggcaggatggt---tcccacggtggccggcgtggcg 936

                                                                        
Query: 491  acggcgccgcccttgacgacgaagaggttgcaggaggaggcctcctcgacgtacctcttg 550
            ||| ||||| ||||||||| ||||||||||||||||||||||||||| | |||| |||||
Sbjct: 935  acgacgccgtccttgacgatgaagaggttgcaggaggaggcctcctccaggtacgtcttg 876

                                                                      
Query: 551  tggaccgcgtccaggtacagcacgtccgcgaaccccttgcttttcgcgtccatctgcg 608
            || |||||||| |||||||||||||| | ||||||  |||| || |||||||||||||
Sbjct: 875  tgcaccgcgtcgaggtacagcacgtcagtgaaccctctgctcttggcgtccatctgcg 818
to top
>dbj|AK120579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135J09, full
            insert sequence
          Length = 1738

 Score =  285 bits (144), Expect = 8e-74
 Identities = 350/418 (83%), Gaps = 3/418 (0%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 250
            |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 1352 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 1293

                                                                        
Query: 251  ttcctcgacaacgtgtcttccccagtcctgaactcgtgccttgtcccttggtaggtgatg 310
             ||  ||| |||||||| |  |||||||||||||||| ||||  ||| ||||| || |  
Sbjct: 1292 gtctgcgataacgtgtcatgtccagtcctgaactcgtacctttgcccatggtaagtaaca 1233

                                                                        
Query: 311  gtcgacaccggggtgacgccgacggccgttcccgtgcagaacacttcgtctgcgccgacg 370
             |||| || ||||  ||| | || || ||||| ||||||||||| |||||||||||||| 
Sbjct: 1232 ctcgatactggggcaacgaccaccgctgttccggtgcagaacacctcgtctgcgccgacc 1173

                                                                        
Query: 371  agatcgtcgatggagacgaggcgctcttcgacctggtagccgtcatccctggcgagctcg 430
            |||||||||||||||||||| || ||||| ||||| ||||||   |||||||||||||||
Sbjct: 1172 agatcgtcgatggagacgagccgttcttcaacctgatagccgcggtccctggcgagctcg 1113

                                                                        
Query: 431  atgatgctcctgcgcgtgacacccggcaggatggtccctgccgtcgtcgccggcgtcgcg 490
            |||| |||| |||||||||  ||||||||||||||   | ||   || |||||||| |||
Sbjct: 1112 atgacgctcttgcgcgtgatccccggcaggatggt---tcccacggtggccggcgtggcg 1056

                                                                        
Query: 491  acggcgccgcccttgacgacgaagaggttgcaggaggaggcctcctcgacgtacctcttg 550
            ||| ||||| ||||||||| ||||||||||||||||||||||||||| | |||| |||||
Sbjct: 1055 acgacgccgtccttgacgatgaagaggttgcaggaggaggcctcctccaggtacgtcttg 996

                                                                      
Query: 551  tggaccgcgtccaggtacagcacgtccgcgaaccccttgcttttcgcgtccatctgcg 608
            || |||||||| |||||||||||||| | ||||||  |||| || |||||||||||||
Sbjct: 995  tgcaccgcgtcgaggtacagcacgtcagtgaaccctctgctcttggcgtccatctgcg 938
to top
>dbj|AK105963.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E04, full
            insert sequence
          Length = 1577

 Score =  285 bits (144), Expect = 8e-74
 Identities = 350/418 (83%), Gaps = 3/418 (0%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 250
            |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 1347 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 1288

                                                                        
Query: 251  ttcctcgacaacgtgtcttccccagtcctgaactcgtgccttgtcccttggtaggtgatg 310
             ||  ||| |||||||| |  |||||||||||||||| ||||  ||| ||||| || |  
Sbjct: 1287 gtctgcgataacgtgtcatgtccagtcctgaactcgtacctttgcccatggtaagtaaca 1228

                                                                        
Query: 311  gtcgacaccggggtgacgccgacggccgttcccgtgcagaacacttcgtctgcgccgacg 370
             |||| || ||||  ||| | || || ||||| ||||||||||| |||||||||||||| 
Sbjct: 1227 ctcgatactggggcaacgaccaccgctgttccggtgcagaacacctcgtctgcgccgacc 1168

                                                                        
Query: 371  agatcgtcgatggagacgaggcgctcttcgacctggtagccgtcatccctggcgagctcg 430
            |||||||||||||||||||| || ||||| ||||| ||||||   |||||||||||||||
Sbjct: 1167 agatcgtcgatggagacgagccgttcttcaacctgatagccgcggtccctggcgagctcg 1108

                                                                        
Query: 431  atgatgctcctgcgcgtgacacccggcaggatggtccctgccgtcgtcgccggcgtcgcg 490
            |||| |||| |||||||||  ||||||||||||||   | ||   || |||||||| |||
Sbjct: 1107 atgacgctcttgcgcgtgatccccggcaggatggt---tcccacggtggccggcgtggcg 1051

                                                                        
Query: 491  acggcgccgcccttgacgacgaagaggttgcaggaggaggcctcctcgacgtacctcttg 550
            ||| ||||| ||||||||| ||||||||||||||||||||||||||| | |||| |||||
Sbjct: 1050 acgacgccgtccttgacgatgaagaggttgcaggaggaggcctcctccaggtacgtcttg 991

                                                                      
Query: 551  tggaccgcgtccaggtacagcacgtccgcgaaccccttgcttttcgcgtccatctgcg 608
            || |||||||| |||||||||||||| | ||||||  |||| || |||||||||||||
Sbjct: 990  tgcaccgcgtcgaggtacagcacgtcagtgaaccctctgctcttggcgtccatctgcg 933
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 2e-37
 Identities = 166/193 (86%), Gaps = 3/193 (1%)
 Strand = Plus / Minus

                                                                           
Query: 416     tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggtccctgccgtc 475
               ||||||||||||||||||| |||| |||||||||  |||||||||||||| ||  | || 
Sbjct: 6919685 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggttcccacggtg 6919626

                                                                           
Query: 476     gtcgccggcgtcgcgacggcgccgcccttgacgacgaagaggttgcaggaggaggcctcc 535
               |   ||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 6919625 g---ccggcgtggcgacgacgccgtccttgacgatgaagaggttgcaggaggaggcctcc 6919569

                                                                           
Query: 536     tcgacgtacctcttgtggaccgcgtccaggtacagcacgtccgcgaaccccttgcttttc 595
               || | |||| ||||||| |||||||| |||||||||||||| | ||||||  |||| || 
Sbjct: 6919568 tccaggtacgtcttgtgcaccgcgtcgaggtacagcacgtcagtgaaccctctgctcttg 6919509

                            
Query: 596     gcgtccatctgcg 608
               |||||||||||||
Sbjct: 6919508 gcgtccatctgcg 6919496



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                           
Query: 338     gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 397
               ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 6919915 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 6919856

                       
Query: 398     tcgacctg 405
               || |||||
Sbjct: 6919855 tcaacctg 6919848



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                           
Query: 191     gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 250
               |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 6920162 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 6920103

                                                    
Query: 251     ttcctcgacaacgtgtcttccccagtcctgaactcgt 287
                ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 6920102 gtctgcgataacgtgtcatgtccagtcctgaactcgt 6920066
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 2e-37
 Identities = 166/193 (86%), Gaps = 3/193 (1%)
 Strand = Plus / Minus

                                                                           
Query: 416     tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggtccctgccgtc 475
               ||||||||||||||||||| |||| |||||||||  |||||||||||||| ||  | || 
Sbjct: 6917580 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggttcccacggtg 6917521

                                                                           
Query: 476     gtcgccggcgtcgcgacggcgccgcccttgacgacgaagaggttgcaggaggaggcctcc 535
               |   ||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 6917520 g---ccggcgtggcgacgacgccgtccttgacgatgaagaggttgcaggaggaggcctcc 6917464

                                                                           
Query: 536     tcgacgtacctcttgtggaccgcgtccaggtacagcacgtccgcgaaccccttgcttttc 595
               || | |||| ||||||| |||||||| |||||||||||||| | ||||||  |||| || 
Sbjct: 6917463 tccaggtacgtcttgtgcaccgcgtcgaggtacagcacgtcagtgaaccctctgctcttg 6917404

                            
Query: 596     gcgtccatctgcg 608
               |||||||||||||
Sbjct: 6917403 gcgtccatctgcg 6917391



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                           
Query: 338     gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 397
               ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 6917810 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 6917751

                       
Query: 398     tcgacctg 405
               || |||||
Sbjct: 6917750 tcaacctg 6917743



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                           
Query: 191     gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 250
               |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 6918057 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 6917998

                                                    
Query: 251     ttcctcgacaacgtgtcttccccagtcctgaactcgt 287
                ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 6917997 gtctgcgataacgtgtcatgtccagtcctgaactcgt 6917961
to top
>gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1781E12,
              complete sequence
          Length = 120392

 Score =  165 bits (83), Expect = 2e-37
 Identities = 166/193 (86%), Gaps = 3/193 (1%)
 Strand = Plus / Minus

                                                                          
Query: 416    tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggtccctgccgtc 475
              ||||||||||||||||||| |||| |||||||||  |||||||||||||| ||  | || 
Sbjct: 115618 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggttcccacggtg 115559

                                                                          
Query: 476    gtcgccggcgtcgcgacggcgccgcccttgacgacgaagaggttgcaggaggaggcctcc 535
              |   ||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 115558 g---ccggcgtggcgacgacgccgtccttgacgatgaagaggttgcaggaggaggcctcc 115502

                                                                          
Query: 536    tcgacgtacctcttgtggaccgcgtccaggtacagcacgtccgcgaaccccttgcttttc 595
              || | |||| ||||||| |||||||| |||||||||||||| | ||||||  |||| || 
Sbjct: 115501 tccaggtacgtcttgtgcaccgcgtcgaggtacagcacgtcagtgaaccctctgctcttg 115442

                           
Query: 596    gcgtccatctgcg 608
              |||||||||||||
Sbjct: 115441 gcgtccatctgcg 115429



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                          
Query: 338    gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 397
              ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 115848 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 115789

                      
Query: 398    tcgacctg 405
              || |||||
Sbjct: 115788 tcaacctg 115781



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                          
Query: 191    gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 250
              |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 116095 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 116036

                                                   
Query: 251    ttcctcgacaacgtgtcttccccagtcctgaactcgt 287
               ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 116035 gtctgcgataacgtgtcatgtccagtcctgaactcgt 115999
to top
>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11,
             complete sequence
          Length = 166072

 Score =  165 bits (83), Expect = 2e-37
 Identities = 166/193 (86%), Gaps = 3/193 (1%)
 Strand = Plus / Minus

                                                                         
Query: 416   tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggtccctgccgtc 475
             ||||||||||||||||||| |||| |||||||||  |||||||||||||| ||  | || 
Sbjct: 86282 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggttcccacggtg 86223

                                                                         
Query: 476   gtcgccggcgtcgcgacggcgccgcccttgacgacgaagaggttgcaggaggaggcctcc 535
             |   ||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 86222 g---ccggcgtggcgacgacgccgtccttgacgatgaagaggttgcaggaggaggcctcc 86166

                                                                         
Query: 536   tcgacgtacctcttgtggaccgcgtccaggtacagcacgtccgcgaaccccttgcttttc 595
             || | |||| ||||||| |||||||| |||||||||||||| | ||||||  |||| || 
Sbjct: 86165 tccaggtacgtcttgtgcaccgcgtcgaggtacagcacgtcagtgaaccctctgctcttg 86106

                          
Query: 596   gcgtccatctgcg 608
             |||||||||||||
Sbjct: 86105 gcgtccatctgcg 86093



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                         
Query: 338   gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 397
             ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 86512 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 86453

                     
Query: 398   tcgacctg 405
             || |||||
Sbjct: 86452 tcaacctg 86445



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                         
Query: 191   gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 250
             |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 86759 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 86700

                                                  
Query: 251   ttcctcgacaacgtgtcttccccagtcctgaactcgt 287
              ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 86699 gtctgcgataacgtgtcatgtccagtcctgaactcgt 86663
to top
>ref|XM_467440.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2475

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 472  cgtcgtcgccggcgtcgcgacggcgc 497
            ||||||||||||||||||| ||||||
Sbjct: 1501 cgtcgtcgccggcgtcgcgtcggcgc 1526
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 472      cgtcgtcgccggcgtcgcgacggcgc 497
                ||||||||||||||||||| ||||||
Sbjct: 29535194 cgtcgtcgccggcgtcgcgtcggcgc 29535169



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 478      cgccggcgtcgcgacggcgccgcc 501
                ||||| ||||||||||||||||||
Sbjct: 22628205 cgccgtcgtcgcgacggcgccgcc 22628228
to top
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1038_A06
          Length = 147836

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 472    cgtcgtcgccggcgtcgcgacggcgc 497
              ||||||||||||||||||| ||||||
Sbjct: 130224 cgtcgtcgccggcgtcgcgtcggcgc 130199
to top
>dbj|AK107391.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C12, full
            insert sequence
          Length = 2475

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 472  cgtcgtcgccggcgtcgcgacggcgc 497
            ||||||||||||||||||| ||||||
Sbjct: 1501 cgtcgtcgccggcgtcgcgtcggcgc 1526
to top
>gb|AC102532.12| Mus musculus chromosome 12, clone RP23-49D23, complete sequence
          Length = 170606

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 290    cttgtcccttggtaggtgatg 310
              |||||||||||||||||||||
Sbjct: 145103 cttgtcccttggtaggtgatg 145083
to top
>gb|AF547699.1| Lysimachia heterogenea internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 374 tcgtcgatggagacgaggcgc 394
           |||||||||||||||||||||
Sbjct: 577 tcgtcgatggagacgaggcgc 557
to top
>emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, complete sequence
          Length = 191674

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 164    ttcctaatcaatcaatcaatc 184
              |||||||||||||||||||||
Sbjct: 139485 ttcctaatcaatcaatcaatc 139465
to top
>gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, complete sequence
          Length = 222905

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 290    cttgtcccttggtaggtgatg 310
              |||||||||||||||||||||
Sbjct: 218890 cttgtcccttggtaggtgatg 218910
to top
>gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, complete sequence
          Length = 189532

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    ttcacatttgcaaagataata 116
             |||||||||||||||||||||
Sbjct: 19225 ttcacatttgcaaagataata 19245
to top
>gb|AC053479.8| Homo sapiens chromosome 8, clone RP11-782A18, complete sequence
          Length = 133053

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 292    tgtcccttggtaggtgatggt 312
              |||||||||||||||||||||
Sbjct: 105733 tgtcccttggtaggtgatggt 105753
to top
>gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, complete sequence
          Length = 186881

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  tgtcccttggtaggtgatggt 312
            |||||||||||||||||||||
Sbjct: 8331 tgtcccttggtaggtgatggt 8351
to top
>gb|AF335476.1| Leishmania tropica ABCA1.2 transporter gene, partial cds
          Length = 5688

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 552  ggaccgcgtccaggtacagca 572
            |||||||||||||||||||||
Sbjct: 2026 ggaccgcgtccaggtacagca 2006
to top
>gb|AY048850.1| Halobacterium salinarum strain J7 plasmid pHH205, complete sequence
          Length = 16341

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 472  cgtcgtcgccggcgtcgcgac 492
            |||||||||||||||||||||
Sbjct: 1903 cgtcgtcgccggcgtcgcgac 1923
to top
>gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete sequence
          Length = 186752

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    ttcacatttgcaaagataata 116
             |||||||||||||||||||||
Sbjct: 80468 ttcacatttgcaaagataata 80448
to top
>gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, complete sequence
          Length = 169622

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   ttcacatttgcaaagataata 116
            |||||||||||||||||||||
Sbjct: 3228 ttcacatttgcaaagataata 3208
to top
>gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the complete genome
          Length = 12549

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 470  gccgtcgtcgccggcgtcgcg 490
            |||||||||||||||||||||
Sbjct: 3621 gccgtcgtcgccggcgtcgcg 3641
to top
>gb|AC135720.8| Mus musculus chromosome 15, clone RP24-298F20, complete sequence
          Length = 156107

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 512    aagaggttgcaggaggaggc 531
              ||||||||||||||||||||
Sbjct: 105671 aagaggttgcaggaggaggc 105652
to top
>ref|XM_480381.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 ctgccgtcgtcgccggcgtc 487
           ||||||||||||||||||||
Sbjct: 139 ctgccgtcgtcgccggcgtc 120
to top
>ref|XM_466433.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2010

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 478  cgccggcgtcgcgacggcgccgcc 501
            ||||| ||||||||||||||||||
Sbjct: 1503 cgccgtcgtcgcgacggcgccgcc 1526
to top
>gb|AC007864.5| Trypanosoma brucei chromosome 2 clone RPCI93-28H13, complete sequence
          Length = 160498

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   aatcaatcaatcaatcgcta 188
             ||||||||||||||||||||
Sbjct: 28809 aatcaatcaatcaatcgcta 28828
to top
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    aatcaatcaatcaatcgcta 188
              ||||||||||||||||||||
Sbjct: 645138 aatcaatcaatcaatcgcta 645157
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 483     gcgtcgcgacggcgccgccc 502
               ||||||||||||||||||||
Sbjct: 1754345 gcgtcgcgacggcgccgccc 1754326
to top
>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence
          Length = 200529

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   tcttttcctaatcaatcaatcaat 183
             |||||||||||||||| |||||||
Sbjct: 33695 tcttttcctaatcaatgaatcaat 33718
to top
>ref|NM_001032492.1| Ciona intestinalis alcohol dehydrogenase class 3 (Adh3), mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 tttcttgtcctctgccagcc 218
           ||||||||||||||||||||
Sbjct: 992 tttcttgtcctctgccagcc 973
to top
>gb|AC006966.3| Homo sapiens PAC clone RP4-563H24 from 7, complete sequence
          Length = 101215

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   tcttttcctaatcaatcaatcaat 183
             |||||||||||||||| |||||||
Sbjct: 29235 tcttttcctaatcaatgaatcaat 29212
to top
>ref|XM_750819.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g15770)
           partial mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 507 cgacgaagaggttgcaggag 526
           ||||||||||||||||||||
Sbjct: 570 cgacgaagaggttgcaggag 589
to top
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    ccctgccgtcgtcgccggcg 485
              ||||||||||||||||||||
Sbjct: 114928 ccctgccgtcgtcgccggcg 114947
to top
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     ttcctaatcaatcaatcaat 183
               ||||||||||||||||||||
Sbjct: 1678262 ttcctaatcaatcaatcaat 1678281
to top
>emb|AL049565.3|HS751D22 Human DNA sequence from clone RP4-751D22 on chromosome Xq25-26.3,
             complete sequence
          Length = 85538

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ctcttttcctaatcaatcaa 178
             ||||||||||||||||||||
Sbjct: 54297 ctcttttcctaatcaatcaa 54316
to top
>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12
             Contains the PPIAL gene for peptidylprolyl isomerase A
             (cyclophilin A)-like pseudogene, the 5' end of the PTPRT
             gene for protein tyrosine phosphatase receptor type T, a
             novel gene and two CpG Islands, complete sequence
          Length = 177562

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    ccatgataattattcacatttgca 107
             |||||||||| |||||||||||||
Sbjct: 54868 ccatgataataattcacatttgca 54891
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 483     gcgtcgcgacggcgccgccc 502
               ||||||||||||||||||||
Sbjct: 3089238 gcgtcgcgacggcgccgccc 3089219
to top
>emb|AL606831.17| Mouse DNA sequence from clone RP23-432M23 on chromosome 11 Contains the
              5' end of Ntn1 gene for netrin 1, three genes for a novel
              proteins (F730038I15Rik), the 3' end of a novel gene
              (4930535C22Rik) and two CpG islands, complete sequence
          Length = 221455

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    tcctaatcaatcaatcaatc 184
              ||||||||||||||||||||
Sbjct: 212251 tcctaatcaatcaatcaatc 212270
to top
>emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 in linkage group 5,
             complete sequence
          Length = 189369

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   atactaaaacaatactggat 133
             ||||||||||||||||||||
Sbjct: 68759 atactaaaacaatactggat 68740
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 468     ctgccgtcgtcgccggcgtcgcgacggc 495
               ||||||||||||||| ||| ||||||||
Sbjct: 3536417 ctgccgtcgtcgccgacgttgcgacggc 3536390
to top
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 489    cgacggcgccgcccttgacg 508
              ||||||||||||||||||||
Sbjct: 600857 cgacggcgccgcccttgacg 600876
to top
>gb|AC003673.3| Arabidopsis thaliana chromosome 2 clone F19F24 map CIC06E08, complete
             sequence
          Length = 99359

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tttcctaatcaatcaatcaa 182
             ||||||||||||||||||||
Sbjct: 45507 tttcctaatcaatcaatcaa 45526
to top
>gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete genome
          Length = 135611

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 239   gtcgtgtacaatttcctcgacaac 262
             ||||||||||||||| ||||||||
Sbjct: 78558 gtcgtgtacaatttcgtcgacaac 78581
to top
>gb|AF344173.1| Ciona intestinalis alcohol dehydrogenase class 3 (Adh3) gene,
            complete cds
          Length = 3890

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  tttcttgtcctctgccagcc 218
            ||||||||||||||||||||
Sbjct: 2428 tttcttgtcctctgccagcc 2409
to top
>gb|AF344172.1| Ciona intestinalis alcohol dehydrogenase class 3 (Adh3) mRNA,
           complete cds
          Length = 1407

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 tttcttgtcctctgccagcc 218
           ||||||||||||||||||||
Sbjct: 992 tttcttgtcctctgccagcc 973
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 468     ctgccgtcgtcgccggcgtc 487
               ||||||||||||||||||||
Sbjct: 1948825 ctgccgtcgtcgccggcgtc 1948844



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 474     tcgtcgccggcgtcgcgacggcgccgcc 501
               ||||||||| || |||||||||||||||
Sbjct: 1456713 tcgtcgccgccggcgcgacggcgccgcc 1456686
to top
>gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, complete sequence
          Length = 238472

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  ctaaaacaatactggatgct 136
            ||||||||||||||||||||
Sbjct: 6707 ctaaaacaatactggatgct 6726
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 483     gcgtcgcgacggcgccgccc 502
               ||||||||||||||||||||
Sbjct: 2237864 gcgtcgcgacggcgccgccc 2237845
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 468     ctgccgtcgtcgccggcgtc 487
               ||||||||||||||||||||
Sbjct: 4741252 ctgccgtcgtcgccggcgtc 4741233
to top
>gb|AC155252.2| Mus musculus BAC clone RP24-190H19 from chromosome 14, complete sequence
          Length = 152012

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    aatactaaaacaatactgga 132
              ||||||||||||||||||||
Sbjct: 137920 aatactaaaacaatactgga 137939
to top
>gb|AC009469.4| Homo sapiens BAC clone RP11-20N16 from 2, complete sequence
          Length = 168448

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tcctctgccagccccatctg 225
              ||||||||||||||||||||
Sbjct: 133506 tcctctgccagccccatctg 133487
to top
>emb|BX321894.8| Zebrafish DNA sequence from clone DKEYP-56B7 in linkage group 19,
             complete sequence
          Length = 181789

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 161   cttttcctaatcaatcaatcaatc 184
             |||||| |||||||||||||||||
Sbjct: 15128 cttttcttaatcaatcaatcaatc 15151
to top
>gb|AC154843.2| Mus musculus BAC clone RP23-58N15 from chromosome 14, complete sequence
          Length = 199716

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aatactaaaacaatactgga 132
             ||||||||||||||||||||
Sbjct: 10547 aatactaaaacaatactgga 10566
to top
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056I22
          Length = 147728

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 478   cgccggcgtcgcgacggcgccgcc 501
             ||||| ||||||||||||||||||
Sbjct: 76016 cgccgtcgtcgcgacggcgccgcc 76039
to top
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0455A11
          Length = 158629

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   ctgccgtcgtcgccggcgtc 487
             ||||||||||||||||||||
Sbjct: 99268 ctgccgtcgtcgccggcgtc 99249
to top
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 470     gccgtcgtcgccggcgtcgc 489
               ||||||||||||||||||||
Sbjct: 2983137 gccgtcgtcgccggcgtcgc 2983156
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     ccggcgtcgcgacggcgccg 499
               ||||||||||||||||||||
Sbjct: 1275007 ccggcgtcgcgacggcgccg 1274988
to top
>emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in linkage group 19,
             complete sequence
          Length = 179116

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 161   cttttcctaatcaatcaatcaatc 184
             ||||||| ||||||||||||||||
Sbjct: 89955 cttttccaaatcaatcaatcaatc 89978
to top
>gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152586

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    tcctctgccagccccatctg 225
              ||||||||||||||||||||
Sbjct: 129010 tcctctgccagccccatctg 129029
to top
>gb|AC137950.16| Mus musculus chromosome 15, clone RP24-356L7, complete sequence
          Length = 182058

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    tcctaatcaatcaatcaatc 184
              ||||||||||||||||||||
Sbjct: 138815 tcctaatcaatcaatcaatc 138834
to top
>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence
          Length = 189805

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  aatcaatcaatcaatcgcta 188
            ||||||||||||||||||||
Sbjct: 7916 aatcaatcaatcaatcgcta 7897
to top
>dbj|AP003327.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-507F16, complete
              sequence
          Length = 188040

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    ctaaaacaatactggatgct 136
              ||||||||||||||||||||
Sbjct: 115388 ctaaaacaatactggatgct 115407
to top
>gb|AC120156.9| Mus musculus chromosome 18, clone RP24-263P17, complete sequence
          Length = 153019

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   gatggtcgacaccggggtga 326
             ||||||||||||||||||||
Sbjct: 53157 gatggtcgacaccggggtga 53138
to top
>emb|AJ629123.1| Streptomyces sp. DSM 40477 genomic region of the apramycin biosynthesis
             cluster
          Length = 41623

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   cgccggcgtcgcgacggcgc 497
             ||||||||||||||||||||
Sbjct: 16011 cgccggcgtcgcgacggcgc 16030


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,532,900
Number of Sequences: 3902068
Number of extensions: 4532900
Number of successful extensions: 167139
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165695
Number of HSP's gapped (non-prelim): 1443
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top